NO05G04750.2, NO05G04750.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G04750.2
Unique NameNO05G04750.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1932
Alignment locationchr5:1234093..1236786 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1234093..1236786 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G04750.2 vs.
Match: EWM27922.1 (qa- syp4 tlg2p syntaxin 16-type [Nannochloropsis gaditana])

HSP 1 Score: 402.1 bits (1032), Expect = 1.600e-108
Identity = 212/312 (67.95%), Postives = 251/312 (80.45%), Query Frame = 0 
Query:   20 KKPRPTHRSNDSSLSSSTNGPIPGDVHLLGNSKDLEQGGPDWKAARSQLPPRWVDVVDRIDGIVRVIEAQMRELSMLHRKRLLVSFDDSAEAKKEREIQSLTDAITDRFRGAERQLTAVGKQKGDESDSEIKVRRNLQKSLACKIQRLSHAFRSQQKDYLSKLRAQTEGALGGGQFAFLEKKEGVGEGEIIMVPDATSETGFSQTQVAAMQNVEMIVSERDAEITRIAEGIEELAHVMKSLAGFVIDQGTVLDRIDYNMDMAVERVTQGVLQLETAEKIQKQRGPMKCIFGLVFLIFVLLILQVVKHVPRRR 332
            +K RPTHRSNDS+LS+S NG   G  HLLG+ KDLE+GG DW+AARSQLPP WVDVVDR+D  +R I+ QM+ELS LHRKRLLVSFD+ AEA KE+EI +LT+AIT++FR  ER+LTAVG Q   ESD+E+KVRRNLQ+S+A K QRLSHAFR QQKDYL KLRAQ EGA+GGG+FAFL+K EG   GE ++VPD  SETGF Q QV  +++ E +V ERD+EI RIAEGIE LAHVMK L   VIDQG+VLDRIDYN+DMAV+RV QGV QLE  EKIQKQ G   CI  L+FLIF LL++QV+KH PR+R
Sbjct:    3 QKARPTHRSNDSALSNSMNGR--GRAHLLGDPKDLEKGGTDWQAARSQLPPLWVDVVDRVDEAIRNIQGQMKELSRLHRKRLLVSFDEKAEAGKEQEILALTEAITEQFRVVERKLTAVGGQMEGESDAEVKVRRNLQRSMASKTQRLSHAFRFQQKDYLKKLRAQKEGAMGGGEFAFLDKDEG---GEPVLVPDNRSETGFRQAQVTVLESAEALVQERDSEIARIAEGIEALAHVMKRLGELVIDQGSVLDRIDYNIDMAVDRVQQGVTQLEATEKIQKQGGATSCILTLIFLIFALLVVQVIKHAPRKR 309
The following BLAST results are available for this feature:
BLAST of NO05G04750.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27922.11.600e-10867.95qa- syp4 tlg2p syntaxin 16-type [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G04750NO05G04750Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G04750.2NO05G04750.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G04750.2.cds1NO05G04750.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G04750.2.cds2NO05G04750.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G04750.2.cds3NO05G04750.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G04750.2.cds4NO05G04750.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G04750.2.cds5NO05G04750.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G04750.2 ID=NO05G04750.2|Name=NO05G04750.2|organism=Nannochloropsis oceanica|type=mRNA|length=1932bp
TGTGCATTCGTTATCAACATTCTCAAGTTTTTGAAAAAGGAGCGACTCGT
CGACTCATCATCATCCTCCGTACTACTGAATTTTCCTCGTGGCTCTAGTA
CGACAATTTCCTCCCAGAATTGAATACACTTTTCACAGCTGTACTTTCTT
TGCCACTTGCACAAATCTGAAGAATTGTCGGCGAGACACATTAAGAGTAT
TTGTGTCCTTATTCTAATGAATGAGCTGCGGCATCCATGGGCCAATGTGC
GATTTAGCGATGCAATGCGACATGAGTTGTCATATGTCCCTCATTACATG
CTGAACAAATACACGCGTCCCACATTGTTGCGATTATAGGATGCTGAGGC
AGAGTTAATTGAGATACAAGACATGACGACAGATGGCGCGTGCGTGCACA
AGAATGGCTCTCCGAAAGAATGACTGTGCAAGCCGCACCGAGCATGCCCC
CATGGGTGCTAGATGGCCTTCTCCTCTTCTCCTTTGCTGCCCCAAAAAGT
GACTCACAAACACTCTTCGTTGGCTTATGAGGCACAGTCATCTCTGTCTA
TTAATCAGTAATTTCCTGACACTCTTTGCCCTCCATGAAAAATATGTCTG
CACAATTTGGATGCACATGACATCCATCATTCTCCTGTCTGCCGTCCTTC
CCCCTTCCCACCAGCCCCCGACAACATCCATCATATTTGCTACCCCCTCC
CAATAATTAAATGACAGAAGGGAAATGGCCACCCGGGATCTAACCAAGCG
CTTCGTGGAGCAGCGGGCCGAGATCAAGGCGAAAAAGCCTCGCCCAACCC
ACCGGTCAAACGACAGCTCCCTCTCTTCCTCCACCAACGGCCCTATCCCC
GGGGATGTGCATTTATTGGGAAATTCAAAAGATCTCGAGCAGGGTGGGCC
CGATTGGAAGGCGGCTCGCAGCCAGTTGCCGCCGCGGTGGGTGGATGTTG
TGGATAGGATTGATGGCATCGTCCGGGTCATCGAAGCACAGATGCGGGAG
CTTTCCATGCTGCACCGCAAGCGCTTATTGGTGTCCTTTGACGACTCTGC
GGAAGCGAAAAAAGAGAGGGAGATACAATCGTTGACGGATGCGATAACGG
ATCGGTTTCGAGGGGCCGAGAGACAGCTGACAGCCGTTGGGAAGCAGAAA
GGGGACGAGAGCGATTCGGAGATAAAAGTCCGTCGTAACCTACAAAAATC
CCTCGCTTGCAAGATACAACGTCTCTCCCATGCCTTCCGCTCTCAACAAA
AGGATTACCTAAGCAAACTCCGAGCGCAGACGGAGGGGGCACTAGGCGGA
GGGCAGTTCGCTTTCTTGGAGAAAAAGGAAGGAGTTGGGGAGGGGGAGAT
TATCATGGTTCCCGATGCGACCAGTGAGACTGGCTTCAGCCAGACCCAGG
TGGCAGCAATGCAGAACGTGGAAATGATAGTGAGTGAGAGGGACGCGGAG
ATAACGCGGATCGCGGAGGGCATCGAGGAGCTGGCCCATGTCATGAAGTC
TCTGGCAGGCTTTGTGATAGACCAAGGGACGGTGCTGGACCGCATCGATT
ACAACATGGACATGGCGGTTGAGCGGGTCACCCAAGGCGTCCTGCAGCTG
GAAACAGCCGAAAAGATCCAAAAGCAGAGAGGACCGATGAAGTGCATCTT
TGGCTTGGTCTTCCTTATTTTTGTGTTGTTAATACTCCAAGTCGTAAAGC
ACGTCCCGAGACGGAGGCGGTAGGGGGGGAGGGAGAAAAGGAAGAGAAGA
TGTACATTGGCATGTATGTAATGGGTCGTGCGGGTGTGTGTGTGGGTGGG
GCGCGTGGCTTACTGCTGCATGTTCGAAAAAAGAGGAAGACGGAAGGTCA
GTCCAGGAGGATGAAAGAGATATCGAGAAACATCCATGTGCAAAAAGCGA
AGAAAGAAAATGAGTCGCCAGAAGATAGGCAA
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protein sequence of NO05G04750.2

>NO05G04750.2-protein ID=NO05G04750.2-protein|Name=NO05G04750.2|organism=Nannochloropsis oceanica|type=polypeptide|length=333bp
MATRDLTKRFVEQRAEIKAKKPRPTHRSNDSSLSSSTNGPIPGDVHLLGN
SKDLEQGGPDWKAARSQLPPRWVDVVDRIDGIVRVIEAQMRELSMLHRKR
LLVSFDDSAEAKKEREIQSLTDAITDRFRGAERQLTAVGKQKGDESDSEI
KVRRNLQKSLACKIQRLSHAFRSQQKDYLSKLRAQTEGALGGGQFAFLEK
KEGVGEGEIIMVPDATSETGFSQTQVAAMQNVEMIVSERDAEITRIAEGI
EELAHVMKSLAGFVIDQGTVLDRIDYNMDMAVERVTQGVLQLETAEKIQK
QRGPMKCIFGLVFLIFVLLILQVVKHVPRRRR*
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mRNA from alignment at chr5:1234093..1236786-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G04750.2 ID=NO05G04750.2|Name=NO05G04750.2|organism=Nannochloropsis oceanica|type=mRNA|length=2694bp|location=Sequence derived from alignment at chr5:1234093..1236786- (Nannochloropsis oceanica)
TGTGCATTCGTTATCAACATTCTCAAGTTTTTGAAAAAGGAGCGACTCGT
CGACTCATCATCATCCTCCGTACTACTGAATTTTCCTCGTGGCTCTAGTA
CGACAATTTCCTCCCAGAATTGAATACACTTTTCACAGCTGTACTTTCTT
TGCCACTTGCACAAATCTGAAGAATTGTCGGCGAGACACATTAAGAGTAT
TTGTGTCCTTATTCTAATGAATGAGCTGCGGCATCCATGGGCCAATGTGC
GATTTAGCGATGCAATGCGACATGAGTTGTCATATGTCCCTCATTACATG
CTGAACAAATACACGCGTCCCACATTGTTGCGATTATAGGATGCTGAGGC
AGAGTTAATTGAGATACAAGACATGACGACAGATGGCGCGTGCGTGCACA
AGAATGGCTCTCCGAAAGAATGACTGTGCAAGCCGCACCGAGCATGCCCC
CATGGGTGCTAGATGGCCTTCTCCTCTTCTCCTTTGCTGCCCCAAAAAGT
GACTCACAAACACTCTTCGTTGGCTTATGAGGCACAGTCATCTCTGTCTA
TTAATCAGTAATTTCCTGACACTCTTTGCCCTCCATGAAAAATATGTCTG
CACAATTTGGATGCACATGACATCCATCATTCTCCTGTCTGCCGTCCTTC
CCCCTTCCCACCAGCCCCCGACAACATCCATCATATTTGCTACCCCCTCC
CAATAATTAAATGACAGAAGGGAAATGGCCACCCGGGATCTAACCAAGCG
CTTCGTGGAGCAGCGGGCCGAGATCAAGGTAAGGAAGTCACAGCAAGTGG
GGCATCTTATCATTTTGGGCCCTCCCCTCGCTACCCCTTCGACATGCTGG
TGGAATAGATTAAGTGCACACCTTGTGACTCTAATATCTTTCACCAAATC
ATTTAACGATGTCCTGGGAAAATAAATCCGACCATTGTATTTTATCAACC
CACATCTTCTCTTAACGTCTCGCCATTCCCTTTCCATCCCACCCACCCCC
GTAGGCGAAAAAGCCTCGCCCAACCCACCGGTCAAACGACAGCTCCCTCT
CTTCCTCCACCAACGGCCCTATCCCCGGGGATGTGCATTTATTGGGAAAT
TCAAAAGATCTCGAGCAGGGTGGGCCCGATTGGAAGGCGGCTCGCAGCCA
GTTGCCGCCGCGGTGGGTGGATGTTGTGGATAGGGTAAGTTGGAGTTTCA
TACGCGTCTTTTGGCACGGGTCGATAATCATTGAAACTCTCCAGAAGCAT
TTATGAGATTATATTTTACCCCTGGTGCCTATAGGAGATTTAATCTTCAT
CGAATAAACATGTCTCCGCCCGGGCTCCTTCCAACCCCACCCTCCCTCCC
TCACTCCCTCCTCCCCCAAGATTGATGGCATCGTCCGGGTCATCGAAGCA
CAGATGCGGGAGCTTTCCATGCTGCACCGCAAGCGCTTATTGGTGTCCTT
TGACGACTCTGCGGAAGCGAAAAAAGAGAGGGAGATACAATCGTTGACGG
ATGCGATAACGGATCGGTTTCGAGGGGCCGAGAGACAGCTGACAGCCGTT
GGGAAGCAGAAAGGGGACGAGAGCGATTCGGAGGTGTGGAGAAAGGAGAG
AGGGAGAAAGGGAGAAAGCTAGGAGGTTTCTGCGCGTGATCAGCATTATC
TCGGGTCTCAAGAAGTGACACTACTGACCCTTGCTTCCCTTCCCTCTCTC
TCTTCCTCACTGCCCTCCCCTCCAGATAAAAGTCCGTCGTAACCTACAAA
AATCCCTCGCTTGCAAGATACAACGTCTCTCCCATGCCTTCCGCTCTCAA
CAAAAGGATTACCTAAGCAAACTCCGAGCGCAGACGGAGGGGGCACTAGG
CGGAGGGCAGTTCGCTTTCTTGGAGAAAAAGGAAGGAGTTGGGGAGGGGG
AGATTATCATGGTTCCCGATGCGACCAGTGAGACTGGCTTCAGCCAGACC
CAGGTGGCAGCAATGCAGAACGTGGAAATGATAGTGAGTGAGAGGGACGC
GGAGATAACGCGGATCGCGGAGGGCATCGAGGAGCTGGCCCATGTCATGA
AGTCTCTGGCAGGCTTTGTGATAGACCAAGGGACGGTGCTGGACCGCATC
GATTACAACATGGGTGCGTTTCGTTTGGAGTCCATGCCCTCCTCCTCTCC
TTCCTTCCCTCCCTCACTTCCATTCTTCTGTCCCTCTCCTTCCCTCCCCT
TGGGCTGGCGTTTGGTCGGCAAGTGGTGTTGATTGGGTTGCCTTCTGCCT
CTCCGCGCCGTTGCATTGCTCCCTTTATATTTAATCCCCTCCCTCCCTCC
CTCCCTCCCTCACTTCCTCAGACATGGCGGTTGAGCGGGTCACCCAAGGC
GTCCTGCAGCTGGAAACAGCCGAAAAGATCCAAAAGCAGAGAGGACCGAT
GAAGTGCATCTTTGGCTTGGTCTTCCTTATTTTTGTGTTGTTAATACTCC
AAGTCGTAAAGCACGTCCCGAGACGGAGGCGGTAGGGGGGGAGGGAGAAA
AGGAAGAGAAGATGTACATTGGCATGTATGTAATGGGTCGTGCGGGTGTG
TGTGTGGGTGGGGCGCGTGGCTTACTGCTGCATGTTCGAAAAAAGAGGAA
GACGGAAGGTCAGTCCAGGAGGATGAAAGAGATATCGAGAAACATCCATG
TGCAAAAAGCGAAGAAAGAAAATGAGTCGCCAGAAGATAGGCAA
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Coding sequence (CDS) from alignment at chr5:1234093..1236786-

>NO05G04750.2 ID=NO05G04750.2|Name=NO05G04750.2|organism=Nannochloropsis oceanica|type=CDS|length=999bp|location=Sequence derived from alignment at chr5:1234093..1236786- (Nannochloropsis oceanica)
ATGGCCACCCGGGATCTAACCAAGCGCTTCGTGGAGCAGCGGGCCGAGAT
CAAGGCGAAAAAGCCTCGCCCAACCCACCGGTCAAACGACAGCTCCCTCT
CTTCCTCCACCAACGGCCCTATCCCCGGGGATGTGCATTTATTGGGAAAT
TCAAAAGATCTCGAGCAGGGTGGGCCCGATTGGAAGGCGGCTCGCAGCCA
GTTGCCGCCGCGGTGGGTGGATGTTGTGGATAGGATTGATGGCATCGTCC
GGGTCATCGAAGCACAGATGCGGGAGCTTTCCATGCTGCACCGCAAGCGC
TTATTGGTGTCCTTTGACGACTCTGCGGAAGCGAAAAAAGAGAGGGAGAT
ACAATCGTTGACGGATGCGATAACGGATCGGTTTCGAGGGGCCGAGAGAC
AGCTGACAGCCGTTGGGAAGCAGAAAGGGGACGAGAGCGATTCGGAGATA
AAAGTCCGTCGTAACCTACAAAAATCCCTCGCTTGCAAGATACAACGTCT
CTCCCATGCCTTCCGCTCTCAACAAAAGGATTACCTAAGCAAACTCCGAG
CGCAGACGGAGGGGGCACTAGGCGGAGGGCAGTTCGCTTTCTTGGAGAAA
AAGGAAGGAGTTGGGGAGGGGGAGATTATCATGGTTCCCGATGCGACCAG
TGAGACTGGCTTCAGCCAGACCCAGGTGGCAGCAATGCAGAACGTGGAAA
TGATAGTGAGTGAGAGGGACGCGGAGATAACGCGGATCGCGGAGGGCATC
GAGGAGCTGGCCCATGTCATGAAGTCTCTGGCAGGCTTTGTGATAGACCA
AGGGACGGTGCTGGACCGCATCGATTACAACATGGACATGGCGGTTGAGC
GGGTCACCCAAGGCGTCCTGCAGCTGGAAACAGCCGAAAAGATCCAAAAG
CAGAGAGGACCGATGAAGTGCATCTTTGGCTTGGTCTTCCTTATTTTTGT
GTTGTTAATACTCCAAGTCGTAAAGCACGTCCCGAGACGGAGGCGGTAG
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Synonyms
Publications