NO05G05340.2, NO05G05340.2 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO05G05340.2
Unique Name	NO05G05340.2
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	3048
Alignment location	chr5:1424872..1432065 -

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr5	genome	chr5:1424872..1432065 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO05G05340.2 vs.
Match: EWM27861.1 (pre-mrna-splicing factor syf1 [Nannochloropsis gaditana])

HSP 1 Score: 1558.5 bits (4034), Expect = 0.000e+0
Identity = 806/980 (82.24%), Postives = 879/980 (89.69%), Query Frame = 0

Query:    3 DGGGMSDEIRALLEDEQDAEFEEEIARNPYSLKGWLRYLEAKTQAKPIKRYLLYERAIKFLPGSYKLWWAYLQERKGQVEGKVAITHARYQILLNTFERALVHLSRMPRIWLAYLATLVDMKKATKTRRAFDAALQSLPITQHQRVWTLYLPWAQGLGVKETAIRVFRRYLKYDPSQREAYVDFLETQGEMEEAAVQLAVCVNDDGFFSPQGTSKHAMWMRLCDLCASHPTAVSRRLKVDAIIRSGLARFTDETGKLWCKLADYYIRLGQFERARDVYEEALNTVLTVRDFTMVFDAYSQCEESLLTARVALLAEEEEQAEE-EDDLDVEGDDTDLRLARLEDLMERRPVMLSSVLLRQNPHNVHEWHKRAKLFQAQKDPHKVIVCYTEAVKTVDPKKAFGKLYSLWTAFARFYEEHEDVDNARVVLNKATLINYKGVEELAGVYCAWAEMEIRHENYEEALQVMQHAVTEPSQAIQRRRQNEAQGRALRESTKGGGEKRAEMIASIPVQERVHRSTRVWSLYLDLEESLGTVATTKAAYERCLELKVATPQIVLNFASFLEENAYHEEAFRAYEKGVSIFGWPHVKPLWAKYLDKFVARYAGSKLERARDLFEQCLEKVPAEDAAEYYIQYAKLEEEHGLARHAMALYDRGTQAVPEDKRFDFFLLYIKKVCIVVLVPSLPPGQQTFGFILPLGQPRPPASPSLPPKVESLYGVTRTREVYQKAIEVLPDEGAKKMCLLYAALERKLGEVDRARGIFTHGANYADPRRDPGYWKQWQDFEVNHGNEETFRDMLRVKRTAQTAFSQVNYMADDAMAMLQSKAGGEGGEEKDEATADAEKLAREAAAAEEKAKRAQAARVMQGGGVGMKRKGEREGEELDMVERQAKRLQAVTAAAVAAVARNEEEIDIDDMDEEEEGGEGGREGGEEEKEVHIEGDTKMHVKPKPIPAAVFARAGLEEEEGEGE-GEGG-MGALERLRKA 980
            D G +SDEIRALLEDEQDAEFEEEIARNP+SLK WLRYL AKTQAKP+KRYL+YERA+KFLPGSYKLWWAYLQERK QV+G+V ++H RYQILLNTFERALVHLSRMPR+WL YL TLVDMKKATKTRRAFDAALQSLPITQH+R+W+LYLPWAQ LGVKETAIRVFRRYLKYDPSQRE+YVDF+E  GEMEEAAV LA+CVNDD FFSP+G+SKHA+WMRLCD+CA HPTA+SRRLKVDAIIRSGLARFTDETGKLWCKLADYYIR GQFERARDVYEEAL+TVLTVRDFTMVFDAYSQCEESLLTARVA+LAEEEE  +E +DDLDVEGDDTDLRLARLEDLMERRP++LSSVLLRQNPHNVHEWHKRAKLFQAQ DPHKVIVC+TEAVKTVDPKKAFGKLYSLWTAFA++YEEH+D+DNARVVLNKATL+N+KGVEELAGVYC WAEMEIRHENYEEALQVMQHAVTEPSQAIQRRRQ EAQGRAL    KGG E+RAEMIASIPVQERVH+STRVWSL+LDLEESLGTVATTKAAYERCLELKVATPQI+LNFASFLEENAYHEEAFRAYEKGVS+FGWPHVKPLW+ YL KFVARY GSKLERARDLFEQCLEKVPA +AA++YI+YAKLEEEHGLARHAMA+YDRGTQAVPEDK                        +  F F+L +             KVE+LYGVTRTREVYQKAIEVLPDEGAK MC+ +A LERKLGE+DRAR ++THGAN+ADPRRDPG+WK+WQDFEVNHGNEETFRDMLRVKRT QTAFSQVNYMADDAMAM+Q+K GG  GEEKDEATADAE LAREAA AEEKAKRAQAARVM GG  G+KRKG  EGEEL+ VERQAKRLQAVTAAAVAA+ RNEEEIDI+DM+EE E G+  +EGG EEKE+HIEGDT++ VK KP+PAAVFARAGLEE+  +GE G GG MGALERL+KA
Sbjct:    4 DRGVVSDEIRALLEDEQDAEFEEEIARNPFSLKSWLRYLNAKTQAKPVKRYLIYERALKFLPGSYKLWWAYLQERKEQVDGRVPVSHPRYQILLNTFERALVHLSRMPRVWLDYLDTLVDMKKATKTRRAFDAALQSLPITQHERIWSLYLPWAQNLGVKETAIRVFRRYLKYDPSQRESYVDFMEKLGEMEEAAVHLAICVNDDAFFSPKGSSKHALWMRLCDMCARHPTAISRRLKVDAIIRSGLARFTDETGKLWCKLADYYIRQGQFERARDVYEEALSTVLTVRDFTMVFDAYSQCEESLLTARVAMLAEEEEPEDETDDDLDVEGDDTDLRLARLEDLMERRPILLSSVLLRQNPHNVHEWHKRAKLFQAQNDPHKVIVCFTEAVKTVDPKKAFGKLYSLWTAFAKYYEEHDDIDNARVVLNKATLVNFKGVEELAGVYCTWAEMEIRHENYEEALQVMQHAVTEPSQAIQRRRQTEAQGRALGGGKKGG-EERAEMIASIPVQERVHKSTRVWSLFLDLEESLGTVATTKAAYERCLELKVATPQIILNFASFLEENAYHEEAFRAYEKGVSVFGWPHVKPLWSLYLQKFVARYGGSKLERARDLFEQCLEKVPAVEAADFYIRYAKLEEEHGLARHAMAIYDRGTQAVPEDK------------------------RYDF-FLLYI------------KKVEALYGVTRTREVYQKAIEVLPDEGAKNMCIQFAELERKLGEIDRARAVYTHGANFADPRRDPGFWKKWQDFEVNHGNEETFRDMLRVKRTIQTAFSQVNYMADDAMAMVQAKEGG--GEEKDEATADAETLAREAAKAEEKAKRAQAARVMAGGAGGVKRKGGSEGEELEAVERQAKRLQAVTAAAVAALERNEEEIDIEDMEEEGEEGDRIQEGG-EEKEIHIEGDTEIQVKAKPVPAAVFARAGLEEDAKDGEVGNGGSMGALERLKKA 942

The following BLAST results are available for this feature:

BLAST of NO05G05340.2 vs.

BLAST of NO05G05340.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM27861.1	0.000e+0	82.24	pre-mrna-splicing factor syf1 [Nannochloropsis gad...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO05G05340	NO05G05340	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO05G05340.2	NO05G05340.2-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO05G05340.2.cds1	NO05G05340.2.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G05340.2.cds2	NO05G05340.2.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G05340.2.cds3	NO05G05340.2.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G05340.2.cds4	NO05G05340.2.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G05340.2.cds5	NO05G05340.2.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G05340.2.cds6	NO05G05340.2.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G05340.2.cds7	NO05G05340.2.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G05340.2.cds8	NO05G05340.2.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G05340.2.cds9	NO05G05340.2.cds9	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G05340.2.cds10	NO05G05340.2.cds10	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G05340.2.cds11	NO05G05340.2.cds11	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G05340.2.cds12	NO05G05340.2.cds12	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G05340.2.cds13	NO05G05340.2.cds13	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G05340.2.cds14	NO05G05340.2.cds14	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G05340.2.cds15	NO05G05340.2.cds15	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G05340.2.cds16	NO05G05340.2.cds16	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G05340.2.cds17	NO05G05340.2.cds17	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G05340.2.cds18	NO05G05340.2.cds18	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G05340.2.cds19	NO05G05340.2.cds19	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G05340.2.cds20	NO05G05340.2.cds20	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G05340.2.cds21	NO05G05340.2.cds21	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G05340.2.cds22	NO05G05340.2.cds22	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G05340.2.cds23	NO05G05340.2.cds23	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G05340.2.cds24	NO05G05340.2.cds24	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr5:1424872..1432065-
coding sequence from alignment at chr5:1424872..1432065-

mRNA sequence

>NO05G05340.2 ID=NO05G05340.2|Name=NO05G05340.2|organism=Nannochloropsis oceanica|type=mRNA|length=3048bp
ATTACAGGCAGCATGGCGGATGGCGGCGGCATGAGCGACGAGATCCGGGC
GCTGCTGGAGGATGAACAGGACGCGGAATTTGAGGAGGAAATCGCCCGTA
ACCCCTACTCCCTGAAGGGATGGCTCCGGTACCTAGAAGCCAAAACCCAA
GCCAAGCCCATCAAGCGCTACCTACTATACGAGCGTGCCATCAAATTTCT
ACCGGGATCCTACAAGCTGTGGTGGGCGTATTTGCAGGAGCGCAAGGGCC
AGGTGGAGGGCAAGGTGGCCATCACTCACGCGCGGTATCAGATCCTCCTC
AACACCTTCGAGCGTGCCCTGGTCCATCTCTCCCGCATGCCTAGAATTTG
GCTGGCCTACCTCGCCACCCTCGTGGACATGAAGAAGGCGACGAAAACCC
GGCGCGCATTCGACGCCGCCCTCCAGTCCCTCCCCATCACCCAGCACCAG
CGCGTGTGGACCCTCTACCTCCCCTGGGCGCAAGGCCTGGGAGTCAAGGA
GACGGCCATCCGCGTCTTCCGGCGGTACCTCAAGTACGACCCCTCCCAAC
GCGAGGCCTACGTGGACTTCCTGGAGACGCAAGGCGAGATGGAGGAGGCG
GCCGTGCAGCTCGCCGTCTGCGTCAACGATGACGGTTTTTTCTCTCCTCA
GGGCACCTCCAAGCACGCCATGTGGATGCGCCTGTGCGACCTCTGCGCCT
CGCACCCTACAGCCGTCTCTCGCCGCCTCAAGGTCGACGCCATCATTCGC
AGCGGTCTCGCTCGCTTCACGGACGAGACCGGCAAACTTTGGTGCAAGCT
CGCAGACTACTACATCCGCTTGGGTCAATTCGAGCGCGCCCGAGATGTCT
ATGAGGAAGCCCTCAACACCGTCCTGACGGTGCGGGATTTTACGATGGTC
TTCGACGCCTACTCCCAATGCGAGGAGTCCTTGCTCACAGCCAGAGTAGC
CCTGCTGGCGGAGGAGGAGGAGCAGGCGGAGGAGGAAGACGATCTGGACG
TGGAGGGCGACGATACGGACTTGCGCCTGGCCCGCCTGGAGGACCTGATG
GAGAGACGGCCTGTTATGCTGTCCTCCGTCCTCCTCCGGCAGAACCCGCA
CAACGTTCACGAGTGGCACAAGCGGGCCAAGCTCTTCCAGGCGCAAAAAG
ACCCCCATAAGGTCATTGTCTGCTACACGGAGGCCGTCAAAACCGTCGAC
CCCAAGAAGGCATTCGGGAAGCTCTACTCCCTCTGGACCGCCTTCGCACG
ATTCTACGAGGAGCACGAGGACGTGGACAACGCTCGGGTCGTCCTGAACA
AGGCAACTCTCATCAACTACAAGGGCGTGGAGGAGCTGGCCGGCGTGTAC
TGTGCATGGGCCGAGATGGAGATCCGACACGAGAACTACGAGGAGGCCCT
GCAGGTGATGCAGCACGCCGTGACTGAGCCCTCCCAAGCCATCCAGCGGC
GGCGACAAAACGAGGCCCAGGGCCGAGCTTTAAGGGAGTCCACAAAGGGA
GGCGGCGAAAAGCGCGCGGAAATGATCGCTAGCATACCGGTGCAGGAACG
CGTGCATCGCTCCACCCGCGTCTGGTCGCTCTATCTCGACCTGGAGGAGT
CTTTGGGAACAGTTGCCACCACCAAAGCCGCCTACGAACGATGCTTGGAG
CTCAAGGTGGCTACACCCCAGATCGTCCTGAACTTCGCCTCCTTCCTCGA
GGAGAACGCCTACCACGAGGAGGCCTTCCGGGCCTACGAGAAGGGCGTCT
CCATTTTTGGCTGGCCGCACGTCAAGCCCCTATGGGCCAAGTACCTCGAC
AAGTTCGTCGCACGGTACGCGGGCAGCAAGCTCGAGCGTGCCCGCGATCT
CTTCGAGCAGTGCCTTGAGAAGGTCCCGGCCGAAGACGCCGCCGAGTACT
ACATCCAGTATGCCAAGCTGGAGGAAGAGCACGGGCTAGCTCGCCACGCC
ATGGCCCTCTACGATCGGGGCACGCAGGCGGTGCCCGAAGACAAACGCTT
CGACTTTTTCCTCCTCTACATCAAGAAGGTATGCATCGTCGTCCTGGTCC
CCTCCCTCCCTCCAGGGCAACAGACATTTGGTTTTATCTTACCCCTCGGA
CAACCCCGCCCGCCCGCTTCTCCCTCCCTCCCTCCCAAGGTGGAGTCCTT
GTACGGCGTAACGCGCACCCGCGAGGTGTATCAGAAGGCCATCGAAGTAC
TGCCCGACGAGGGCGCGAAGAAAATGTGTCTCCTCTACGCAGCGCTGGAG
CGAAAGCTGGGAGAGGTGGACCGTGCCCGAGGCATCTTTACGCATGGCGC
CAATTACGCCGACCCGCGCCGGGATCCCGGCTACTGGAAGCAGTGGCAAG
ATTTTGAGGTCAACCACGGCAACGAGGAGACCTTTCGGGACATGCTCCGG
GTCAAGCGCACCGCGCAGACGGCCTTCTCGCAGGTCAATTACATGGCGGA
CGACGCAATGGCCATGCTCCAGTCCAAGGCCGGAGGAGAGGGTGGCGAGG
AGAAGGACGAAGCGACTGCTGACGCGGAGAAGCTGGCACGAGAAGCAGCA
GCAGCAGAGGAGAAGGCCAAGAGGGCCCAGGCGGCGAGGGTCATGCAGGG
GGGAGGGGTGGGGATGAAGAGGAAGGGAGAGAGAGAGGGGGAGGAGCTGG
ACATGGTAGAGCGACAGGCGAAGAGGCTGCAAGCTGTCACGGCGGCGGCC
GTGGCGGCCGTGGCACGGAATGAGGAGGAGATCGATATTGATGATATGGA
CGAGGAGGAGGAGGGCGGGGAGGGAGGGAGGGAGGGTGGGGAAGAGGAGA
AGGAGGTGCATATTGAAGGAGATACAAAGATGCACGTCAAGCCTAAGCCG
ATTCCGGCGGCGGTGTTTGCAAGGGCGGGATTGGAGGAGGAGGAAGGAGA
AGGAGAAGGAGAAGGGGGGATGGGTGCGTTGGAGAGATTAAGAAAGGCAA
GTAGTAGTAGTAGTAGTAGTAGTAGTAGCAGTAGTAGTAGTAGTAGTAGC
AGCAGTAGCAGCAGAGCTTATTTTAATCGTTACTTTTTTTCCGCGTGA

protein sequence of NO05G05340.2

>NO05G05340.2-protein ID=NO05G05340.2-protein|Name=NO05G05340.2|organism=Nannochloropsis oceanica|type=polypeptide|length=1012bp
MADGGGMSDEIRALLEDEQDAEFEEEIARNPYSLKGWLRYLEAKTQAKPI
KRYLLYERAIKFLPGSYKLWWAYLQERKGQVEGKVAITHARYQILLNTFE
RALVHLSRMPRIWLAYLATLVDMKKATKTRRAFDAALQSLPITQHQRVWT
LYLPWAQGLGVKETAIRVFRRYLKYDPSQREAYVDFLETQGEMEEAAVQL
AVCVNDDGFFSPQGTSKHAMWMRLCDLCASHPTAVSRRLKVDAIIRSGLA
RFTDETGKLWCKLADYYIRLGQFERARDVYEEALNTVLTVRDFTMVFDAY
SQCEESLLTARVALLAEEEEQAEEEDDLDVEGDDTDLRLARLEDLMERRP
VMLSSVLLRQNPHNVHEWHKRAKLFQAQKDPHKVIVCYTEAVKTVDPKKA
FGKLYSLWTAFARFYEEHEDVDNARVVLNKATLINYKGVEELAGVYCAWA
EMEIRHENYEEALQVMQHAVTEPSQAIQRRRQNEAQGRALRESTKGGGEK
RAEMIASIPVQERVHRSTRVWSLYLDLEESLGTVATTKAAYERCLELKVA
TPQIVLNFASFLEENAYHEEAFRAYEKGVSIFGWPHVKPLWAKYLDKFVA
RYAGSKLERARDLFEQCLEKVPAEDAAEYYIQYAKLEEEHGLARHAMALY
DRGTQAVPEDKRFDFFLLYIKKVCIVVLVPSLPPGQQTFGFILPLGQPRP
PASPSLPPKVESLYGVTRTREVYQKAIEVLPDEGAKKMCLLYAALERKLG
EVDRARGIFTHGANYADPRRDPGYWKQWQDFEVNHGNEETFRDMLRVKRT
AQTAFSQVNYMADDAMAMLQSKAGGEGGEEKDEATADAEKLAREAAAAEE
KAKRAQAARVMQGGGVGMKRKGEREGEELDMVERQAKRLQAVTAAAVAAV
ARNEEEIDIDDMDEEEEGGEGGREGGEEEKEVHIEGDTKMHVKPKPIPAA
VFARAGLEEEEGEGEGEGGMGALERLRKASSSSSSSSSSSSSSSSSSSSS
RAYFNRYFFSA*

mRNA from alignment at chr5:1424872..1432065-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO05G05340.2 ID=NO05G05340.2|Name=NO05G05340.2|organism=Nannochloropsis oceanica|type=mRNA|length=7194bp|location=Sequence derived from alignment at chr5:1424872..1432065- (Nannochloropsis oceanica)
ATTACAGGCAGCATGGCGGATGGCGGCGGCATGAGCGACGAGATCCGGGC
GCTGCTGGAGGATGAACAGGACGCGGAATTTGAGGAGGTACGTTTAGCGG
ACGTGGGAGAGACTGAGATAAGAGACGGGAGGGGCGGACGATGATAGAGA
TGATAGTGCGAAGGAGGTCGAGGGTGTCGAGGATGGGGGAAGAGCAACAC
TCTATGGAGATCAAGTACTGCACTACCCCAGTGGTCCTGCGGTAATTTGA
CTGCATGCCTTCACCTTCCTTCATATATGGGTTTGGGTGTACACGAGCAC
GAGTCATTCCGCTCAAATGCCCTGTCCCTCCTTCCCTACCCCAGGAAATC
GCCCGTAACCCCTACTCCCTGAAGGGATGGCTCCGGTACCTAGAAGCCAA
AACCCAAGCCAAGCCCATCAAGCGCTACCTACTATACGAGCGTGCCATCA
AATTTCTACCGGGATCCTACAAGCTGTGGTGGGCGTATTTGCAGGTAAGG
GAGGGAGGGAGGGAGGAAGGGAGGAATGGGAAGGAAAGATTGATGAAGGC
GATGTTTGCGTCTCCTCTGTTTCCATGTAGTCCTTAAAAGCAAGAGAGCC
AATACATCTTTCTACATTGTCCGCTGTTGACTTCACACCTCTCTACACGC
CTGTCCTTTGTGTTCCTCACCCCTTTCCTCCCTCCAACCCAACCGCCCGG
ACACGCAGGAGCGCAAGGGCCAGGTGGAGGGCAAGGTGGCCATCACTCAC
GCGCGGTATCAGATCCTCCTCAACACCTTCGAGCGGTAGGGAGGAGAGGC
GGGAAGGAGGGCTGGAAGGAGGGAGGGAGGGGAGATGAAGCGAGAGGGAG
CAAATGAGATACTTGTCATCGTCACTTACGCATTGTCTCTCCTCTCCCCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTGTTACAGTGCCCTGG
TCCATCTCTCCCGCATGCCTAGAATTTGGCTGGCCTACCTCGCCACCCTC
GTGGACATGAAGAAGGTACGCCACCCCCCTCTCCCCTCCTGTCCCTTCCT
CTCGCCTCCTCACCTCCCTCTTCCTTTTTCCCTTCCTCTCGCCTCCTCAC
CTCCCTCTTCCTTTTCCTATTCCCCTCACCTCGTCATCTCCCGCCTCCTC
ACTTGTCCTCTTCTTCACCCACCCTCCCTCCCCCCAGGCGACGAAAACCC
GGCGCGCATTCGACGCCGCCCTCCAGTCCCTCCCCATCACCCAGCACCAG
CGCGTGTGGACCCTCTACCTCCCCTGGGCGCAAGGCCTGGGAGTCAAGGA
GACGGCCATCCGCGTCTTCCGGTCCGTCCTGCCCCTCCCTCCCTCCCTCC
CTCCCTCCTTTCCTCGAGAAGGGTGCCTGCCAAAAGAAGGACAGTTCCGC
GCACGTACTCACATCCTTACCTTCTTCCCTCCCTCCGTCCCTTCCTCAGG
CGGTACCTCAAGTACGACCCCTCCCAACGCGAGGCCTACGTGGACTTCCT
GGAGACGCAAGGCGAGATGGAGGAGGCGGCCGTGCAGCTCGCCGTCTGCG
TCAACGATGACGGTTTTTTCTCTCCTCAGGGTAAGCAGGCTCCTCCCCAT
ATGCGGTGGCCTCTGGCGCGGCTGGTGTTGCAGCTGCTGGTGCCTGATGG
TGGTGGCAGTCGAAACCATCCCCCTCCTTCCTTCCCTTCCTCCCTCCTTC
CTAAGCTTGTTCACAGCGATTCTCTAAATTTCCTCCTCTCTCGCCCGCCT
CCTCCGTCCCTCCCTTCTTTCCTTGTCCAGGCACCTCCAAGCACGCCATG
TGGATGCGCCTGTGCGACCTCTGCGCCTCGCACCCTACAGCCGTCTCTCG
CCGCCTCAAGGTCGACGCCATCATTCGCAGCGGTCTCGCTCGCTTCACGG
ACGAGACCGGCAAACTTTGGTACGCCCCTCCCTACCTCCCTCCCTCCCTC
CCTCCCTTCCTCCCTCCCTCCCTCTTTTACATACTTTCCGATTACGTCCT
TCCCTCCTTCCTTCTCCTCCCTCCCTTCTCTCCTCCTCTTGTTGTTGTTC
ACCGCCTCCTGATCCATCCGCGCGACCTCCCCTCTCTCTCCCTTCCACCC
TCCCCCCTTCCCTCCCTCCCTCTCCAGGTGCAAGCTCGCAGACTACTACA
TCCGCTTGGGTCAATTCGAGCGCGCCCGAGATGTCTATGAGGAAGCCCTC
AACACGTACGTCCCCTCTAACCCGTCCCCCCTCCCTCCCTTCCAATTTGC
CGTTCGAGATACCTTACTTCTCGCCTTTTCCTCCCTTCCTCCCTCCCTCC
CTCCCCCCCGCCCTCCCTCAGCGTCCTGACGGTGCGGGATTTTACGATGG
TCTTCGACGCCTACTCCCAATGCGAGGAGTCCTTGCTCACAGCCAGAGTA
GCCCTGCTGGCGGAGGAGGAGGTGAGGAGGCAGGGAGGGAGGGAGGGCAG
GAGGAGGGAGAACGGACCGAGATCTTAGGGAGGAAGGAGGGCAGGAGGAA
GGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGGAGAAA
CAGTGCTTGGGCCCGGAGAAGGGAGGGTGGATCGAAAAAAAGAATTCGGA
GGCGCATCTCGGCTCACGCACTCTCCCCCTCCCTCCTTCCTCCCTCCCTC
CCTTGGCCTCATCAGGAGCAGGCGGAGGAGGAAGACGATCTGGACGTGGA
GGGCGACGATACGGACTTGCGCCTGGCCCGCCTGGAGGACCTGATGGAGA
GACGGCCTGTTATGGTATGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAG
GGTAGAGAAGACATCCTTTCACGAGCGGAGCCTGCGTGAGTACATACATT
TAACTACTACGATTGACCTCCACTCCTCCCTCCCTCCCTCCCTCCCCACC
CCCAGCTGTCCTCCGTCCTCCTCCGGCAGAACCCGCACAACGTTCACGAG
TGGCACAAGCGGGCCAAGCTCTTCCAGGCGCAAAAAGACCCCCATAAGGT
ACGCCCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCCTTCTATTCTC
CACGTTTACCCTCCCTCCCTCCTCCCCTTCCTCCCTCTCTTCCCTCCAGG
TCATTGTCTGCTACACGGAGGCCGTCAAAACCGTCGACCCCAAGAAGGCA
TTCGGGAAGCTCTACTCCCTCTGGACCGCCTTCGCACGGTACATGCCCCT
CCTTCCCTCCCTCCCTCCCTCCCTCCATATCTCCCTCCCTCCCTCCCTCT
AACCAATTCCTCCTCCCTCTTTCCCATTCCCTCTTTCCTATTCTCTCTTT
CCCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTC
CTCCCTCCCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCTCTCCCTCCCT
GCAGATTCTACGAGGAGCACGAGGACGTGGACAACGCTCGGGTCGTCCTG
AACAAGGCAACTCTCATCAACTACAAGGTACATTCCTCCCTCATTCCCTC
CCTCCCTCCCTCCCTCCCTCCTATCCTTCCTCGCTCCCCACTCACCCCAC
CCTCCCCCTCCCTCCCTCCCTCCCTCCCCCCCTCCCTCCTCACAGGGCGT
GGAGGAGCTGGCCGGCGTGTACTGTGCATGGGCCGAGATGGAGATCCGAC
ACGAGAACTACGAGGAGGCCCTGCAGGTGGGCCTTCCATCCATCCCTCCC
TCCTTCCCTCCCTCCTTCGAACCATCCCCTCCCTTTCTTGTCTCAGCCCT
CTCCCGTCTCACACCTCCCCTCCCCCCCTCCCTTCCTCCCTCTCTCCCTC
TTTTCTCCCAGGTGATGCAGCACGCCGTGACTGAGCCCTCCCAAGCCATC
CAGCGGCGGCGACAAAACGAGGCCCAGGGCCGAGCTTTAAGGGAGTCCAC
AAAGGGAGGCGGCGAAAAGCGCGCGGAAATGATCGCTAGCATACCGGTGC
AGGTACGTCAGGCGTGGCTTCCCTCCCTCCCTCCCTCCCTCCCTCTCTCC
CCCTCCTCCCGTTTTCCCACCTTCCGCCTCGTCACTCCTCCATCCATGCC
CCAACACTTAGCCCTCCCCCCTCCCTCCCCCCCTCCCTCCCTCCCCCCCT
GCCTCCCTCCCTCAGGAACGCGTGCATCGCTCCACCCGCGTCTGGTCGCT
CTATCTCGACCTGGAGGAGTCTTTGGGAACAGTTGCCACCACCAAAGCCG
CCTACGAACGATGCTTGGAGCTCAAGGTACGACCCTTCCTCCCTCCCTTC
CTCCCTCCCTTCCTCCCTCCTTCAATCCCTTTCTCTACGGGTGTTTCCCC
TTTCCTTTCTTTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTCTCT
CTCTCTCTGTCTCTCTCTCCCCCCCCCCTCCCCCCCTCTCTCTCTCTCTC
TCTCTGTCTCTGTCTCTGTCTCTCTTTCCCCCCCCCCCTTCCCCCCCTCT
CTCCCCCCCCCCCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCCCCCCCTCCCCCCCCCTCCCCCCCCCTCTCTCTCTCTCTCTCTCTCT
CTCTCCCCCCCCTCCCCCTCTCCCCCCCCCCTCCCCTCTCTCTCTCCCCC
CCCCTCTCTCTCTCTCTCTCTCCCGTGGTTTCTCACTCACATTTCCTTCC
CCCCCTCTCTCCACCCTCCATGTCCATTCTCGCCTAATTTGAAGGTGGCT
ACACCCCAGATCGTCCTGAACTTCGCCTCCTTCCTCGAGGAGAACGCCTA
CCACGAGGAGGCCTTCCGGGCCTACGAGAAGGTGCCTTCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCTCATGATCCACTACTTTCCCCCCTGCTTTCCTTCC
CTCCTTCTCTTCCTGCCTGATTAGTTTGAAGGTCCACTCACGTCCCTCCC
TCCCTCCCTCCCTCCCTCCCCCCCTCCAGGGCGTCTCCATTTTTGGCTGG
CCGCACGTCAAGCCCCTATGGGCCAAGTACCTCGACAAGTTCGTCGCACG
GTGTGTTGCCCTCCCTTTCCCCCTCCTCTCCCACCCCCTCTCCCTCCCTC
TCTCACTGCCTCTAAACTTCCCTTCCTCCCTCCCTCTCCCCCTCCCTCCC
TCCCTTTCCCCGCCTGCTTCAGGTACGCGGGCAGCAAGCTCGAGCGTGCC
CGCGATCTCTTCGAGCAGTGCCTTGAGAAGGTCCCGGCCGAAGACGCCGC
CGAGTACTACATCCAGGTGCTTCCTCTTTCTCCCCCTCCTTCCCTCCTTC
CTTCCATCCCCCCCTCCTGCTCGTGTCCCCACCGGAAGCAAAGGAAATTC
ACACTTCCCTCCCTCCCTTTCTTCCCCCCCTCCCTTCCTCCCTCCCTCCC
TTCCTCCCTCCCTCCCTTCCTCCCTCCCTCCCTTCCTCCCTCCCTCCCTT
CCTAGTATGCCAAGCTGGAGGAAGAGCACGGGCTAGCTCGCCACGCCATG
GCCCTCTACGATCGGGGCACGCAGGCGGTGCCCGAAGACAAACGCTTCGA
CTTTTTCCTCCTCTACATCAAGAAGGTATGCATCGTCGTCCTGGTCCCCT
CCCTCCCTCCAGGGCAACAGACATTTGGTTTTATCTTACCCCTCGGACAA
CCCCGCCCGCCCGCTTCTCCCTCCCTCCCTCCCAAGGTGGAGTCCTTGTA
CGGCGTAACGCGCACCCGCGAGGTGTATCAGAAGGCCATCGAAGTACTGC
CCGACGAGGGCGCGAAGAAAATGTGTCTCCTCTACGCAGCGCTGGAGCGA
AAGCTGGGAGAGGTGCGTTCTTATGTCGATTCGTCCCTCCTCCCTCCTTA
TTCTCACCGATCTGCCATTTTCCAATCATTCCCTCCGACCTCCTTCCTTC
TCTCCGTTCCTCCTTCCTTCACCAGGTGGACCGTGCCCGAGGCATCTTTA
CGCATGGCGCCAATTACGCCGACCCGCGCCGGGATCCCGGCTACTGGAAG
CAGTGGCAAGATTTTGAGGTACTTTGCTTCCCTCCTGCCCTACCTTCCTC
CTCTCCTCTCCTCGCGTATTTCTTCATCAACGCAGGCGGATTCTTGGCTG
GACTACCAGTACCCTCCTCACCCCTCACCTCCTTTCCTCCTCCCTCCCTC
CCCTCCCAGGTCAACCACGGCAACGAGGAGACCTTTCGGGACATGCTCCG
GGTCAAGCGCACCGCGCAGACGGCCTTCTCGCAGGTAGGTCGCGAGGAAG
GGTGGGGAGGGAAGGAAAGAGGGACGAAGGAAAAAAAAATAGCGTATGTG
CATCGGTTGAGTGAGGATAACATGATCATATTTCGGTATCAACCGCCAGA
AATCATCACCTCATTCTTTCGCCCCTCCCTCCCTCCGCCCTTCCTTTTCT
CCCTTTGTCTCTTTCACTGCAACAGGTCAATTACATGGCGGACGACGCAA
TGGCCATGCTCCAGTCCAAGGCCGGAGGAGAGGGTGGCGAGGAGAAGGAC
GAAGCGACTGCTGACGCGGAGAAGCTGGCACGAGAAGCAGCAGCAGCAGA
GGAGAAGGCCAAGAGGGCCCAGGCGGCGAGGGTCATGCAGGGGGGAGGGG
TGGGGATGAAGAGGAAGGGAGAGAGAGAGGGGGAGGAGCTGGACATGGTA
GAGCGACAGGCGAAGAGGCTGCAAGCTGTCACGGCGGCGGCCGTGGCGGC
CGTGGCACGGAATGAGGAGGAGATCGATATTGATGATATGGACGAGGAGG
AGGAGGGCGGGGAGGGAGGGAGGGAGGGTGGGGAAGAGGAGAAGGAGGTG
CATATTGAAGGAGATACAAAGATGCACGTCAAGCCTAAGCCGATTCCGGC
GGCGGTGTTTGCAAGGGCGGGATTGGAGGAGGAGGAAGGAGAAGGAGAAG
GAGAAGGGGGGATGGGTGCGTTGGAGAGATTAAGAAAGGCAAGGTAGAGG
CTGCTGTGGGAGTGGTTTCGAAAATAAGCGTAAGTGAGGCGATTTGAAAA
AAAGGAAAGTAATTTTGAAGCGATGTTGACACCGTATGGAGTGGCAGTAG
TAGTAGTAGTAGTAGTAGTAGTAGCAGTAGTAGTAGTAGTAGTAGCAGCA
GTAGCAGCAGAGCTTATTTTAATCGTTACTTTTTTTCCGCGTGA

Coding sequence (CDS) from alignment at chr5:1424872..1432065-

>NO05G05340.2 ID=NO05G05340.2|Name=NO05G05340.2|organism=Nannochloropsis oceanica|type=CDS|length=3036bp|location=Sequence derived from alignment at chr5:1424872..1432065- (Nannochloropsis oceanica)
ATGGCGGATGGCGGCGGCATGAGCGACGAGATCCGGGCGCTGCTGGAGGA
TGAACAGGACGCGGAATTTGAGGAGGAAATCGCCCGTAACCCCTACTCCC
TGAAGGGATGGCTCCGGTACCTAGAAGCCAAAACCCAAGCCAAGCCCATC
AAGCGCTACCTACTATACGAGCGTGCCATCAAATTTCTACCGGGATCCTA
CAAGCTGTGGTGGGCGTATTTGCAGGAGCGCAAGGGCCAGGTGGAGGGCA
AGGTGGCCATCACTCACGCGCGGTATCAGATCCTCCTCAACACCTTCGAG
CGTGCCCTGGTCCATCTCTCCCGCATGCCTAGAATTTGGCTGGCCTACCT
CGCCACCCTCGTGGACATGAAGAAGGCGACGAAAACCCGGCGCGCATTCG
ACGCCGCCCTCCAGTCCCTCCCCATCACCCAGCACCAGCGCGTGTGGACC
CTCTACCTCCCCTGGGCGCAAGGCCTGGGAGTCAAGGAGACGGCCATCCG
CGTCTTCCGGCGGTACCTCAAGTACGACCCCTCCCAACGCGAGGCCTACG
TGGACTTCCTGGAGACGCAAGGCGAGATGGAGGAGGCGGCCGTGCAGCTC
GCCGTCTGCGTCAACGATGACGGTTTTTTCTCTCCTCAGGGCACCTCCAA
GCACGCCATGTGGATGCGCCTGTGCGACCTCTGCGCCTCGCACCCTACAG
CCGTCTCTCGCCGCCTCAAGGTCGACGCCATCATTCGCAGCGGTCTCGCT
CGCTTCACGGACGAGACCGGCAAACTTTGGTGCAAGCTCGCAGACTACTA
CATCCGCTTGGGTCAATTCGAGCGCGCCCGAGATGTCTATGAGGAAGCCC
TCAACACCGTCCTGACGGTGCGGGATTTTACGATGGTCTTCGACGCCTAC
TCCCAATGCGAGGAGTCCTTGCTCACAGCCAGAGTAGCCCTGCTGGCGGA
GGAGGAGGAGCAGGCGGAGGAGGAAGACGATCTGGACGTGGAGGGCGACG
ATACGGACTTGCGCCTGGCCCGCCTGGAGGACCTGATGGAGAGACGGCCT
GTTATGCTGTCCTCCGTCCTCCTCCGGCAGAACCCGCACAACGTTCACGA
GTGGCACAAGCGGGCCAAGCTCTTCCAGGCGCAAAAAGACCCCCATAAGG
TCATTGTCTGCTACACGGAGGCCGTCAAAACCGTCGACCCCAAGAAGGCA
TTCGGGAAGCTCTACTCCCTCTGGACCGCCTTCGCACGATTCTACGAGGA
GCACGAGGACGTGGACAACGCTCGGGTCGTCCTGAACAAGGCAACTCTCA
TCAACTACAAGGGCGTGGAGGAGCTGGCCGGCGTGTACTGTGCATGGGCC
GAGATGGAGATCCGACACGAGAACTACGAGGAGGCCCTGCAGGTGATGCA
GCACGCCGTGACTGAGCCCTCCCAAGCCATCCAGCGGCGGCGACAAAACG
AGGCCCAGGGCCGAGCTTTAAGGGAGTCCACAAAGGGAGGCGGCGAAAAG
CGCGCGGAAATGATCGCTAGCATACCGGTGCAGGAACGCGTGCATCGCTC
CACCCGCGTCTGGTCGCTCTATCTCGACCTGGAGGAGTCTTTGGGAACAG
TTGCCACCACCAAAGCCGCCTACGAACGATGCTTGGAGCTCAAGGTGGCT
ACACCCCAGATCGTCCTGAACTTCGCCTCCTTCCTCGAGGAGAACGCCTA
CCACGAGGAGGCCTTCCGGGCCTACGAGAAGGGCGTCTCCATTTTTGGCT
GGCCGCACGTCAAGCCCCTATGGGCCAAGTACCTCGACAAGTTCGTCGCA
CGGTACGCGGGCAGCAAGCTCGAGCGTGCCCGCGATCTCTTCGAGCAGTG
CCTTGAGAAGGTCCCGGCCGAAGACGCCGCCGAGTACTACATCCAGTATG
CCAAGCTGGAGGAAGAGCACGGGCTAGCTCGCCACGCCATGGCCCTCTAC
GATCGGGGCACGCAGGCGGTGCCCGAAGACAAACGCTTCGACTTTTTCCT
CCTCTACATCAAGAAGGTATGCATCGTCGTCCTGGTCCCCTCCCTCCCTC
CAGGGCAACAGACATTTGGTTTTATCTTACCCCTCGGACAACCCCGCCCG
CCCGCTTCTCCCTCCCTCCCTCCCAAGGTGGAGTCCTTGTACGGCGTAAC
GCGCACCCGCGAGGTGTATCAGAAGGCCATCGAAGTACTGCCCGACGAGG
GCGCGAAGAAAATGTGTCTCCTCTACGCAGCGCTGGAGCGAAAGCTGGGA
GAGGTGGACCGTGCCCGAGGCATCTTTACGCATGGCGCCAATTACGCCGA
CCCGCGCCGGGATCCCGGCTACTGGAAGCAGTGGCAAGATTTTGAGGTCA
ACCACGGCAACGAGGAGACCTTTCGGGACATGCTCCGGGTCAAGCGCACC
GCGCAGACGGCCTTCTCGCAGGTCAATTACATGGCGGACGACGCAATGGC
CATGCTCCAGTCCAAGGCCGGAGGAGAGGGTGGCGAGGAGAAGGACGAAG
CGACTGCTGACGCGGAGAAGCTGGCACGAGAAGCAGCAGCAGCAGAGGAG
AAGGCCAAGAGGGCCCAGGCGGCGAGGGTCATGCAGGGGGGAGGGGTGGG
GATGAAGAGGAAGGGAGAGAGAGAGGGGGAGGAGCTGGACATGGTAGAGC
GACAGGCGAAGAGGCTGCAAGCTGTCACGGCGGCGGCCGTGGCGGCCGTG
GCACGGAATGAGGAGGAGATCGATATTGATGATATGGACGAGGAGGAGGA
GGGCGGGGAGGGAGGGAGGGAGGGTGGGGAAGAGGAGAAGGAGGTGCATA
TTGAAGGAGATACAAAGATGCACGTCAAGCCTAAGCCGATTCCGGCGGCG
GTGTTTGCAAGGGCGGGATTGGAGGAGGAGGAAGGAGAAGGAGAAGGAGA
AGGGGGGATGGGTGCGTTGGAGAGATTAAGAAAGGCAAGTAGTAGTAGTA
GTAGTAGTAGTAGTAGCAGTAGTAGTAGTAGTAGTAGCAGCAGTAGCAGC
AGAGCTTATTTTAATCGTTACTTTTTTTCCGCGTGA

Synonyms

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