NO05G04750.1, NO05G04750.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G04750.1
Unique NameNO05G04750.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1378
Alignment locationchr5:1234093..1236006 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1234093..1236006 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G04750.1 vs.
Match: EWM27922.1 (qa- syp4 tlg2p syntaxin 16-type [Nannochloropsis gaditana])

HSP 1 Score: 311.2 bits (796), Expect = 2.800e-81
Identity = 165/242 (68.18%), Postives = 195/242 (80.58%), Query Frame = 0 
Query:    1 MRELSMLHRKRLLVSFDDSAEAKKEREIQSLTDAITDRFRGAERQLTAVGKQKGDESDSEIKVRRNLQKSLACKIQRLSHAFRSQQKDYLSKLRAQTEGALGGGQFAFLEKKEGVGEGEIIMVPDATSETGFSQTQVAAMQNVEMIVSERDAEITRIAEGIEELAHVMKSLAGFVIDQGTVLDRIDYNMDMAVERVTQGVLQLETAEKIQKQRGPMKCIFGLVFLIFVLLILQVVKHVPRRR 243
            M+ELS LHRKRLLVSFD+ AEA KE+EI +LT+AIT++FR  ER+LTAVG Q   ESD+E+KVRRNLQ+S+A K QRLSHAFR QQKDYL KLRAQ EGA+GGG+FAFL+K EG   GE ++VPD  SETGF Q QV  +++ E +V ERD+EI RIAEGIE LAHVMK L   VIDQG+VLDRIDYN+DMAV+RV QGV QLE  EKIQKQ G   CI  L+FLIF LL++QV+KH PR+R
Sbjct:   71 MKELSRLHRKRLLVSFDEKAEAGKEQEILALTEAITEQFRVVERKLTAVGGQMEGESDAEVKVRRNLQRSMASKTQRLSHAFRFQQKDYLKKLRAQKEGAMGGGEFAFLDKDEG---GEPVLVPDNRSETGFRQAQVTVLESAEALVQERDSEIARIAEGIEALAHVMKRLGELVIDQGSVLDRIDYNIDMAVDRVQQGVTQLEATEKIQKQGGATSCILTLIFLIFALLVVQVIKHAPRKR 309
The following BLAST results are available for this feature:
BLAST of NO05G04750.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27922.12.800e-8168.18qa- syp4 tlg2p syntaxin 16-type [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G04750NO05G04750Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G04750.1NO05G04750.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G04750.1.cds1NO05G04750.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G04750.1.cds2NO05G04750.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G04750.1.cds3NO05G04750.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G04750.1 ID=NO05G04750.1|Name=NO05G04750.1|organism=Nannochloropsis oceanica|type=mRNA|length=1378bp
AAGGAAGTCACAGCAAGTGGGGCATCTTATCATTTTGGGCCCTCCCCTCG
CTACCCCTTCGACATGCTGGTGGAATAGATTAAGTGCACACCTTGTGACT
CTAATATCTTTCACCAAATCATTTAACGATGTCCTGGGAAAATAAATCCG
ACCATTGTATTTTATCAACCCACATCTTCTCTTAACGTCTCGCCATTCCC
TTTCCATCCCACCCACCCCCGTAGGCGAAAAAGCCTCGCCCAACCCACCG
GTCAAACGACAGCTCCCTCTCTTCCTCCACCAACGGCCCTATCCCCGGGG
ATGTGCATTTATTGGGAAATTCAAAAGATCTCGAGCAGGGTGGGCCCGAT
TGGAAGGCGGCTCGCAGCCAGTTGCCGCCGCGGTGGGTGGATGTTGTGGA
TAGGATTGATGGCATCGTCCGGGTCATCGAAGCACAGATGCGGGAGCTTT
CCATGCTGCACCGCAAGCGCTTATTGGTGTCCTTTGACGACTCTGCGGAA
GCGAAAAAAGAGAGGGAGATACAATCGTTGACGGATGCGATAACGGATCG
GTTTCGAGGGGCCGAGAGACAGCTGACAGCCGTTGGGAAGCAGAAAGGGG
ACGAGAGCGATTCGGAGATAAAAGTCCGTCGTAACCTACAAAAATCCCTC
GCTTGCAAGATACAACGTCTCTCCCATGCCTTCCGCTCTCAACAAAAGGA
TTACCTAAGCAAACTCCGAGCGCAGACGGAGGGGGCACTAGGCGGAGGGC
AGTTCGCTTTCTTGGAGAAAAAGGAAGGAGTTGGGGAGGGGGAGATTATC
ATGGTTCCCGATGCGACCAGTGAGACTGGCTTCAGCCAGACCCAGGTGGC
AGCAATGCAGAACGTGGAAATGATAGTGAGTGAGAGGGACGCGGAGATAA
CGCGGATCGCGGAGGGCATCGAGGAGCTGGCCCATGTCATGAAGTCTCTG
GCAGGCTTTGTGATAGACCAAGGGACGGTGCTGGACCGCATCGATTACAA
CATGGACATGGCGGTTGAGCGGGTCACCCAAGGCGTCCTGCAGCTGGAAA
CAGCCGAAAAGATCCAAAAGCAGAGAGGACCGATGAAGTGCATCTTTGGC
TTGGTCTTCCTTATTTTTGTGTTGTTAATACTCCAAGTCGTAAAGCACGT
CCCGAGACGGAGGCGGTAGGGGGGGAGGGAGAAAAGGAAGAGAAGATGTA
CATTGGCATGTATGTAATGGGTCGTGCGGGTGTGTGTGTGGGTGGGGCGC
GTGGCTTACTGCTGCATGTTCGAAAAAAGAGGAAGACGGAAGGTCAGTCC
AGGAGGATGAAAGAGATATCGAGAAACATCCATGTGCAAAAAGCGAAGAA
AGAAAATGAGTCGCCAGAAGATAGGCAA
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protein sequence of NO05G04750.1

>NO05G04750.1-protein ID=NO05G04750.1-protein|Name=NO05G04750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=244bp
MRELSMLHRKRLLVSFDDSAEAKKEREIQSLTDAITDRFRGAERQLTAVG
KQKGDESDSEIKVRRNLQKSLACKIQRLSHAFRSQQKDYLSKLRAQTEGA
LGGGQFAFLEKKEGVGEGEIIMVPDATSETGFSQTQVAAMQNVEMIVSER
DAEITRIAEGIEELAHVMKSLAGFVIDQGTVLDRIDYNMDMAVERVTQGV
LQLETAEKIQKQRGPMKCIFGLVFLIFVLLILQVVKHVPRRRR*
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mRNA from alignment at chr5:1234093..1236006-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G04750.1 ID=NO05G04750.1|Name=NO05G04750.1|organism=Nannochloropsis oceanica|type=mRNA|length=1914bp|location=Sequence derived from alignment at chr5:1234093..1236006- (Nannochloropsis oceanica)
AAGGAAGTCACAGCAAGTGGGGCATCTTATCATTTTGGGCCCTCCCCTCG
CTACCCCTTCGACATGCTGGTGGAATAGATTAAGTGCACACCTTGTGACT
CTAATATCTTTCACCAAATCATTTAACGATGTCCTGGGAAAATAAATCCG
ACCATTGTATTTTATCAACCCACATCTTCTCTTAACGTCTCGCCATTCCC
TTTCCATCCCACCCACCCCCGTAGGCGAAAAAGCCTCGCCCAACCCACCG
GTCAAACGACAGCTCCCTCTCTTCCTCCACCAACGGCCCTATCCCCGGGG
ATGTGCATTTATTGGGAAATTCAAAAGATCTCGAGCAGGGTGGGCCCGAT
TGGAAGGCGGCTCGCAGCCAGTTGCCGCCGCGGTGGGTGGATGTTGTGGA
TAGGGTAAGTTGGAGTTTCATACGCGTCTTTTGGCACGGGTCGATAATCA
TTGAAACTCTCCAGAAGCATTTATGAGATTATATTTTACCCCTGGTGCCT
ATAGGAGATTTAATCTTCATCGAATAAACATGTCTCCGCCCGGGCTCCTT
CCAACCCCACCCTCCCTCCCTCACTCCCTCCTCCCCCAAGATTGATGGCA
TCGTCCGGGTCATCGAAGCACAGATGCGGGAGCTTTCCATGCTGCACCGC
AAGCGCTTATTGGTGTCCTTTGACGACTCTGCGGAAGCGAAAAAAGAGAG
GGAGATACAATCGTTGACGGATGCGATAACGGATCGGTTTCGAGGGGCCG
AGAGACAGCTGACAGCCGTTGGGAAGCAGAAAGGGGACGAGAGCGATTCG
GAGGTGTGGAGAAAGGAGAGAGGGAGAAAGGGAGAAAGCTAGGAGGTTTC
TGCGCGTGATCAGCATTATCTCGGGTCTCAAGAAGTGACACTACTGACCC
TTGCTTCCCTTCCCTCTCTCTCTTCCTCACTGCCCTCCCCTCCAGATAAA
AGTCCGTCGTAACCTACAAAAATCCCTCGCTTGCAAGATACAACGTCTCT
CCCATGCCTTCCGCTCTCAACAAAAGGATTACCTAAGCAAACTCCGAGCG
CAGACGGAGGGGGCACTAGGCGGAGGGCAGTTCGCTTTCTTGGAGAAAAA
GGAAGGAGTTGGGGAGGGGGAGATTATCATGGTTCCCGATGCGACCAGTG
AGACTGGCTTCAGCCAGACCCAGGTGGCAGCAATGCAGAACGTGGAAATG
ATAGTGAGTGAGAGGGACGCGGAGATAACGCGGATCGCGGAGGGCATCGA
GGAGCTGGCCCATGTCATGAAGTCTCTGGCAGGCTTTGTGATAGACCAAG
GGACGGTGCTGGACCGCATCGATTACAACATGGGTGCGTTTCGTTTGGAG
TCCATGCCCTCCTCCTCTCCTTCCTTCCCTCCCTCACTTCCATTCTTCTG
TCCCTCTCCTTCCCTCCCCTTGGGCTGGCGTTTGGTCGGCAAGTGGTGTT
GATTGGGTTGCCTTCTGCCTCTCCGCGCCGTTGCATTGCTCCCTTTATAT
TTAATCCCCTCCCTCCCTCCCTCCCTCCCTCACTTCCTCAGACATGGCGG
TTGAGCGGGTCACCCAAGGCGTCCTGCAGCTGGAAACAGCCGAAAAGATC
CAAAAGCAGAGAGGACCGATGAAGTGCATCTTTGGCTTGGTCTTCCTTAT
TTTTGTGTTGTTAATACTCCAAGTCGTAAAGCACGTCCCGAGACGGAGGC
GGTAGGGGGGGAGGGAGAAAAGGAAGAGAAGATGTACATTGGCATGTATG
TAATGGGTCGTGCGGGTGTGTGTGTGGGTGGGGCGCGTGGCTTACTGCTG
CATGTTCGAAAAAAGAGGAAGACGGAAGGTCAGTCCAGGAGGATGAAAGA
GATATCGAGAAACATCCATGTGCAAAAAGCGAAGAAAGAAAATGAGTCGC
CAGAAGATAGGCAA
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Coding sequence (CDS) from alignment at chr5:1234093..1236006-

>NO05G04750.1 ID=NO05G04750.1|Name=NO05G04750.1|organism=Nannochloropsis oceanica|type=CDS|length=732bp|location=Sequence derived from alignment at chr5:1234093..1236006- (Nannochloropsis oceanica)
ATGCGGGAGCTTTCCATGCTGCACCGCAAGCGCTTATTGGTGTCCTTTGA
CGACTCTGCGGAAGCGAAAAAAGAGAGGGAGATACAATCGTTGACGGATG
CGATAACGGATCGGTTTCGAGGGGCCGAGAGACAGCTGACAGCCGTTGGG
AAGCAGAAAGGGGACGAGAGCGATTCGGAGATAAAAGTCCGTCGTAACCT
ACAAAAATCCCTCGCTTGCAAGATACAACGTCTCTCCCATGCCTTCCGCT
CTCAACAAAAGGATTACCTAAGCAAACTCCGAGCGCAGACGGAGGGGGCA
CTAGGCGGAGGGCAGTTCGCTTTCTTGGAGAAAAAGGAAGGAGTTGGGGA
GGGGGAGATTATCATGGTTCCCGATGCGACCAGTGAGACTGGCTTCAGCC
AGACCCAGGTGGCAGCAATGCAGAACGTGGAAATGATAGTGAGTGAGAGG
GACGCGGAGATAACGCGGATCGCGGAGGGCATCGAGGAGCTGGCCCATGT
CATGAAGTCTCTGGCAGGCTTTGTGATAGACCAAGGGACGGTGCTGGACC
GCATCGATTACAACATGGACATGGCGGTTGAGCGGGTCACCCAAGGCGTC
CTGCAGCTGGAAACAGCCGAAAAGATCCAAAAGCAGAGAGGACCGATGAA
GTGCATCTTTGGCTTGGTCTTCCTTATTTTTGTGTTGTTAATACTCCAAG
TCGTAAAGCACGTCCCGAGACGGAGGCGGTAG
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Synonyms
Publications