NO05G04360.1, NO05G04360.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO05G04360.1
Unique Name	NO05G04360.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2793
Alignment location	chr5:1122375..1125167 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr5	genome	chr5:1122375..1125167 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO05G04360.1 vs.
Match: XP_012207213.1 (hypothetical protein SPRG_12057 [Saprolegnia parasitica CBS 223.65]; KDO22070.1 hypothetical protein SPRG_12057 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 68.6 bits (166), Expect = 7.700e-8
Identity = 56/184 (30.43%), Postives = 83/184 (45.11%), Query Frame = 0

Query:   59 VRHRYSDFEALSRGLQRRFGTEGMLIPPLPPKGLRKKHDVDFIKQRMNGLQFFMEGIAASPFLFHDILTQKFLKRTTTEGAGSIVAILDEGDNSVGQIIPLPSSSSSSKPPSSPLSSASMAAMH-NQGYIQWTEFLSSFVLPPDPDVMVEKVRIELDSCEKVLSEVMEGGKALAAGFGQYARGL 242
            VR R+SDFE L   L  R+   GML+P LP K + K     FI+ RM GL  F+  + ASPFL HD                S+V  L+ GD+     I                  +S+   H  +G++QW + L    LP D D M+  ++ + +  +K  ++++   K LA     YA+ L
Sbjct:   77 VRRRFSDFEWLHTTLCARY--IGMLLPSLPEKTVYKTEA--FIRGRMRGLALFLNHVIASPFLRHD---------------ASVVGFLNVGDDGEWDHI----------------KKSSVVMEHAGEGHMQWMKCLLHTTLPDDADQMLLNLKRDAEFVDKACNDLLLCSKRLADKSAAYAKEL 225

The following BLAST results are available for this feature:

BLAST of NO05G04360.1 vs.

BLAST of NO05G04360.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
XP_012207213.1	7.700e-8	30.43	hypothetical protein SPRG_12057 [Saprolegnia paras...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO05G04360	NO05G04360	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO05G04360.1	NO05G04360.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO05G04360.1.cds1	NO05G04360.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr5:1122375..1125167-
coding sequence from alignment at chr5:1122375..1125167-

mRNA sequence

>NO05G04360.1 ID=NO05G04360.1|Name=NO05G04360.1|organism=Nannochloropsis oceanica|type=mRNA|length=2793bp
ATATGGGCCAACCTCGGTGTTTTATATAAATATACAATACCTTCTTCTAC
TCCTTCCCTGCTCATGCTTTTTGGGTCCCTCCTGCCATGATCTTTTTGCG
TCCATGCACTCATCACTACACCCATAGAGGACGATAGTTATCAGAAGAAC
AGGCGGCAGGAGAAGCGGCGGCGGCAGCAGGAAAAGACTCACTCAAAAGT
GTAAGAGCAAAAACACCATCATCACAGGCAGAGAGGGCAGGACCAGCGGT
GGTTGGGGCGGTAGCACCATCCATCTCTTCTCAACATCTCGTCGCGATAT
GAGTAGCTTCGTCCAAGAGTACGAGCAACATCGACCCTGCATCGTCGTGG
AACTCCCCGAGCTGCGCAAAACAAGCGGGGGCCTCTTCTCCGCTCGTGAG
GTGATGACTTACGCCGTTTGTGTCCAGGGTGGCAATTCCTTCGAGAGCCC
GCGGCCCTTTCCCAAGCACGGGGTCCGACATCGCTATTCGGATTTTGAGG
CACTTTCACGGGGACTGCAACGACGCTTTGGCACGGAGGGGATGTTAATC
CCACCGTTGCCCCCAAAGGGCCTGCGGAAAAAGCACGATGTCGACTTTAT
TAAGCAGCGAATGAATGGCTTGCAGTTTTTCATGGAAGGCATCGCTGCTT
CTCCCTTCTTATTCCATGACATACTCACGCAAAAATTTCTGAAGCGCACC
ACCACCGAAGGTGCGGGCTCGATTGTGGCAATCCTGGATGAAGGAGACAA
CTCTGTCGGACAAATTATTCCCTTGCCCTCCTCCTCCTCTTCTTCAAAGC
CGCCGTCCTCCCCCCTCTCTTCCGCCTCTATGGCTGCCATGCATAATCAG
GGCTACATACAATGGACTGAATTTCTGTCCTCTTTCGTTCTGCCACCCGA
CCCGGATGTGATGGTGGAAAAGGTCCGCATTGAGCTCGATTCATGCGAGA
AGGTACTGAGTGAGGTGATGGAGGGGGGCAAGGCATTGGCGGCTGGTTTT
GGGCAGTACGCGCGGGGGTTGCAAGCCTTTAGTTACTCTATGCATGTCCT
GGCAGAAGGGGAGCGGAGGGTGGAGGTTTTGAACAAAGTCGAGGTAACGG
AGGGTAGGGAGGATAGTAGTAGCGCCGAGCAAGAGAGCAGCAACGACAAC
GCTTCATCTCCACTGAGGGCGCTCTACACCATACCCCTCCCCGAGCTCGC
CTCCCACACCGCTGATCTCTACGCAAACATCGTCCCTACTTTCCTGGCCG
CCCCGGGACAAGCCTCCTTCTTTTTCTCCCCCCTCATCGAGTACGAGCAA
AGCCGCATCCAATCCCTCAAAACTCTCCTCGCAGGTCGCAACGACTTACG
CACCTCCATCCTCAAGCTCCAAAAAAAGGTCGAAGGTCTCCGCCAGCCCT
CCGCCTCCTCTGCCGATCGCGAACTCTACGAAAGCCGCCTTGCTCAAGCA
GAAGTCCACCTCTACAAATTCACCAAAGCCCTCCTCTGTTACACCCTCCC
TGCAGTCGCGCAACAACGCACCTGGAACCTCAACCGAGCTTTGGCCAACC
TCGCAGCGATTTCGACACCAGCAGCCTCAGCATCGTTTGGTCAAACCATG
GGTTATTTGAAAGTGTTAGGATGGGATGCAGCGGAGGTCGTGGAGGAAGC
CAATGAGAACGGGGTAGCCTTAATGGTGCCACATATACCGGTCATAGCCT
TGCCTCAAGCAGGAGAGGAGAAGAATATGCAGCGGGAGGAGCGGCAGAAG
GAAACGACAGTGCTGAAACAAAAAAGTCCTGCCGCAACAGCATCGGCGGC
GGTGGTGGCGGCGCGCAAACCAGGTAGTTTTTTGTACGACAAGCCCTTAC
CTTCTCCTGTAGCGGTGGAGAGTGCAGGTGGAGAGGAGGAGAGAAAGAGA
GGTAGCGGTCTAAGCACCAGCGACAGCGGCGGAGATGGTAATAGCATTAC
TACTACCTGGCCGATGACGGACCCTATCGTGACAGTGGCTTCCTCATTGG
GATCAGGCGACCGCAAGGGAGCCAGTGGGAAAGCTCCCTGGGAAAGCGAC
GACGAGGTGGAGAACCCGTTTGAGAAGGAGGAGGGGGTGTAAGCCAGTAC
GTCCAGGTTTTGAGTTTTTTTTTCAGAAGCTAGATAAACATAAAATTTCT
CCATGATTTGTACAGTCAAGTCGCCGTACGAAGCGCAAGCAGAAAGAGAG
CGAGAAATGAAGCCCGACAGAGAAAAAGTAATGGAGTGTGGTTGAGGGAG
TGTCTGAATATGCGTGTGTGATATAGGGCACGGCGTCAGAAAGAAAGGCG
ATGGGTTTAAGAAGCGGATGGATTGAGTACCTGATGCAGGTGCATGATCG
TCTTCCAGTTATGCATGTATTAGAAAAAAATTAAGTGAAATGCAAATGTA
TGATAGGGGACACACACACAAGGAAGTCGTTATGTCTTTTTTCACCAGAG
AATTGTGTGGTTTCTCTCATGGTACGTACGGATTACTTAGTGAACAGGAA
ACAGGACAAGAAGCAAGAAGAGGTTTAAAATTCAAGATTGAATTCAGGAG
GGAAAGATGCAGGAGAAAAGCTGCATGGTAAAGAGAGTGTATATTCTATG
GCTGTGTGTCAGGGTCGTGCGTAAGCGAGTGTTTACTTCTATCCACTCGC
ACACACTGATAATTTACAGCATTTGGTGCGACAAACTAATAGCGGACAAG
ATGTGACGATAACAAATCCTCACATTTCATTTATATAGCACGGAATGAAC
AAGAGAGACTACAACACTCAAACGAAATAGTCTTGCGTCTTCA

protein sequence of NO05G04360.1

>NO05G04360.1-protein ID=NO05G04360.1-protein|Name=NO05G04360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=598bp
MSSFVQEYEQHRPCIVVELPELRKTSGGLFSAREVMTYAVCVQGGNSFES
PRPFPKHGVRHRYSDFEALSRGLQRRFGTEGMLIPPLPPKGLRKKHDVDF
IKQRMNGLQFFMEGIAASPFLFHDILTQKFLKRTTTEGAGSIVAILDEGD
NSVGQIIPLPSSSSSSKPPSSPLSSASMAAMHNQGYIQWTEFLSSFVLPP
DPDVMVEKVRIELDSCEKVLSEVMEGGKALAAGFGQYARGLQAFSYSMHV
LAEGERRVEVLNKVEVTEGREDSSSAEQESSNDNASSPLRALYTIPLPEL
ASHTADLYANIVPTFLAAPGQASFFFSPLIEYEQSRIQSLKTLLAGRNDL
RTSILKLQKKVEGLRQPSASSADRELYESRLAQAEVHLYKFTKALLCYTL
PAVAQQRTWNLNRALANLAAISTPAASASFGQTMGYLKVLGWDAAEVVEE
ANENGVALMVPHIPVIALPQAGEEKNMQREERQKETTVLKQKSPAATASA
AVVAARKPGSFLYDKPLPSPVAVESAGGEEERKRGSGLSTSDSGGDGNSI
TTTWPMTDPIVTVASSLGSGDRKGASGKAPWESDDEVENPFEKEEGV*

mRNA from alignment at chr5:1122375..1125167-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO05G04360.1 ID=NO05G04360.1|Name=NO05G04360.1|organism=Nannochloropsis oceanica|type=mRNA|length=2793bp|location=Sequence derived from alignment at chr5:1122375..1125167- (Nannochloropsis oceanica)
ATATGGGCCAACCTCGGTGTTTTATATAAATATACAATACCTTCTTCTAC
TCCTTCCCTGCTCATGCTTTTTGGGTCCCTCCTGCCATGATCTTTTTGCG
TCCATGCACTCATCACTACACCCATAGAGGACGATAGTTATCAGAAGAAC
AGGCGGCAGGAGAAGCGGCGGCGGCAGCAGGAAAAGACTCACTCAAAAGT
GTAAGAGCAAAAACACCATCATCACAGGCAGAGAGGGCAGGACCAGCGGT
GGTTGGGGCGGTAGCACCATCCATCTCTTCTCAACATCTCGTCGCGATAT
GAGTAGCTTCGTCCAAGAGTACGAGCAACATCGACCCTGCATCGTCGTGG
AACTCCCCGAGCTGCGCAAAACAAGCGGGGGCCTCTTCTCCGCTCGTGAG
GTGATGACTTACGCCGTTTGTGTCCAGGGTGGCAATTCCTTCGAGAGCCC
GCGGCCCTTTCCCAAGCACGGGGTCCGACATCGCTATTCGGATTTTGAGG
CACTTTCACGGGGACTGCAACGACGCTTTGGCACGGAGGGGATGTTAATC
CCACCGTTGCCCCCAAAGGGCCTGCGGAAAAAGCACGATGTCGACTTTAT
TAAGCAGCGAATGAATGGCTTGCAGTTTTTCATGGAAGGCATCGCTGCTT
CTCCCTTCTTATTCCATGACATACTCACGCAAAAATTTCTGAAGCGCACC
ACCACCGAAGGTGCGGGCTCGATTGTGGCAATCCTGGATGAAGGAGACAA
CTCTGTCGGACAAATTATTCCCTTGCCCTCCTCCTCCTCTTCTTCAAAGC
CGCCGTCCTCCCCCCTCTCTTCCGCCTCTATGGCTGCCATGCATAATCAG
GGCTACATACAATGGACTGAATTTCTGTCCTCTTTCGTTCTGCCACCCGA
CCCGGATGTGATGGTGGAAAAGGTCCGCATTGAGCTCGATTCATGCGAGA
AGGTACTGAGTGAGGTGATGGAGGGGGGCAAGGCATTGGCGGCTGGTTTT
GGGCAGTACGCGCGGGGGTTGCAAGCCTTTAGTTACTCTATGCATGTCCT
GGCAGAAGGGGAGCGGAGGGTGGAGGTTTTGAACAAAGTCGAGGTAACGG
AGGGTAGGGAGGATAGTAGTAGCGCCGAGCAAGAGAGCAGCAACGACAAC
GCTTCATCTCCACTGAGGGCGCTCTACACCATACCCCTCCCCGAGCTCGC
CTCCCACACCGCTGATCTCTACGCAAACATCGTCCCTACTTTCCTGGCCG
CCCCGGGACAAGCCTCCTTCTTTTTCTCCCCCCTCATCGAGTACGAGCAA
AGCCGCATCCAATCCCTCAAAACTCTCCTCGCAGGTCGCAACGACTTACG
CACCTCCATCCTCAAGCTCCAAAAAAAGGTCGAAGGTCTCCGCCAGCCCT
CCGCCTCCTCTGCCGATCGCGAACTCTACGAAAGCCGCCTTGCTCAAGCA
GAAGTCCACCTCTACAAATTCACCAAAGCCCTCCTCTGTTACACCCTCCC
TGCAGTCGCGCAACAACGCACCTGGAACCTCAACCGAGCTTTGGCCAACC
TCGCAGCGATTTCGACACCAGCAGCCTCAGCATCGTTTGGTCAAACCATG
GGTTATTTGAAAGTGTTAGGATGGGATGCAGCGGAGGTCGTGGAGGAAGC
CAATGAGAACGGGGTAGCCTTAATGGTGCCACATATACCGGTCATAGCCT
TGCCTCAAGCAGGAGAGGAGAAGAATATGCAGCGGGAGGAGCGGCAGAAG
GAAACGACAGTGCTGAAACAAAAAAGTCCTGCCGCAACAGCATCGGCGGC
GGTGGTGGCGGCGCGCAAACCAGGTAGTTTTTTGTACGACAAGCCCTTAC
CTTCTCCTGTAGCGGTGGAGAGTGCAGGTGGAGAGGAGGAGAGAAAGAGA
GGTAGCGGTCTAAGCACCAGCGACAGCGGCGGAGATGGTAATAGCATTAC
TACTACCTGGCCGATGACGGACCCTATCGTGACAGTGGCTTCCTCATTGG
GATCAGGCGACCGCAAGGGAGCCAGTGGGAAAGCTCCCTGGGAAAGCGAC
GACGAGGTGGAGAACCCGTTTGAGAAGGAGGAGGGGGTGTAAGCCAGTAC
GTCCAGGTTTTGAGTTTTTTTTTCAGAAGCTAGATAAACATAAAATTTCT
CCATGATTTGTACAGTCAAGTCGCCGTACGAAGCGCAAGCAGAAAGAGAG
CGAGAAATGAAGCCCGACAGAGAAAAAGTAATGGAGTGTGGTTGAGGGAG
TGTCTGAATATGCGTGTGTGATATAGGGCACGGCGTCAGAAAGAAAGGCG
ATGGGTTTAAGAAGCGGATGGATTGAGTACCTGATGCAGGTGCATGATCG
TCTTCCAGTTATGCATGTATTAGAAAAAAATTAAGTGAAATGCAAATGTA
TGATAGGGGACACACACACAAGGAAGTCGTTATGTCTTTTTTCACCAGAG
AATTGTGTGGTTTCTCTCATGGTACGTACGGATTACTTAGTGAACAGGAA
ACAGGACAAGAAGCAAGAAGAGGTTTAAAATTCAAGATTGAATTCAGGAG
GGAAAGATGCAGGAGAAAAGCTGCATGGTAAAGAGAGTGTATATTCTATG
GCTGTGTGTCAGGGTCGTGCGTAAGCGAGTGTTTACTTCTATCCACTCGC
ACACACTGATAATTTACAGCATTTGGTGCGACAAACTAATAGCGGACAAG
ATGTGACGATAACAAATCCTCACATTTCATTTATATAGCACGGAATGAAC
AAGAGAGACTACAACACTCAAACGAAATAGTCTTGCGTCTTCA

Coding sequence (CDS) from alignment at chr5:1122375..1125167-

>NO05G04360.1 ID=NO05G04360.1|Name=NO05G04360.1|organism=Nannochloropsis oceanica|type=CDS|length=1794bp|location=Sequence derived from alignment at chr5:1122375..1125167- (Nannochloropsis oceanica)
ATGAGTAGCTTCGTCCAAGAGTACGAGCAACATCGACCCTGCATCGTCGT
GGAACTCCCCGAGCTGCGCAAAACAAGCGGGGGCCTCTTCTCCGCTCGTG
AGGTGATGACTTACGCCGTTTGTGTCCAGGGTGGCAATTCCTTCGAGAGC
CCGCGGCCCTTTCCCAAGCACGGGGTCCGACATCGCTATTCGGATTTTGA
GGCACTTTCACGGGGACTGCAACGACGCTTTGGCACGGAGGGGATGTTAA
TCCCACCGTTGCCCCCAAAGGGCCTGCGGAAAAAGCACGATGTCGACTTT
ATTAAGCAGCGAATGAATGGCTTGCAGTTTTTCATGGAAGGCATCGCTGC
TTCTCCCTTCTTATTCCATGACATACTCACGCAAAAATTTCTGAAGCGCA
CCACCACCGAAGGTGCGGGCTCGATTGTGGCAATCCTGGATGAAGGAGAC
AACTCTGTCGGACAAATTATTCCCTTGCCCTCCTCCTCCTCTTCTTCAAA
GCCGCCGTCCTCCCCCCTCTCTTCCGCCTCTATGGCTGCCATGCATAATC
AGGGCTACATACAATGGACTGAATTTCTGTCCTCTTTCGTTCTGCCACCC
GACCCGGATGTGATGGTGGAAAAGGTCCGCATTGAGCTCGATTCATGCGA
GAAGGTACTGAGTGAGGTGATGGAGGGGGGCAAGGCATTGGCGGCTGGTT
TTGGGCAGTACGCGCGGGGGTTGCAAGCCTTTAGTTACTCTATGCATGTC
CTGGCAGAAGGGGAGCGGAGGGTGGAGGTTTTGAACAAAGTCGAGGTAAC
GGAGGGTAGGGAGGATAGTAGTAGCGCCGAGCAAGAGAGCAGCAACGACA
ACGCTTCATCTCCACTGAGGGCGCTCTACACCATACCCCTCCCCGAGCTC
GCCTCCCACACCGCTGATCTCTACGCAAACATCGTCCCTACTTTCCTGGC
CGCCCCGGGACAAGCCTCCTTCTTTTTCTCCCCCCTCATCGAGTACGAGC
AAAGCCGCATCCAATCCCTCAAAACTCTCCTCGCAGGTCGCAACGACTTA
CGCACCTCCATCCTCAAGCTCCAAAAAAAGGTCGAAGGTCTCCGCCAGCC
CTCCGCCTCCTCTGCCGATCGCGAACTCTACGAAAGCCGCCTTGCTCAAG
CAGAAGTCCACCTCTACAAATTCACCAAAGCCCTCCTCTGTTACACCCTC
CCTGCAGTCGCGCAACAACGCACCTGGAACCTCAACCGAGCTTTGGCCAA
CCTCGCAGCGATTTCGACACCAGCAGCCTCAGCATCGTTTGGTCAAACCA
TGGGTTATTTGAAAGTGTTAGGATGGGATGCAGCGGAGGTCGTGGAGGAA
GCCAATGAGAACGGGGTAGCCTTAATGGTGCCACATATACCGGTCATAGC
CTTGCCTCAAGCAGGAGAGGAGAAGAATATGCAGCGGGAGGAGCGGCAGA
AGGAAACGACAGTGCTGAAACAAAAAAGTCCTGCCGCAACAGCATCGGCG
GCGGTGGTGGCGGCGCGCAAACCAGGTAGTTTTTTGTACGACAAGCCCTT
ACCTTCTCCTGTAGCGGTGGAGAGTGCAGGTGGAGAGGAGGAGAGAAAGA
GAGGTAGCGGTCTAAGCACCAGCGACAGCGGCGGAGATGGTAATAGCATT
ACTACTACCTGGCCGATGACGGACCCTATCGTGACAGTGGCTTCCTCATT
GGGATCAGGCGACCGCAAGGGAGCCAGTGGGAAAGCTCCCTGGGAAAGCG
ACGACGAGGTGGAGAACCCGTTTGAGAAGGAGGAGGGGGTGTAA

Synonyms

Publications