NO05G04470.1, NO05G04470.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO05G04470.1
Unique Name	NO05G04470.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1089
Alignment location	chr5:1160152..1161240 -

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr5	genome	chr5:1160152..1161240 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO05G04470.1 vs.

BLAST of NO05G04470.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO05G04470	NO05G04470	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO05G04470.1	NO05G04470.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO05G04470.1.cds1	NO05G04470.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr5:1160152..1161240-
coding sequence from alignment at chr5:1160152..1161240-

mRNA sequence

>NO05G04470.1 ID=NO05G04470.1|Name=NO05G04470.1|organism=Nannochloropsis oceanica|type=mRNA|length=1089bp
ATGAATTTCGCTTCATTTGTGTCGTTGGGGCGAAGAAAGCACAGTCAGCG
TTCGCCTTACGAAGGTGCTAGCCATGGGAGCGCGCCCTTGCCTCAATCCT
CCTCTTCCTCCTCCACCTTTGCTCACGTGTCCAGTGTACTGCAATATGCC
GCCTATCCCTTGATCTCCAGCAGCAGCAGCAGCAGCAGCAGTAGCAGCAG
CAACAACAACAACAACAACAGCATCAGTAGTAGCAGCATTAGTAGTAGCA
GCAGCAGGAGTAGTAATAGTAGCAGCAGCAGTGGTAGTGGCAGCAGTAGT
CGCGTGGGTGTTGGAGGGGGGAAGCGCCGTCACTCAGGCGGAGGAATGCC
CTCGACCTCCTACCATCCTCTCCTCCAGCAGCACCAAACTCTACTCCAAT
CGCAGCCACTCCTCTATCATCAGCAACACCACCTCTCTAACTACCACCAC
CACCACCACCAGCAGCAGCAGCCGTCCGCTGACCTATACCCGGGTACGTC
CATTCTTTCTTCCTCCTCTTCCTGGCCTGCTCCGGGCTTAGCCCCTGCAG
CGGCGGCTCTACTGCCCTCTCTCGGGGGAGCAGGGGCGATAGACGGCATG
GCGGACGGAGCCTTTGGAATAAGGGGTATTTCCTTGCAGCAGCAGCAGCA
ACAGCAGCAACAGCAGCAACAGCAGCAAAACCTTTTGCACCATCAGCAGC
TTCATCAGCAGCAGATATTCTCTCACTTGCAGCAAGGAGCCGGAAGAGAT
ACGAATGAGCCTGACTTCCAGCAGCAGCAACAGCAGCTCCAAACACCAGT
GCCCGCAGCAGCAGCAACAGCAGCAGCAGGGGGGAACGGACCGTTACCCG
TCCATCGGACATCGCTCCACCAACGCCTCGTCCAAGCAGTCGTCAATTCC
AAATCGCCTAGTAAGTTTATGTCCTGGCAAAAGATTGGCACCTCTGCCCT
ACCTGTTCCCTCGCCCGGCAAGGCTGCTGCTGCAGATGGAGCTGTTGCTG
CTGCGGCTGCTGCTCCAGGAAGCAACAGTAAGCAGGCAGGTGTTACCCGT
CCCTCGGCGGGGGGTTCGACTTCGAGGAATTCATGGTGA

protein sequence of NO05G04470.1

>NO05G04470.1-protein ID=NO05G04470.1-protein|Name=NO05G04470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=363bp
MNFASFVSLGRRKHSQRSPYEGASHGSAPLPQSSSSSSTFAHVSSVLQYA
AYPLISSSSSSSSSSSSNNNNNNSISSSSISSSSSRSSNSSSSSGSGSSS
RVGVGGGKRRHSGGGMPSTSYHPLLQQHQTLLQSQPLLYHQQHHLSNYHH
HHHQQQQPSADLYPGTSILSSSSSWPAPGLAPAAAALLPSLGGAGAIDGM
ADGAFGIRGISLQQQQQQQQQQQQQQNLLHHQQLHQQQIFSHLQQGAGRD
TNEPDFQQQQQQLQTPVPAAAATAAAGGNGPLPVHRTSLHQRLVQAVVNS
KSPSKFMSWQKIGTSALPVPSPGKAAAADGAVAAAAAAPGSNSKQAGVTR
PSAGGSTSRNSW*

mRNA from alignment at chr5:1160152..1161240-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO05G04470.1 ID=NO05G04470.1|Name=NO05G04470.1|organism=Nannochloropsis oceanica|type=mRNA|length=1089bp|location=Sequence derived from alignment at chr5:1160152..1161240- (Nannochloropsis oceanica)
ATGAATTTCGCTTCATTTGTGTCGTTGGGGCGAAGAAAGCACAGTCAGCG
TTCGCCTTACGAAGGTGCTAGCCATGGGAGCGCGCCCTTGCCTCAATCCT
CCTCTTCCTCCTCCACCTTTGCTCACGTGTCCAGTGTACTGCAATATGCC
GCCTATCCCTTGATCTCCAGCAGCAGCAGCAGCAGCAGCAGTAGCAGCAG
CAACAACAACAACAACAACAGCATCAGTAGTAGCAGCATTAGTAGTAGCA
GCAGCAGGAGTAGTAATAGTAGCAGCAGCAGTGGTAGTGGCAGCAGTAGT
CGCGTGGGTGTTGGAGGGGGGAAGCGCCGTCACTCAGGCGGAGGAATGCC
CTCGACCTCCTACCATCCTCTCCTCCAGCAGCACCAAACTCTACTCCAAT
CGCAGCCACTCCTCTATCATCAGCAACACCACCTCTCTAACTACCACCAC
CACCACCACCAGCAGCAGCAGCCGTCCGCTGACCTATACCCGGGTACGTC
CATTCTTTCTTCCTCCTCTTCCTGGCCTGCTCCGGGCTTAGCCCCTGCAG
CGGCGGCTCTACTGCCCTCTCTCGGGGGAGCAGGGGCGATAGACGGCATG
GCGGACGGAGCCTTTGGAATAAGGGGTATTTCCTTGCAGCAGCAGCAGCA
ACAGCAGCAACAGCAGCAACAGCAGCAAAACCTTTTGCACCATCAGCAGC
TTCATCAGCAGCAGATATTCTCTCACTTGCAGCAAGGAGCCGGAAGAGAT
ACGAATGAGCCTGACTTCCAGCAGCAGCAACAGCAGCTCCAAACACCAGT
GCCCGCAGCAGCAGCAACAGCAGCAGCAGGGGGGAACGGACCGTTACCCG
TCCATCGGACATCGCTCCACCAACGCCTCGTCCAAGCAGTCGTCAATTCC
AAATCGCCTAGTAAGTTTATGTCCTGGCAAAAGATTGGCACCTCTGCCCT
ACCTGTTCCCTCGCCCGGCAAGGCTGCTGCTGCAGATGGAGCTGTTGCTG
CTGCGGCTGCTGCTCCAGGAAGCAACAGTAAGCAGGCAGGTGTTACCCGT
CCCTCGGCGGGGGGTTCGACTTCGAGGAATTCATGGTGA

Coding sequence (CDS) from alignment at chr5:1160152..1161240-

>NO05G04470.1 ID=NO05G04470.1|Name=NO05G04470.1|organism=Nannochloropsis oceanica|type=CDS|length=1089bp|location=Sequence derived from alignment at chr5:1160152..1161240- (Nannochloropsis oceanica)
ATGAATTTCGCTTCATTTGTGTCGTTGGGGCGAAGAAAGCACAGTCAGCG
TTCGCCTTACGAAGGTGCTAGCCATGGGAGCGCGCCCTTGCCTCAATCCT
CCTCTTCCTCCTCCACCTTTGCTCACGTGTCCAGTGTACTGCAATATGCC
GCCTATCCCTTGATCTCCAGCAGCAGCAGCAGCAGCAGCAGTAGCAGCAG
CAACAACAACAACAACAACAGCATCAGTAGTAGCAGCATTAGTAGTAGCA
GCAGCAGGAGTAGTAATAGTAGCAGCAGCAGTGGTAGTGGCAGCAGTAGT
CGCGTGGGTGTTGGAGGGGGGAAGCGCCGTCACTCAGGCGGAGGAATGCC
CTCGACCTCCTACCATCCTCTCCTCCAGCAGCACCAAACTCTACTCCAAT
CGCAGCCACTCCTCTATCATCAGCAACACCACCTCTCTAACTACCACCAC
CACCACCACCAGCAGCAGCAGCCGTCCGCTGACCTATACCCGGGTACGTC
CATTCTTTCTTCCTCCTCTTCCTGGCCTGCTCCGGGCTTAGCCCCTGCAG
CGGCGGCTCTACTGCCCTCTCTCGGGGGAGCAGGGGCGATAGACGGCATG
GCGGACGGAGCCTTTGGAATAAGGGGTATTTCCTTGCAGCAGCAGCAGCA
ACAGCAGCAACAGCAGCAACAGCAGCAAAACCTTTTGCACCATCAGCAGC
TTCATCAGCAGCAGATATTCTCTCACTTGCAGCAAGGAGCCGGAAGAGAT
ACGAATGAGCCTGACTTCCAGCAGCAGCAACAGCAGCTCCAAACACCAGT
GCCCGCAGCAGCAGCAACAGCAGCAGCAGGGGGGAACGGACCGTTACCCG
TCCATCGGACATCGCTCCACCAACGCCTCGTCCAAGCAGTCGTCAATTCC
AAATCGCCTAGTAAGTTTATGTCCTGGCAAAAGATTGGCACCTCTGCCCT
ACCTGTTCCCTCGCCCGGCAAGGCTGCTGCTGCAGATGGAGCTGTTGCTG
CTGCGGCTGCTGCTCCAGGAAGCAACAGTAAGCAGGCAGGTGTTACCCGT
CCCTCGGCGGGGGGTTCGACTTCGAGGAATTCATGGTGA

Synonyms

Publications