NO05G03660.1, NO05G03660.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G03660.1
Unique NameNO05G03660.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1714
Alignment locationchr5:961270..963327 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:961270..963327 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G03660.1 vs.
Match: EWM28015.1 (hypothetical protein Naga_100008g8 [Nannochloropsis gaditana])

HSP 1 Score: 404.4 bits (1038), Expect = 2.900e-109
Identity = 194/277 (70.04%), Postives = 225/277 (81.23%), Query Frame = 0 
Query:   11 SISAAKDIADAAASGDKASATASAAAPKKSSALEQERKKSSRKRAPVDYNEERVVVTGEEAVAEQSKNKKPKGGAPQIFSGMQPLPTRDAAGKLHFADHPDFTPNMTPKEVLRAGSFGGGYFRPIHCTVNEQDFKDAHKEFPKDWFEGLDVGRMITSKTYRADINTFGVKCGGSLEMWQSSGWITAIDPYGAFQWYCRFYLGRRSEDDARQISRFNQVMGPTGRFRTNLMNQIIRKNTRWDDVNVSPVIRQTLQHWGYRLTEADFKAHCKKKGYKVP 288
            S S++K  A+A A     S      A + + +  + ++KSSRKR PVDYNEE VVV  E   +E +KNKKP+   P++FS  Q  P+RD+ G LHF DHP+F PN+TPKEVLRAGSFGGGYFRPIH +V  +D+ DAHKEFP DWFEGLD+ RMITSKTYR DINT+GVKCGGSLEMW+SSGWIT +DPYGAFQWYCRF+LGRRSEDDARQI RFNQVMGPTGRFRTNLMNQI+RK  R+DDVNVSPVIRQTLQHWGYRLTEADFKA+CKKKG++ P
Sbjct:  103 SSSSSKKGAEAVAK----SIQDPKPAKESTDSSSKNQRKSSRKRDPVDYNEEHVVVQEEAGASETTKNKKPRRDTPKVFSERQQEPSRDSKGVLHFKDHPEFLPNLTPKEVLRAGSFGGGYFRPIHSSVTGEDYSDAHKEFPSDWFEGLDMKRMITSKTYRPDINTYGVKCGGSLEMWESSGWITPVDPYGAFQWYCRFFLGRRSEDDARQIGRFNQVMGPTGRFRTNLMNQIVRKGKRFDDVNVSPVIRQTLQHWGYRLTEADFKAYCKKKGFECP 375
The following BLAST results are available for this feature:
BLAST of NO05G03660.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28015.12.900e-10970.04hypothetical protein Naga_100008g8 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G03660NO05G03660Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G03660.1NO05G03660.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G03660.1.cds1NO05G03660.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G03660.1.cds2NO05G03660.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G03660.1.cds3NO05G03660.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G03660.1 ID=NO05G03660.1|Name=NO05G03660.1|organism=Nannochloropsis oceanica|type=mRNA|length=1714bp
TAGATCGGTGTCTTGTTGGGATTCCGTCCTGGGGCGTACGATTTTGGTGT
ATGTATGCGTGAAAGGTGGCGCCTGCGTCCCCAATAACCAGTGTCTGGGT
CCAACAGGCAATGCTAGCCTTGTCTAGGATGACAACGCTCTCGCACAGGG
TGAATTAAATGTGCGCTTGGCTTTCCTTCAAGTGTATTGCGTTGGGGGCA
GAGACGGCTGGTCAATGAAATTACCCATGGTGTGTATGTTCAATTAATAC
AAAGCAGGGTCACCCATCCTCGCTGTTGCACGCAACACAATGAGCCCGAA
CACACAACAAAACAAACCACCCAGGCTAATTACACGGTATCTATACATCC
ACCACAGGTACTATCATATTTTCCACAATTTTCTGTCGCCTTTCTCACAC
TGGGACGCCCCGTGAGCTTTGCCGCCCTTCTCCTCCTCGTCGGTCGTCCG
TTGAGGCATACGTCAGAACTTCCAGCACATACTGCATTCGTCCCCACGCC
TGCGCCTTCCTCCATGTCATCCCCGGCCAAATTGCTAAAGAAGAGCATTT
CTGCCGCCAAAGACATAGCCGATGCGGCCGCCTCGGGAGACAAAGCGTCT
GCCACTGCCTCCGCCGCGGCCCCAAAGAAATCATCTGCGTTGGAGCAGGA
ACGAAAGAAGTCCTCCCGCAAGCGCGCCCCAGTTGATTATAACGAGGAGC
GTGTCGTTGTCACGGGAGAAGAGGCCGTCGCCGAGCAAAGCAAGAATAAA
AAGCCTAAGGGCGGCGCCCCCCAAATTTTTTCTGGTATGCAGCCTCTGCC
CACGCGAGACGCCGCTGGCAAGTTGCACTTTGCTGATCACCCAGACTTTA
CCCCGAATATGACGCCCAAGGAGGTGTTGCGCGCAGGAAGCTTTGGTGGG
GGATATTTTCGTCCTATTCACTGCACGGTAAATGAACAGGATTTCAAGGA
TGCGCACAAAGAATTTCCCAAGGATTGGTTCGAGGGTTTGGACGTCGGGC
GGATGATTACCTCCAAGACGTATCGCGCGGACATCAATACGTTCGGGGTA
AAGTGTGGGGGAAGCTTGGAGATGTGGCAGTCGAGTGGATGGATTACGGC
AATTGATCCCTATGGCGCGTTTCAATGGTATTGCCGTTTCTATCTAGGCC
GGCGGTCGGAAGACGACGCCCGTCAGATCTCGCGTTTCAACCAGGTGATG
GGTCCCACGGGTCGCTTTCGCACTAATTTGATGAACCAAATCATCCGCAA
AAATACGCGATGGGACGATGTGAATGTGTCACCGGTCATTCGACAGACGT
TACAGCATTGGGGGTATCGATTGACAGAGGCAGACTTCAAGGCTCACTGC
AAGAAGAAGGGCTACAAGGTTCCGGGGTAAACCGTTAACAGGAGGAGCGG
AAATGAAGCGTTGACAAGTTAGCGTCAGCGGGACTGAGGCGTTGAATCGG
GCCGAAGCGACCGGGGAGTTGGAGAGAGGCGAAAGAAGAGAGTTACCGAG
ACAAGTCCATTTATCCGAACCTCACGAAAGCTTGGCTGCAATCATTCAAG
CGGACAGAGACAAGGGAGAAAGAGAGAGAGAGAACGAATGGAAGTAGAAA
GAAGCACAAGCACACAGTCATTTCTTTCCCCCAAACACATGACGAAAAAA
GGGGTCCGGCATAAAGAAGATATCACACCAGCCGGAAGGCCTACCGTACG
CATTTAGGAACAAG
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protein sequence of NO05G03660.1

>NO05G03660.1-protein ID=NO05G03660.1-protein|Name=NO05G03660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=289bp
MSSPAKLLKKSISAAKDIADAAASGDKASATASAAAPKKSSALEQERKKS
SRKRAPVDYNEERVVVTGEEAVAEQSKNKKPKGGAPQIFSGMQPLPTRDA
AGKLHFADHPDFTPNMTPKEVLRAGSFGGGYFRPIHCTVNEQDFKDAHKE
FPKDWFEGLDVGRMITSKTYRADINTFGVKCGGSLEMWQSSGWITAIDPY
GAFQWYCRFYLGRRSEDDARQISRFNQVMGPTGRFRTNLMNQIIRKNTRW
DDVNVSPVIRQTLQHWGYRLTEADFKAHCKKKGYKVPG*
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mRNA from alignment at chr5:961270..963327-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G03660.1 ID=NO05G03660.1|Name=NO05G03660.1|organism=Nannochloropsis oceanica|type=mRNA|length=2058bp|location=Sequence derived from alignment at chr5:961270..963327- (Nannochloropsis oceanica)
TAGATCGGTGTCTTGTTGGGATTCCGTCCTGGGGCGTACGATTTTGGTGT
ATGTATGCGTGAAAGGTGGCGCCTGCGTCCCCAATAACCAGTGTCTGGGT
CCAACAGGCAATGCTAGCCTTGTCTAGGATGACAACGCTCTCGCACAGGG
TGAATTAAATGTGCGCTTGGCTTTCCTTCAAGTGTATTGCGTTGGGGGCA
GAGACGGCTGGTCAATGAAATTACCCATGGTGTGTATGTTCAATTAATAC
AAAGCAGGGTCACCCATCCTCGCTGTTGCACGCAACACAATGAGCCCGAA
CACACAACAAAACAAACCACCCAGGCTAATTACACGGTATCTATACATCC
ACCACAGGTACTATCATATTTTCCACAATTTTCTGTCGCCTTTCTCACAC
TGGGACGCCCCGTGAGCTTTGCCGCCCTTCTCCTCCTCGTCGGTCGTCCG
TTGAGGCATACGTCAGAACTTCCAGCACATACTGCATTCGTCCCCACGCC
TGCGCCTTCCTCCATGTCATCCCCGGCCAAATTGCTAAAGAAGAGCATTT
CTGCCGCCAAAGACATAGCCGATGCGGCCGCCTCGGGAGACAAAGCGTCT
GCCACTGCCTCCGCCGCGGCCCCAAAGAAATCATCTGCGTTGGAGCAGGA
ACGAAAGAAGTCCTCCCGCAAGCGCGCCCCAGTTGATTATAACGAGGAGC
GTGTCGTTGTCACGGGAGAAGAGGCCGTCGCCGAGCAAAGCAAGAATAAA
AAGCCTAAGGGCGGCGCCCCCCAAATTTTTTCTGGTATGCAGCCTCTGCC
CACGCGAGACGCCGCTGGCAAGTTGCACTTTGCTGATCACCCAGACTTTA
CCCCGAATATGACGCCCAAGGAGGTGTTGCGCGCAGGAAGCTTTGGTGGG
GGATATTTTCGTCCTATTCACTGCACGGTAAATGAACAGGATTTCAAGGA
TGCGCACAAAGAATTTCCCAAGGATTGGTTCGAGGGTTTGGACGTCGGGC
GGATGATTACCTCCAAGACGTATCGCGCGGACATCAATACGTTCGGGGTA
AAGTGTGGGGGAAGCTTGGAGATGTGGCAGTCGAGTGGATGGATTACGGC
AATTGATCCCTATGGCGCGTTTCAATGGTGAGTGAGGGTGGGTAGGTGTT
AAGGAGGGAGAGAGGGAGAGATGGAGGGAAGGGTGAAATATGCCCTTGCG
TGGTTGTGAGAATTCATGTCCTGCTGAATGACTCACTCCCTTTCTTCTCT
TCCTGGCCACCAAAAAGGTATTGCCGTTTCTATCTAGGCCGGCGGTCGGA
AGACGACGCCCGTCAGATCTCGCGTTTCAACCAGGTGATGGGTCCCACGG
GTCGCTTTCGCACTAATTTGATGAACCAAATCATCCGCAAAAATACGCGA
TGGGACGATGTGAATGTGTCACCGGTCATTCGACAGACGTTACAGCATTG
GGGGTATCGATTGACAGAGGTAGGACACGCATCAACACAGCTCCCTCTTC
CCTTCTTTCCAGTCGCCGTACAAAGGGCAGCTTACTACACACCTCCGCAA
CCCTTGAAGATTACCATGTCAAATCCGCATTGCTGTATAAACTCACTTAT
CTCTGCATGCTCTGGTGTGTGTATGCGTCTCTTTTCTCCTCCTCCTGTCC
TCTACTCTTCCTCGTTGCCACAGGCAGACTTCAAGGCTCACTGCAAGAAG
AAGGGCTACAAGGTTCCGGGGTAAACCGTTAACAGGAGGAGCGGAAATGA
AGCGTTGACAAGTTAGCGTCAGCGGGACTGAGGCGTTGAATCGGGCCGAA
GCGACCGGGGAGTTGGAGAGAGGCGAAAGAAGAGAGTTACCGAGACAAGT
CCATTTATCCGAACCTCACGAAAGCTTGGCTGCAATCATTCAAGCGGACA
GAGACAAGGGAGAAAGAGAGAGAGAGAACGAATGGAAGTAGAAAGAAGCA
CAAGCACACAGTCATTTCTTTCCCCCAAACACATGACGAAAAAAGGGGTC
CGGCATAAAGAAGATATCACACCAGCCGGAAGGCCTACCGTACGCATTTA
GGAACAAG
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Coding sequence (CDS) from alignment at chr5:961270..963327-

>NO05G03660.1 ID=NO05G03660.1|Name=NO05G03660.1|organism=Nannochloropsis oceanica|type=CDS|length=867bp|location=Sequence derived from alignment at chr5:961270..963327- (Nannochloropsis oceanica)
ATGTCATCCCCGGCCAAATTGCTAAAGAAGAGCATTTCTGCCGCCAAAGA
CATAGCCGATGCGGCCGCCTCGGGAGACAAAGCGTCTGCCACTGCCTCCG
CCGCGGCCCCAAAGAAATCATCTGCGTTGGAGCAGGAACGAAAGAAGTCC
TCCCGCAAGCGCGCCCCAGTTGATTATAACGAGGAGCGTGTCGTTGTCAC
GGGAGAAGAGGCCGTCGCCGAGCAAAGCAAGAATAAAAAGCCTAAGGGCG
GCGCCCCCCAAATTTTTTCTGGTATGCAGCCTCTGCCCACGCGAGACGCC
GCTGGCAAGTTGCACTTTGCTGATCACCCAGACTTTACCCCGAATATGAC
GCCCAAGGAGGTGTTGCGCGCAGGAAGCTTTGGTGGGGGATATTTTCGTC
CTATTCACTGCACGGTAAATGAACAGGATTTCAAGGATGCGCACAAAGAA
TTTCCCAAGGATTGGTTCGAGGGTTTGGACGTCGGGCGGATGATTACCTC
CAAGACGTATCGCGCGGACATCAATACGTTCGGGGTAAAGTGTGGGGGAA
GCTTGGAGATGTGGCAGTCGAGTGGATGGATTACGGCAATTGATCCCTAT
GGCGCGTTTCAATGGTATTGCCGTTTCTATCTAGGCCGGCGGTCGGAAGA
CGACGCCCGTCAGATCTCGCGTTTCAACCAGGTGATGGGTCCCACGGGTC
GCTTTCGCACTAATTTGATGAACCAAATCATCCGCAAAAATACGCGATGG
GACGATGTGAATGTGTCACCGGTCATTCGACAGACGTTACAGCATTGGGG
GTATCGATTGACAGAGGCAGACTTCAAGGCTCACTGCAAGAAGAAGGGCT
ACAAGGTTCCGGGGTAA
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Synonyms
Publications