NO05G04980.1, NO05G04980.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G04980.1
Unique NameNO05G04980.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1023
Alignment locationchr5:1297792..1299945 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1297792..1299945 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO05G04980.1 vs.
Match: CBN74240.1 (putative hUPF2 [Ectocarpus siliculosus])

HSP 1 Score: 129.4 bits (324), Expect = 2.100e-26
Identity = 117/308 (37.99%), Postives = 160/308 (51.95%), Query Frame = 0 
Query:   19 AGKERRQRG--DRNGSGSGRGTRKSSGRTTKASKDIPVTLLSKEKPPVAAVAALSPPPPPSAEE-----------------RAAAQQKQRDDDAEAAAAKAAAMQKRKEEEEARRKEQEKEVQLAAIKQLEEMEKAEEARAALRLQNAPAAVRVSRAEHEAGLKKLKSDLKRTTALIKKVKTALGEDQREIILRDISALNLTMFVSELVQGVIEAKLKPADVPAAVQVCSALHQRYGAFTTGLMAALPGILLDKGGREGGREGGGPAAGEDAKEAGRRKRQVLRLLIELYLVGVHQDHPLLLRLVKSI 308
            A +ERR++   DR  +   R  R++  +  K   +        E    A V   +      AEE                 R A ++++  + AE  AAKAA  ++R++EEE  R  +E E QL A+ QL+ ++K E AR  LR ++ P A++ SR  HEA   KLKSDLK+TTA  KKVK AL EDQR  + +D+  LNL  +VSE+V  V E +LK ADV  AV +C  +HQRY  F   L+  L    L   G E  RE          KE  RRKR  LRLL EL+  GV     L++R+V+S+
Sbjct:  289 AEEERRRKAEEDRKAAEEQRARREAEEKERKRKAEAEARRKDIEDKKAAEVKRKAEEKKRKAEEARRKAADEARKAREEAERKAREERKAAERAEREAAKAAEEERRQKEEEQERVRREFEAQLEAVSQLDLLQKEERARRELREKHTPEALKASRDAHEANKPKLKSDLKKTTAFTKKVK-ALSEDQRSALTKDVETLNLNRYVSEVVDAVAENRLKNADVSVAVHLCCLMHQRYAEFAEDLIPKLAAPFLSAPGGEEERE---------EKELLRRKRSNLRLLTELHASGVFDGSRLIVRIVRSL 586
The following BLAST results are available for this feature:
BLAST of NO05G04980.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBN74240.12.100e-2637.99putative hUPF2 [Ectocarpus siliculosus][more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G04980NO05G04980Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G04980.1NO05G04980.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G04980.1.cds1NO05G04980.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G04980.1.cds2NO05G04980.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G04980.1.cds3NO05G04980.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G04980.1.cds4NO05G04980.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G04980.1.cds5NO05G04980.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G04980.1.cds6NO05G04980.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G04980.1 ID=NO05G04980.1|Name=NO05G04980.1|organism=Nannochloropsis oceanica|type=mRNA|length=1023bp
ATGCAAAAAGGCGGCGATGATAAAGGTGGGGGAGCCATTAGCAGTGGCGA
TGGAGCCGGCAAAGAACGGCGCCAACGCGGCGACCGTAATGGCAGCGGTA
GTGGTAGAGGCACACGCAAGTCTAGCGGCAGGACGACGAAAGCCAGCAAG
GACATTCCCGTGACCCTTCTCAGCAAAGAAAAACCTCCGGTAGCTGCTGT
TGCTGCCCTTTCTCCTCCACCACCACCAAGCGCCGAAGAAAGAGCAGCGG
CGCAGCAAAAACAACGAGACGATGACGCAGAGGCAGCGGCAGCCAAGGCT
GCAGCCATGCAGAAGCGGAAGGAAGAGGAAGAGGCAAGGAGGAAGGAACA
AGAAAAGGAGGTCCAATTGGCGGCGATCAAGCAGCTGGAGGAGATGGAGA
AGGCAGAGGAGGCCCGCGCCGCCCTCCGTCTCCAAAATGCACCGGCCGCC
GTGCGTGTTTCTCGTGCCGAGCACGAAGCCGGGCTGAAGAAGTTGAAGTC
GGATCTAAAGAGGACAACAGCGTTGATTAAGAAGGTCAAGACGGCCCTGG
GGGAAGATCAGCGGGAGATTATTTTGAGGGACATCTCGGCATTGAACCTG
ACCATGTTCGTGTCGGAACTCGTCCAGGGCGTGATAGAAGCCAAGCTTAA
GCCAGCCGACGTCCCTGCTGCGGTGCAGGTGTGCTCGGCTCTGCATCAGC
GATACGGCGCGTTCACTACAGGGCTCATGGCGGCCTTGCCCGGCATCCTT
CTCGACAAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGGGGCCAGCTGC
GGGAGAGGATGCCAAGGAGGCCGGGAGGCGAAAGCGCCAGGTCCTCCGCC
TCCTGATCGAGCTCTATCTTGTGGGCGTGCATCAAGATCACCCCCTCCTC
CTCCGCCTCGTCAAATCCATCCTCCCTCCCGTCCCCCCCTCTTCGCCCCC
CCCCCCTCGACGGACCAGGACAACAGCACCACTGGAGGCGGCGGCGGCGG
CGGTGGCGGAGGCAGGAGCCTGA
back to top

protein sequence of NO05G04980.1

>NO05G04980.1-protein ID=NO05G04980.1-protein|Name=NO05G04980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=341bp
MQKGGDDKGGGAISSGDGAGKERRQRGDRNGSGSGRGTRKSSGRTTKASK
DIPVTLLSKEKPPVAAVAALSPPPPPSAEERAAAQQKQRDDDAEAAAAKA
AAMQKRKEEEEARRKEQEKEVQLAAIKQLEEMEKAEEARAALRLQNAPAA
VRVSRAEHEAGLKKLKSDLKRTTALIKKVKTALGEDQREIILRDISALNL
TMFVSELVQGVIEAKLKPADVPAAVQVCSALHQRYGAFTTGLMAALPGIL
LDKGGREGGREGGGPAAGEDAKEAGRRKRQVLRLLIELYLVGVHQDHPLL
LRLVKSILPPVPPSSPPPPRRTRTTAPLEAAAAAVAEAGA*
back to top

mRNA from alignment at chr5:1297792..1299945+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G04980.1 ID=NO05G04980.1|Name=NO05G04980.1|organism=Nannochloropsis oceanica|type=mRNA|length=2154bp|location=Sequence derived from alignment at chr5:1297792..1299945+ (Nannochloropsis oceanica)
ATGCAAAAAGGCGGCGATGATAAAGGTGGGGGAGCCATTAGCAGTGGCGA
TGGAGCCGGCAAAGGTATCGGTGGTACCTGTCCCTTTCTCGTTTCTTCCC
TCCCTTCCTCCCTCCCCCCCATCCGCGCACCCTCTCGCCACGCGCCATAC
TCACATGCCCCATTCCACCCCTCATAACCTACACAGAACGGCGCCAACGC
GGCGACCGTAATGGCAGCGGTAGTGGTAGAGGCACACGCAAGTCTAGCGG
CAGGACGACGAAAGCCAGCAAGGACATTCCCGTGACCCTTCTCAGCAAAG
AAAAACCTCCGGTAGCTGCTGTTGCTGCCCTTTCTCCTCCACCACCACCA
AGCGCCGAAGAAAGAGCAGCGGCGCAGCAAAAACAACGAGACGATGACGC
AGAGGCAGCGGCAGCCAAGGCTGCAGCCATGCAGAAGCGGAAGGAAGAGG
AAGAGGCAAGGAGGAAGGAACAAGAAAAGGAGGTCCAATTGGCGGCGATC
AAGCAGCTGGAGGAGATGGAGAAGGCAGAGGAGGTAGGACGTGAAAAGAA
AGGGAAAAGGGGAGGGATTGCAGGACGAGATCGGTGCCCTATTTATTTGA
TTCCGCTCGAAAGCATACACCTGGTTGCCTTTTTTTCACGCCGCATGTCA
ATCAACGGTTTTGTGGGTCAGTTTCACACACACACACACACACACACACA
CACACACACCACACACACACACACACACACACACACACACACACACACAC
ACACACACACACCACACACACACACACACACCACACACACACACACACAC
ACACACACACACACACACACACACACACACACACACACACACCACACACA
CACACACACACACACACACACACACACACACACACACACACACACACACA
CACATTCACACACACACACACACACATCTACACATCACCCCTCCCCAAAT
ACATATCCGTACATTTCGACATCCAACATTCCGACATCCGTGCACACATT
CTCCCCTCCCTCCCCTCACCCTTAAGGCCCGCGCCGCCCTCCGTCTCCAA
AATGCACCGGCCGCCGTGCGTGTTTCTCGTGCCGAGCACGAAGCCGGGCT
GAAGAAGTTGAAGTCGGATCTAAAGAGGACAACAGCGTTGATTAAGAAGG
TCAAGACGGCCCTGGGGGAAGATCAGCGGGAGATTATTTTGAGGTAGGGC
GTAGGACGAGGGGGAGGGAGGGAGGGAGGGAGGGAGTGGAAAGAGGGAAG
AGAGGTAAGAAGGACTTTCCGTCGGGGTGTAAATGTACCGTGCTTGTCGT
GCCAGGAGCCCCATGCCTTGAAAACTCATAAACCCTCCCTTCCTCCCTCC
CTCCGTCTCTCCGTCCCTCCTCCAAGGGACATCTCGGCATTGAACCTGAC
CATGTTCGTGTCGGAACTCGTCCAGGGCGTGATAGAAGCCAAGCTTAAGC
CAGCCGACGTCCCTGCTGCGGTGCAGGTAGGGAGCGAGGGAGGAAGGGAG
GAGGCAAGGGAGGGAGGAAAAGAGGGAGGGAGGGGCGGAGGGAGGGAAGA
AGTGAGGGTTTGGAGCGCTTATATATTTTTTTGGTAACCTTTTCTTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCCCTCCCTTCTTCGGTAGG
TGTGCTCGGCTCTGCATCAGCGATACGGCGCGTTCACTACAGGGCTCATG
GCGGCCTTGCCCGGCATCCTTCTCGACAAGGGAGGGAGGGAGGGAGGGAG
GGAGGGAGGGGGGCCAGCTGCGGGAGAGGATGCCAAGGAGGCCGGGAGGC
GAAAGCGCCAGGTAGGGAGGAAGGAAGGGAGGGAGGGAGGGAGGGAGGGA
GGGAGGGAGGGAGGGAGGACAGGATCTGCTCATATTTTGGGTGACTCATA
CAATCTCCCTCTTTTCCTACCCTTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCTTTCCTCTTGTAGGTCCTCCGCCTCCTGATCGAGCTCTATCT
TGTGGGCGTGCATCAAGATCACCCCCTCCTCCTCCGCCTCGTCAAATCCA
TCCTCCCTCCCGTCCCCCCCTCTTCGCCCCCCCCCCCTCGACGGACCAGG
ACAACAGCACCACTGGAGGCGGCGGCGGCGGCGGTGGCGGAGGCAGGAGC
CTGA
back to top

Coding sequence (CDS) from alignment at chr5:1297792..1299945+

>NO05G04980.1 ID=NO05G04980.1|Name=NO05G04980.1|organism=Nannochloropsis oceanica|type=CDS|length=1023bp|location=Sequence derived from alignment at chr5:1297792..1299945+ (Nannochloropsis oceanica)
ATGCAAAAAGGCGGCGATGATAAAGGTGGGGGAGCCATTAGCAGTGGCGA
TGGAGCCGGCAAAGAACGGCGCCAACGCGGCGACCGTAATGGCAGCGGTA
GTGGTAGAGGCACACGCAAGTCTAGCGGCAGGACGACGAAAGCCAGCAAG
GACATTCCCGTGACCCTTCTCAGCAAAGAAAAACCTCCGGTAGCTGCTGT
TGCTGCCCTTTCTCCTCCACCACCACCAAGCGCCGAAGAAAGAGCAGCGG
CGCAGCAAAAACAACGAGACGATGACGCAGAGGCAGCGGCAGCCAAGGCT
GCAGCCATGCAGAAGCGGAAGGAAGAGGAAGAGGCAAGGAGGAAGGAACA
AGAAAAGGAGGTCCAATTGGCGGCGATCAAGCAGCTGGAGGAGATGGAGA
AGGCAGAGGAGGCCCGCGCCGCCCTCCGTCTCCAAAATGCACCGGCCGCC
GTGCGTGTTTCTCGTGCCGAGCACGAAGCCGGGCTGAAGAAGTTGAAGTC
GGATCTAAAGAGGACAACAGCGTTGATTAAGAAGGTCAAGACGGCCCTGG
GGGAAGATCAGCGGGAGATTATTTTGAGGGACATCTCGGCATTGAACCTG
ACCATGTTCGTGTCGGAACTCGTCCAGGGCGTGATAGAAGCCAAGCTTAA
GCCAGCCGACGTCCCTGCTGCGGTGCAGGTGTGCTCGGCTCTGCATCAGC
GATACGGCGCGTTCACTACAGGGCTCATGGCGGCCTTGCCCGGCATCCTT
CTCGACAAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGGGGCCAGCTGC
GGGAGAGGATGCCAAGGAGGCCGGGAGGCGAAAGCGCCAGGTCCTCCGCC
TCCTGATCGAGCTCTATCTTGTGGGCGTGCATCAAGATCACCCCCTCCTC
CTCCGCCTCGTCAAATCCATCCTCCCTCCCGTCCCCCCCTCTTCGCCCCC
CCCCCCTCGACGGACCAGGACAACAGCACCACTGGAGGCGGCGGCGGCGG
CGGTGGCGGAGGCAGGAGCCTGA
back to top
Synonyms
Publications