NO05G02340.1, NO05G02340.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G02340.1
Unique NameNO05G02340.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1933
Alignment locationchr5:619566..622141 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:619566..622141 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G02340.1 vs.
Match: EWM28240.1 (hypothetical protein Naga_100004g159 [Nannochloropsis gaditana])

HSP 1 Score: 344.0 bits (881), Expect = 6.300e-91
Identity = 211/376 (56.12%), Postives = 257/376 (68.35%), Query Frame = 0 
Query:    1 MSFGTTT-NAFAFGGL------KPAASASPFGASPAVAPSSSLFGGT------SHGGGPFGAGGGLFPQQQQQQQQQQQQQQQQEQPFTGDTNFSALPQYMQMKVWELHKLVKEHREHAETVNKFSTQSYALDQHTKKLKLHILRVRNAHAEISLLSDELRTQVERLRGFIQKLQAAENGALQYSIPRAAGIEHWQQRQDSHTDILREMVGQCEARLQEYGVHIQELYRKVVPSRGTGDEAREGRDEFSRQVTPDQLATLIRLQNDALLKVAAQVAGMHEMVERLRSEWNSRTGQDPFEELDRVNAENEEQKRKMTRMVIRSSQESLTQESLTSFQVGNSASLIPASFVQRASANIAAPSPFTYSIDGPTTAVAGT 364
            MSFG+   NAF+FGG         A + S FGA+P+V   SS  G T      SHG  P GA     P                +Q FTGDT FS+LPQYMQ++VWELHKLV++HRE+A+++NKF+T SY+LD+ TK+LKL ILRV+N+HAEISL++ ELR QVE+LRGF QKLQAAENGALQY  PRAAG+E  +Q Q SH  IL+E+  QCEARLQEY  HIQELY KVV SR  G    +G    SR+ TPDQLATLIRLQNDALLKVAAQVA +HEMVERLRSEWNSRTGQDPF+E+DR+ A+NEE+KRK  R++IRS QE L Q       +G S + I  SF     A  A+ +   +S   P+T+ + T
Sbjct:    1 MSFGSAAPNAFSFGGTTSTPFSSAAGNTSTFGAAPSV---SSALGATPSSIQTSHGASP-GATSSAAPPN--------------DQGFTGDTTFSSLPQYMQLRVWELHKLVRQHREYADSLNKFTTPSYSLDRFTKRLKLDILRVQNSHAEISLVASELRKQVEQLRGFTQKLQAAENGALQYGTPRAAGVETLRQSQQSHASILKEIAIQCEARLQEYDAHIQELYHKVVASRTVG--GSDGFGGLSREFTPDQLATLIRLQNDALLKVAAQVAVVHEMVERLRSEWNSRTGQDPFQEMDRLAAQNEERKRKTNRLMIRSPQEQLRQ------SIGLSQTSIAPSFTSPPLAQPASNTSAGFSSFLPSTSASNT 350
The following BLAST results are available for this feature:
BLAST of NO05G02340.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28240.16.300e-9156.12hypothetical protein Naga_100004g159 [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G02340NO05G02340Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G02340.1NO05G02340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G02340.1.cds1NO05G02340.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G02340.1.cds2NO05G02340.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G02340.1.cds3NO05G02340.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G02340.1.cds4NO05G02340.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G02340.1.cds5NO05G02340.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G02340.1 ID=NO05G02340.1|Name=NO05G02340.1|organism=Nannochloropsis oceanica|type=mRNA|length=1933bp
GTGTGGTGTGGGGTTGTGCCAGCTAGACAGAGGGAAGCAAATGAGTATAC
TGCATGCATGGGGCACCCTGCTACATCCAGCACTCCTCACCACCGCACCA
CTCACTCGTCTTTTAGGACACCAAAAAAGTGTGACGAGGCCTTGATTGCA
ATCCAACATACCAAGAGTCGACACCGTGAAACTGTGGAGTTCCGGGCGTG
TATATACTGCCCTACTTTGCTTGCTACGTGAAAAAGCTTTCAAGGTAAAG
TCACTTACCAACTCCCGCAAGAATAAGGGGACGAATATGCAACATTTTAT
TGTTGGAAGGCTTCCCCTCGTACGCAATTCCTAGAGGACGTCAGGCTGCA
TGCGATAGTTCTAGGATTGTAGAATAGCTACGACAGAAAAGAACTACATC
AAGAAGATCCAATCCCCAGCTCATATCATACTACGACGACGAAACCTGCA
GCTCGGAATTCCGTGTCGCAGGTTCCGTCCAATTCACCATATCATCCATT
TCACCGTGTGAATGCCCTTCTCAAGCCCTACGCAAGCTCACACTCACAAT
GTACTCACAAACGTATAGGATCATCTCTGCGTTGGATTCGATCTTGCTCG
TTGGCACCCGCTTCATCCCCCGCACATTGTATTGACCCATCATCATCGCT
AGCGCATCATCAGCCCTCATTCCATGTCCTTCGGCACAACAACCAATGCC
TTTGCGTTTGGGGGTCTCAAACCAGCGGCTTCCGCTTCTCCATTTGGTGC
CAGTCCGGCTGTAGCGCCGTCGTCTTCGCTCTTTGGAGGCACTAGCCATG
GGGGTGGACCATTTGGGGCAGGCGGCGGGTTATTCCCACAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGAACAGCCTTTTAC
GGGGGACACAAATTTCTCGGCATTACCTCAATACATGCAGATGAAGGTCT
GGGAGTTGCACAAGCTGGTCAAGGAACACAGAGAGCATGCTGAGACCGTC
AACAAATTCAGCACCCAGAGCTACGCGCTGGATCAGCACACGAAGAAACT
GAAGCTGCACATTTTGCGAGTGCGGAATGCGCACGCTGAAATCTCACTGC
TATCTGATGAGTTGCGCACGCAGGTTGAGCGTTTGCGCGGTTTTATCCAG
AAGCTCCAGGCGGCAGAGAACGGAGCTTTGCAGTACTCTATCCCTCGGGC
TGCCGGGATTGAACACTGGCAGCAGCGACAAGATAGCCATACCGACATTT
TGCGAGAAATGGTGGGCCAATGCGAGGCGCGCCTGCAGGAATACGGCGTC
CACATCCAGGAGCTATACCGTAAGGTTGTGCCCAGCCGCGGCACCGGGGA
CGAGGCCCGAGAAGGGCGTGACGAGTTTTCCAGGCAAGTTACGCCGGATC
AGCTGGCGACTCTTATCCGGCTTCAAAACGATGCACTCCTCAAGGTAGCG
GCCCAGGTGGCGGGCATGCACGAGATGGTGGAGCGGCTGAGAAGTGAGTG
GAACTCTCGCACGGGCCAAGACCCCTTCGAGGAATTGGATCGCGTCAATG
CCGAGAATGAGGAGCAGAAGCGCAAGATGACCCGCATGGTGATACGTTCT
TCCCAGGAATCTCTAACACAAGAAAGCTTGACTTCCTTTCAGGTCGGTAA
TTCTGCTTCCTTGATCCCGGCGTCTTTCGTCCAGCGTGCCTCGGCCAACA
TTGCAGCTCCTTCTCCTTTTACTTACTCTATCGATGGGCCAACTACTGCT
GTCGCGGGCACGGATACATTGACAACAAGTCCCCTTGGATACCCCGCGCC
GGATTCTATCGACCGCACAGGACGATCCACGAAGGCCAAATCCCGACGAT
GAGAGACAGCAGATAGAAGTCAGTTACATGCAAAGCCAGTGAGGCATAGC
AAAGAAAGTATGCAGCAGAATCAACATTGGCCA
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protein sequence of NO05G02340.1

>NO05G02340.1-protein ID=NO05G02340.1-protein|Name=NO05G02340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=393bp
MSFGTTTNAFAFGGLKPAASASPFGASPAVAPSSSLFGGTSHGGGPFGAG
GGLFPQQQQQQQQQQQQQQQQEQPFTGDTNFSALPQYMQMKVWELHKLVK
EHREHAETVNKFSTQSYALDQHTKKLKLHILRVRNAHAEISLLSDELRTQ
VERLRGFIQKLQAAENGALQYSIPRAAGIEHWQQRQDSHTDILREMVGQC
EARLQEYGVHIQELYRKVVPSRGTGDEAREGRDEFSRQVTPDQLATLIRL
QNDALLKVAAQVAGMHEMVERLRSEWNSRTGQDPFEELDRVNAENEEQKR
KMTRMVIRSSQESLTQESLTSFQVGNSASLIPASFVQRASANIAAPSPFT
YSIDGPTTAVAGTDTLTTSPLGYPAPDSIDRTGRSTKAKSRR*
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mRNA from alignment at chr5:619566..622141-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G02340.1 ID=NO05G02340.1|Name=NO05G02340.1|organism=Nannochloropsis oceanica|type=mRNA|length=2576bp|location=Sequence derived from alignment at chr5:619566..622141- (Nannochloropsis oceanica)
GTGTGGTGTGGGGTTGTGCCAGCTAGACAGAGGGAAGCAAATGAGTATAC
TGCATGCATGGGGCACCCTGCTACATCCAGCACTCCTCACCACCGCACCA
CTCACTCGTCTTTTAGGACACCAAAAAAGTGTGACGAGGCCTTGATTGCA
ATCCAACATACCAAGAGTCGACACCGTGAAACTGTGGAGTTCCGGGCGTG
TATATACTGCCCTACTTTGCTTGCTACGTGAAAAAGCTTTCAAGGTAAAG
TCACTTACCAACTCCCGCAAGAATAAGGGGACGAATATGCAACATTTTAT
TGTTGGAAGGCTTCCCCTCGTACGCAATTCCTAGAGGACGTCAGGCTGCA
TGCGATAGTTCTAGGATTGTAGAATAGCTACGACAGAAAAGAACTACATC
AAGAAGATCCAATCCCCAGCTCATATCATACTACGACGACGAAACCTGCA
GCTCGGAATTCCGTGTCGCAGGTTCCGTCCAATTCACCATATCATCCATT
TCACCGTGTGAATGCCCTTCTCAAGCCCTACGCAAGCTCACACTCACAAT
GTACTCACAAACGTATAGGATCATCTCTGCGTTGGATTCGATCTTGCTCG
TTGGCACCCGCTTCATCCCCCGCACATTGTATTGACCCATCATCATCGCT
AGCGCATCATCAGCCCTCATTCCATGTCCTTCGGCACAACAACCAATGCC
TTTGCGTTTGGGGGTCTCAAACCAGCGGCTTCCGCTTCTCCATTTGGTGC
CAGTCCGGCTGTAGCGCCGTCGTCTTCGCTCTTTGGAGGCACTAGCCATG
GGGGTGGACCATTTGGGGCAGGCGGCGGGTTATTCCCACAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGAACAGCCTTTTAC
GGGGGACACAAATTTCTCGGCATTACCTCAATACATGCAGATGAAGGTCT
GGGAGTTGCACAAGCTGGTCAAGGAACACAGAGAGCATGCTGAGACCGTC
AACAAATTCAGCACCCAGAGCTACGCGCTGGATCAGCACACGAAGGTAAG
GTGAAGGAAGAGAAGTGCGTGAAAGAGCAGCTCACAAGAGGGGGGACGAA
GAGAGGAGAATAGAATGGCTTGGTGTACTGCTGAAAGCTTTCGGCCGGTC
GCGTTCAAAGTAAGGCATATTTTTGCATGTTCATATTGTAGGTTATGGAC
AGCTGTTTGTCTTCCTAAGTTTGTCTTTTAGATTGGTCTGTTCAAAGGAA
GACGTCTCAATTAAATTTTTCATCGCTAATTACTTTTTTTTTTCTCGTAT
TGTCATGGCTGCTCTCTTCCAATGCCCTCTCTCCCCCTTCCCACACACCC
CTCTCTTGACAGAAACTGAAGCTGCACATTTTGCGAGTGCGGAATGCGCA
CGCTGAAATCTCACTGCTATCTGATGAGTTGCGCACGCAGGTTGAGCGTT
TGCGCGGTTTTATCCAGAAGCTCCAGGCGGCAGAGAACGGAGCTTTGCAG
TACTCTATCCCTCGGGCTGCCGGGATTGAACACTGGCAGCAGCGACAAGA
TAGCCATACCGACATTTTGCGAGAAATGGTGGGCCAATGCGAGGCGCGCC
TGCAGGAATACGGCGTCCACATCCAGGAGCTATACCGTAAGGTTGTGCCC
AGCCGCGGCACCGGGGACGAGGCCCGAGAAGGGCGTGACGAGTTTTCCAG
GTAAAGGATAGACGGAATGAAAGCGGTGGGGCTGGTGATAATAGGCCTCC
CGAAATGGTGGTGCGACCTCACGAGGAAACGCGGCATTTTTTGGTCACCT
TCTCACACACGGACCCGCTTTTTATTTTCTGGTGCGGCCAACAGGCAAGT
TACGCCGGATCAGCTGGCGACTCTTATCCGGCTTCAAAACGATGCACTCC
TCAAGGTAGCGGCCCAGGTGGCGGGCATGCACGAGATGGTGGAGCGGCTG
AGAAGTGAGTGGAACTCTCGCACGGGCCAAGACCCCTTCGAGGTAAGAGC
TGCACATGTCTAGTTAGAGGTCAGAAAGAAGGGAACGTGAAACCCCGATT
ACCTTCCCCACATCACCTTGACCTATACTTACCGTCAGGAATTGGATCGC
GTCAATGCCGAGAATGAGGAGCAGAAGCGCAAGATGACCCGCATGGTGAT
ACGTTCTTCCCAGGAATCTCTAACACAAGAAAGCTTGACTTCCTTTCAGG
TCGGTAATTCTGCTTCCTTGATCCCGGCGTCTTTCGTCCAGCGTGCCTCG
GCCAACATTGCAGCTCCTTCTCCTTTTACTTACTCTATCGATGGGCCAAC
TACGTAAGTGCTCATTAATTTGGCCTTATCACAGTCTTTCTTTGATCGCT
CACTCTCTCTCGCTGGACATTTGTAAATTATCATCGCAGTGCTGTCGCGG
GCACGGATACATTGACAACAAGTCCCCTTGGATACCCCGCGCCGGATTCT
ATCGACCGCACAGGACGATCCACGAAGGCCAAATCCCGACGATGAGAGAC
AGCAGATAGAAGTCAGTTACATGCAAAGCCAGTGAGGCATAGCAAAGAAA
GTATGCAGCAGAATCAACATTGGCCA
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Coding sequence (CDS) from alignment at chr5:619566..622141-

>NO05G02340.1 ID=NO05G02340.1|Name=NO05G02340.1|organism=Nannochloropsis oceanica|type=CDS|length=1179bp|location=Sequence derived from alignment at chr5:619566..622141- (Nannochloropsis oceanica)
ATGTCCTTCGGCACAACAACCAATGCCTTTGCGTTTGGGGGTCTCAAACC
AGCGGCTTCCGCTTCTCCATTTGGTGCCAGTCCGGCTGTAGCGCCGTCGT
CTTCGCTCTTTGGAGGCACTAGCCATGGGGGTGGACCATTTGGGGCAGGC
GGCGGGTTATTCCCACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGGAACAGCCTTTTACGGGGGACACAAATTTCTCGGCAT
TACCTCAATACATGCAGATGAAGGTCTGGGAGTTGCACAAGCTGGTCAAG
GAACACAGAGAGCATGCTGAGACCGTCAACAAATTCAGCACCCAGAGCTA
CGCGCTGGATCAGCACACGAAGAAACTGAAGCTGCACATTTTGCGAGTGC
GGAATGCGCACGCTGAAATCTCACTGCTATCTGATGAGTTGCGCACGCAG
GTTGAGCGTTTGCGCGGTTTTATCCAGAAGCTCCAGGCGGCAGAGAACGG
AGCTTTGCAGTACTCTATCCCTCGGGCTGCCGGGATTGAACACTGGCAGC
AGCGACAAGATAGCCATACCGACATTTTGCGAGAAATGGTGGGCCAATGC
GAGGCGCGCCTGCAGGAATACGGCGTCCACATCCAGGAGCTATACCGTAA
GGTTGTGCCCAGCCGCGGCACCGGGGACGAGGCCCGAGAAGGGCGTGACG
AGTTTTCCAGGCAAGTTACGCCGGATCAGCTGGCGACTCTTATCCGGCTT
CAAAACGATGCACTCCTCAAGGTAGCGGCCCAGGTGGCGGGCATGCACGA
GATGGTGGAGCGGCTGAGAAGTGAGTGGAACTCTCGCACGGGCCAAGACC
CCTTCGAGGAATTGGATCGCGTCAATGCCGAGAATGAGGAGCAGAAGCGC
AAGATGACCCGCATGGTGATACGTTCTTCCCAGGAATCTCTAACACAAGA
AAGCTTGACTTCCTTTCAGGTCGGTAATTCTGCTTCCTTGATCCCGGCGT
CTTTCGTCCAGCGTGCCTCGGCCAACATTGCAGCTCCTTCTCCTTTTACT
TACTCTATCGATGGGCCAACTACTGCTGTCGCGGGCACGGATACATTGAC
AACAAGTCCCCTTGGATACCCCGCGCCGGATTCTATCGACCGCACAGGAC
GATCCACGAAGGCCAAATCCCGACGATGA
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Synonyms
Publications