NO05G02560.1, NO05G02560.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G02560.1
Unique NameNO05G02560.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2067
Alignment locationchr5:674693..677112 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:674693..677112 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G02560.1 vs.
Match: EWM28104.1 (threonine dehydratase [Nannochloropsis gaditana])

HSP 1 Score: 982.6 bits (2539), Expect = 4.900e-283
Identity = 493/555 (88.83%), Postives = 527/555 (94.95%), Query Frame = 0 
Query:    1 MLGGGRWRRMTRLPASLLMQRAAASSSGASVAITGSSATEDFNSDHTDYLARILNARVYEIAIETPLQPAPCMSKAIHNNVLLKREDLQPVFSFKLRGAYNKIVSTPAADLERGVVACSAGNHAQGVALSASRKNIKAVIVMPLATPQIKVNAVRRFGGPTVTVKLHGKNYDEASEEALRLAREEGLTMIHPFDDPDVIAGQGTIGMEILKATNGQPLDAIFVCVGGGGLLSGIASYVKAVRPSVKVIGVEAEDAAGMTTSLEAGHVITLDRVGLFADGAAVRVVGKETFRVCSQLVDEMVTVTTDEICAAIKAGFQDTRSVLEPAGALAIAGAKKYCAAEQWRDKTIVAIASGANMDFDRLRFVSERSDSTESLLSVRISERPGSFRQLYTGIFPRNVTEFSYRFNSPDTADVIISFQSMPNMNREEDKQQVLENIRHLEFEVVDLSANEMAKAHARYLAGGRAPHVKNEQLYRFEFPERPGALHAFLTDLSKGWNVSLFHYRNQGGDIGRVLVGLQVPPEEFAEFQKWLETLSHLGYVYFAETKNPVYFQFLY 556
            ML GG WRR+ +LPA++L+QRAAASSSGASV  + +S T++F  DHTDYLARILNARVYE+AIETPLQPAPCMSK IHNNVL KREDLQPVFSFKLRGAYNKIVSTPAADLERGVVACSAGNHAQGVALSASRKNIKAVIVMPLATPQIKVNAV+RFGGPTV VKLHGKNYDEASEEA RL+REEGLTMIHPFDDPDVIAGQGTIGMEILKATNGQPLDAIFVCVGGGGLLSG+A+YVKAVRPSVKVIGVEAEDAAGMTTSL+AGHV+ LDRVGLFADGAAVRVVG+ETFR+CS LVDEMVTVTTDEICAAIKAGFQDTRSV+EPAGALAIAGA+KYCAA+QWR KT+VAIASGANMDFDRLRFVSERSDSTE+LLSVRI+ERPGSFRQLY+GIFPRNVTEFSYRFNSPDTADVIISFQ M   +REEDKQQVLENIR+L+FEVVDLS NEMAKAHARYLAGGRAPHVK+EQLYRFEFPERPGALHAFLTDL+KGWNVSLFHYRNQGGDIGRVLVGLQVPP+E  +F  WL TL  LGYV++AETKNPVYFQFLY
Sbjct:    1 MLPGGGWRRVAQLPATMLLQRAAASSSGASVVSSANSMTDEF-PDHTDYLARILNARVYELAIETPLQPAPCMSKTIHNNVLFKREDLQPVFSFKLRGAYNKIVSTPAADLERGVVACSAGNHAQGVALSASRKNIKAVIVMPLATPQIKVNAVKRFGGPTVVVKLHGKNYDEASEEAQRLSREEGLTMIHPFDDPDVIAGQGTIGMEILKATNGQPLDAIFVCVGGGGLLSGVAAYVKAVRPSVKVIGVEAEDAAGMTTSLQAGHVVALDRVGLFADGAAVRVVGRETFRLCSHLVDEMVTVTTDEICAAIKAGFQDTRSVMEPAGALAIAGAQKYCAAQQWRGKTVVAIASGANMDFDRLRFVSERSDSTETLLSVRINERPGSFRQLYSGIFPRNVTEFSYRFNSPDTADVIISFQCMAGASREEDKQQVLENIRNLDFEVVDLSGNEMAKAHARYLAGGRAPHVKHEQLYRFEFPERPGALHAFLTDLNKGWNVSLFHYRNQGGDIGRVLVGLQVPPKEVGQFHDWLTTLPQLGYVWYAETKNPVYFQFLY 554
The following BLAST results are available for this feature:
BLAST of NO05G02560.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28104.14.900e-28388.83threonine dehydratase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G02560NO05G02560Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G02560.1NO05G02560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G02560.1.cds1NO05G02560.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G02560.1.cds2NO05G02560.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G02560.1.cds3NO05G02560.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G02560.1 ID=NO05G02560.1|Name=NO05G02560.1|organism=Nannochloropsis oceanica|type=mRNA|length=2067bp
GGGCGTATTCTTTTGGTTATCTCAGATTGTCAAGACTCAAGGCCGGGTCA
GCAAAGTCCCGGAAGAGGAAAAAATACTACACGTAAATCAAGAGGCCGCA
TCGTTGCTCACTGAACAAACCAGCTTTGTCGTGTCCAGCCAACTCCAACC
TGTCAGCAGCGGCATCAGCAACATCATCAGTCCTTGCAAGGGGAATGCTG
GGCGGAGGTAGGTGGCGGCGGATGACACGACTACCAGCCTCATTGCTGAT
GCAGCGTGCGGCCGCCAGCAGTAGCGGGGCCTCGGTTGCAATTACGGGAA
GTAGCGCGACGGAGGATTTCAACAGCGACCACACGGACTACTTGGCCCGT
ATCCTTAATGCCCGTGTCTACGAGATTGCCATCGAGACGCCCTTACAACC
AGCGCCCTGCATGTCCAAGGCGATTCATAACAATGTGTTGCTAAAGAGAG
AAGATTTGCAGCCCGTCTTCTCTTTCAAGCTTCGAGGTGCTTATAATAAA
ATCGTCAGCACGCCTGCCGCAGACCTGGAACGGGGCGTCGTGGCCTGCTC
GGCAGGCAACCACGCCCAAGGCGTTGCACTCTCCGCTTCGCGCAAAAATA
TCAAGGCCGTCATTGTCATGCCGTTGGCCACACCCCAGATTAAAGTGAAT
GCGGTCCGACGATTTGGAGGACCTACGGTGACGGTGAAGTTGCACGGAAA
GAACTACGATGAAGCGTCGGAGGAAGCATTGCGGTTGGCAAGGGAGGAGG
GCTTGACGATGATCCATCCTTTTGATGACCCCGACGTTATTGCGGGGCAA
GGCACAATAGGCATGGAGATCTTGAAAGCTACAAACGGGCAGCCATTAGA
TGCCATCTTTGTGTGCGTGGGTGGTGGGGGTTTGCTTTCTGGAATAGCTT
CCTATGTCAAGGCGGTGCGGCCGTCAGTAAAAGTGATTGGGGTCGAGGCG
GAGGACGCTGCGGGCATGACTACCTCTTTGGAGGCGGGTCACGTTATAAC
CTTGGATAGAGTCGGGTTGTTTGCCGACGGGGCAGCAGTACGGGTTGTGG
GGAAGGAAACGTTTCGCGTGTGTAGTCAGTTGGTAGATGAGATGGTGACA
GTGACAACGGACGAGATCTGCGCAGCGATCAAGGCGGGGTTTCAGGACAC
GCGCAGTGTGTTGGAGCCGGCAGGGGCGCTGGCGATAGCTGGGGCAAAGA
AATATTGCGCGGCGGAACAGTGGAGAGACAAGACGATCGTGGCGATTGCC
TCGGGCGCGAACATGGACTTCGACCGGTTGCGGTTTGTGAGTGAACGGTC
GGATTCGACTGAGTCGCTGCTTTCGGTGAGAATAAGTGAGCGGCCCGGGA
GCTTCAGACAATTGTACACGGGAATTTTCCCAAGAAATGTGACAGAGTTT
TCATACCGATTCAATAGTCCGGATACGGCTGATGTGATCATCAGCTTTCA
ATCCATGCCTAACATGAATCGGGAGGAAGATAAGCAGCAGGTGCTGGAAA
ACATTCGTCACCTCGAGTTCGAGGTCGTCGACCTGAGCGCCAACGAAATG
GCCAAGGCTCACGCCCGATACCTCGCTGGCGGGCGGGCCCCACACGTCAA
AAATGAGCAGCTTTATCGATTTGAGTTCCCCGAGCGACCAGGTGCTTTGC
ATGCCTTCTTGACGGACCTGAGCAAGGGTTGGAACGTCAGTCTCTTCCAT
TACCGTAACCAGGGCGGGGACATTGGTCGTGTCCTTGTTGGGCTGCAGGT
TCCCCCTGAGGAATTTGCAGAGTTTCAGAAGTGGTTGGAAACATTGTCGC
ATTTGGGCTACGTCTATTTCGCTGAGACGAAGAATCCTGTTTATTTTCAA
TTTCTGTACTGACCAGAGACGAGGTGAGAAGAGACGGAAGGAGAGGAGAG
GGGGGCTGCGTGATGCATGTGTGGCTGCATTTAGAATTGACTGGACCCTA
ACTGTGTGCCGCATGTTTCTAGGATGTAGGATAAGTTCCTTGCCTTTTTA
AAGAGCACAATAAGATTTCTATTTCAATTAAAAAAGAAAAAAGAAAAAAG
AATGACCTATGCGGGGG
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protein sequence of NO05G02560.1

>NO05G02560.1-protein ID=NO05G02560.1-protein|Name=NO05G02560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=556bp
MLGGGRWRRMTRLPASLLMQRAAASSSGASVAITGSSATEDFNSDHTDYL
ARILNARVYEIAIETPLQPAPCMSKAIHNNVLLKREDLQPVFSFKLRGAY
NKIVSTPAADLERGVVACSAGNHAQGVALSASRKNIKAVIVMPLATPQIK
VNAVRRFGGPTVTVKLHGKNYDEASEEALRLAREEGLTMIHPFDDPDVIA
GQGTIGMEILKATNGQPLDAIFVCVGGGGLLSGIASYVKAVRPSVKVIGV
EAEDAAGMTTSLEAGHVITLDRVGLFADGAAVRVVGKETFRVCSQLVDEM
VTVTTDEICAAIKAGFQDTRSVLEPAGALAIAGAKKYCAAEQWRDKTIVA
IASGANMDFDRLRFVSERSDSTESLLSVRISERPGSFRQLYTGIFPRNVT
EFSYRFNSPDTADVIISFQSMPNMNREEDKQQVLENIRHLEFEVVDLSAN
EMAKAHARYLAGGRAPHVKNEQLYRFEFPERPGALHAFLTDLSKGWNVSL
FHYRNQGGDIGRVLVGLQVPPEEFAEFQKWLETLSHLGYVYFAETKNPVY
FQFLY*
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mRNA from alignment at chr5:674693..677112+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G02560.1 ID=NO05G02560.1|Name=NO05G02560.1|organism=Nannochloropsis oceanica|type=mRNA|length=2420bp|location=Sequence derived from alignment at chr5:674693..677112+ (Nannochloropsis oceanica)
GGGCGTATTCTTTTGGTTATCTCAGATTGTCAAGACTCAAGGCCGGGTCA
GCAAAGTCCCGGGTACGTCCCTCCACTTCCACTCGCCAGCGTGTGCTGAT
TGAAGTGGATATTTCTGGGCAATCAACCCCTCTGTCCACTCGCGTATGCT
CGCTCACGGTCCATCCACCCACCTATACAGAAGAGGAAAAAATACTACAC
GTAAATCAAGAGGCCGCATCGTTGCTCACTGAACAAACCAGCTTTGTCGT
GTCCAGCCAACTCCAACCTGTCAGCAGCGGCATCAGCAACATCATCAGTC
CTTGCAAGGGGAATGCTGGGCGGAGGTAGGTGGCGGCGGATGACACGACT
ACCAGCCTCATTGCTGATGCAGCGTGCGGCCGCCAGCAGTAGCGGGGCCT
CGGTTGCAATTACGGGAAGTAGCGCGACGGAGGATTTCAACAGCGACCAC
ACGGACTACTTGGCCCGTATCCTTAATGCCCGTGTCTACGAGATTGCCAT
CGAGACGCCCTTACAACCAGCGCCCTGCATGTCCAAGGCGATTCATAACA
ATGTGTTGCTAAAGGTATGCGGAATTGATGCGAGATCGTGTCCTCTTAGA
CTTATCTTGATGGCGTATCATCGCGCATAACCTGTCTTTCTCTCTCACAG
CCGCACATCACATAAACTCGCACGCTCTCCCAATCCCTACACAGAGAGAA
GATTTGCAGCCCGTCTTCTCTTTCAAGCTTCGAGGTGCTTATAATAAAAT
CGTCAGCACGCCTGCCGCAGACCTGGAACGGGGCGTCGTGGCCTGCTCGG
CAGGCAACCACGCCCAAGGCGTTGCACTCTCCGCTTCGCGCAAAAATATC
AAGGCCGTCATTGTCATGCCGTTGGCCACACCCCAGATTAAAGTGAATGC
GGTCCGACGATTTGGAGGACCTACGGTGACGGTGAAGTTGCACGGAAAGA
ACTACGATGAAGCGTCGGAGGAAGCATTGCGGTTGGCAAGGGAGGAGGGC
TTGACGATGATCCATCCTTTTGATGACCCCGACGTTATTGCGGGGCAAGG
CACAATAGGCATGGAGATCTTGAAAGCTACAAACGGGCAGCCATTAGATG
CCATCTTTGTGTGCGTGGGTGGTGGGGGTTTGCTTTCTGGAATAGCTTCC
TATGTCAAGGCGGTGCGGCCGTCAGTAAAAGTGATTGGGGTCGAGGCGGA
GGACGCTGCGGGCATGACTACCTCTTTGGAGGCGGGTCACGTTATAACCT
TGGATAGAGTCGGGTTGTTTGCCGACGGGGCAGCAGTACGGGTTGTGGGG
AAGGAAACGTTTCGCGTGTGTAGTCAGTTGGTAGATGAGATGGTGACAGT
GACAACGGACGAGATCTGCGCAGCGATCAAGGCGGGGTTTCAGGACACGC
GCAGTGTGTTGGAGCCGGCAGGGGCGCTGGCGATAGCTGGGGCAAAGAAA
TATTGCGCGGCGGAACAGTGGAGAGACAAGACGATCGTGGCGATTGCCTC
GGGCGCGAACATGGACTTCGACCGGTTGCGGTTTGTGAGTGAACGGTCGG
ATTCGACTGAGTCGCTGCTTTCGGTGAGAATAAGTGAGCGGCCCGGGAGC
TTCAGACAATTGTACACGGGAATTTTCCCAAGAAATGTGACAGAGTTTTC
ATACCGATTCAATAGTCCGGATACGGCTGATGTGATCATCAGCTTTCAAT
CCATGCCTAACATGAATCGGGAGGAAGATAAGCAGCAGGTGCTGGAAAAC
ATTCGTCACCTCGGTACGTCTTTATGTCTGCAGAGTCGTTTGATGTGGTT
TCCGACCTTATATTTGTTGAGTGTACCTCTCCATTCCCTCTCATCTCCAA
CAACCCACGTACACACAGAGTTCGAGGTCGTCGACCTGAGCGCCAACGAA
ATGGCCAAGGCTCACGCCCGATACCTCGCTGGCGGGCGGGCCCCACACGT
CAAAAATGAGCAGCTTTATCGATTTGAGTTCCCCGAGCGACCAGGTGCTT
TGCATGCCTTCTTGACGGACCTGAGCAAGGGTTGGAACGTCAGTCTCTTC
CATTACCGTAACCAGGGCGGGGACATTGGTCGTGTCCTTGTTGGGCTGCA
GGTTCCCCCTGAGGAATTTGCAGAGTTTCAGAAGTGGTTGGAAACATTGT
CGCATTTGGGCTACGTCTATTTCGCTGAGACGAAGAATCCTGTTTATTTT
CAATTTCTGTACTGACCAGAGACGAGGTGAGAAGAGACGGAAGGAGAGGA
GAGGGGGGCTGCGTGATGCATGTGTGGCTGCATTTAGAATTGACTGGACC
CTAACTGTGTGCCGCATGTTTCTAGGATGTAGGATAAGTTCCTTGCCTTT
TTAAAGAGCACAATAAGATTTCTATTTCAATTAAAAAAGAAAAAAGAAAA
AAGAATGACCTATGCGGGGG
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Coding sequence (CDS) from alignment at chr5:674693..677112+

>NO05G02560.1 ID=NO05G02560.1|Name=NO05G02560.1|organism=Nannochloropsis oceanica|type=CDS|length=1668bp|location=Sequence derived from alignment at chr5:674693..677112+ (Nannochloropsis oceanica)
ATGCTGGGCGGAGGTAGGTGGCGGCGGATGACACGACTACCAGCCTCATT
GCTGATGCAGCGTGCGGCCGCCAGCAGTAGCGGGGCCTCGGTTGCAATTA
CGGGAAGTAGCGCGACGGAGGATTTCAACAGCGACCACACGGACTACTTG
GCCCGTATCCTTAATGCCCGTGTCTACGAGATTGCCATCGAGACGCCCTT
ACAACCAGCGCCCTGCATGTCCAAGGCGATTCATAACAATGTGTTGCTAA
AGAGAGAAGATTTGCAGCCCGTCTTCTCTTTCAAGCTTCGAGGTGCTTAT
AATAAAATCGTCAGCACGCCTGCCGCAGACCTGGAACGGGGCGTCGTGGC
CTGCTCGGCAGGCAACCACGCCCAAGGCGTTGCACTCTCCGCTTCGCGCA
AAAATATCAAGGCCGTCATTGTCATGCCGTTGGCCACACCCCAGATTAAA
GTGAATGCGGTCCGACGATTTGGAGGACCTACGGTGACGGTGAAGTTGCA
CGGAAAGAACTACGATGAAGCGTCGGAGGAAGCATTGCGGTTGGCAAGGG
AGGAGGGCTTGACGATGATCCATCCTTTTGATGACCCCGACGTTATTGCG
GGGCAAGGCACAATAGGCATGGAGATCTTGAAAGCTACAAACGGGCAGCC
ATTAGATGCCATCTTTGTGTGCGTGGGTGGTGGGGGTTTGCTTTCTGGAA
TAGCTTCCTATGTCAAGGCGGTGCGGCCGTCAGTAAAAGTGATTGGGGTC
GAGGCGGAGGACGCTGCGGGCATGACTACCTCTTTGGAGGCGGGTCACGT
TATAACCTTGGATAGAGTCGGGTTGTTTGCCGACGGGGCAGCAGTACGGG
TTGTGGGGAAGGAAACGTTTCGCGTGTGTAGTCAGTTGGTAGATGAGATG
GTGACAGTGACAACGGACGAGATCTGCGCAGCGATCAAGGCGGGGTTTCA
GGACACGCGCAGTGTGTTGGAGCCGGCAGGGGCGCTGGCGATAGCTGGGG
CAAAGAAATATTGCGCGGCGGAACAGTGGAGAGACAAGACGATCGTGGCG
ATTGCCTCGGGCGCGAACATGGACTTCGACCGGTTGCGGTTTGTGAGTGA
ACGGTCGGATTCGACTGAGTCGCTGCTTTCGGTGAGAATAAGTGAGCGGC
CCGGGAGCTTCAGACAATTGTACACGGGAATTTTCCCAAGAAATGTGACA
GAGTTTTCATACCGATTCAATAGTCCGGATACGGCTGATGTGATCATCAG
CTTTCAATCCATGCCTAACATGAATCGGGAGGAAGATAAGCAGCAGGTGC
TGGAAAACATTCGTCACCTCGAGTTCGAGGTCGTCGACCTGAGCGCCAAC
GAAATGGCCAAGGCTCACGCCCGATACCTCGCTGGCGGGCGGGCCCCACA
CGTCAAAAATGAGCAGCTTTATCGATTTGAGTTCCCCGAGCGACCAGGTG
CTTTGCATGCCTTCTTGACGGACCTGAGCAAGGGTTGGAACGTCAGTCTC
TTCCATTACCGTAACCAGGGCGGGGACATTGGTCGTGTCCTTGTTGGGCT
GCAGGTTCCCCCTGAGGAATTTGCAGAGTTTCAGAAGTGGTTGGAAACAT
TGTCGCATTTGGGCTACGTCTATTTCGCTGAGACGAAGAATCCTGTTTAT
TTTCAATTTCTGTACTGA
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Synonyms
Publications