NO05G01990.1, NO05G01990.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G01990.1
Unique NameNO05G01990.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1541
Alignment locationchr5:541229..543252 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:541229..543252 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G01990.1 vs.
Match: EWM28182.1 (hypothetical protein Naga_100004g124 [Nannochloropsis gaditana])

HSP 1 Score: 97.8 bits (242), Expect = 3.300e-17
Identity = 55/95 (57.89%), Postives = 71/95 (74.74%), Query Frame = 0 
Query:   55 MAGIGERVNEAMESAKEKISEAGQAIREGASQASGRAKEGAQHTGHRIQEAGQSAKHSGMETGLKASDTAQETYDRTKHKAQEGMSSSGSSGSSR 150
            M+G+GER+NEAME AKEKIS+AGQ+IREG S+AS R   G Q   HR+QEAGQ+A HSG E+GL+   +A+E Y++ KHKAQE   S+ S  S +
Sbjct:    1 MSGVGERINEAMEGAKEKISDAGQSIREGVSRASERTAAGTQQATHRMQEAGQNAVHSGKESGLETGHSAEEAYEQAKHKAQESAPSTRSGSSHK 95
The following BLAST results are available for this feature:
BLAST of NO05G01990.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28182.13.300e-1757.89hypothetical protein Naga_100004g124 [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G01990NO05G01990Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G01990.1NO05G01990.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G01990.1.cds1NO05G01990.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G01990.1.cds2NO05G01990.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G01990.1.cds3NO05G01990.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G01990.1 ID=NO05G01990.1|Name=NO05G01990.1|organism=Nannochloropsis oceanica|type=mRNA|length=1541bp
TCTCTTTTTTACCGATTTTTTCTCTGTTTGTCTATATTTTGTCTGTGCAT
ACCCCTTCTCTTCCATCCTCCCTCTAACGTGTGCATATTTTGCTTTTACT
GGTTTTCTCAACTTTTCTTCCGCTCTCTTTGACATTTTACATGATAATGC
ACTTCAACTCCTTCGCGTTAGAATCAATCTGGGGCGGGCCACCTGTGAAG
CCACCGGTGGGAGCATGTCGCTTGCGAAAAGCCCCAGACCGGTATGAAGA
CATTGAATGAATCTCCGCGGGGGCGGCCCAAGATCCCCCCTCCTTCGATT
CATGCACTGTGATTGACTTAAATGGTCGATCCTTAAGGGGGCTCAAGGCC
GTCAGCTTCCCTTCTTCGTACTCATATCGCCGTTCCCTCTCCCTCGGCAG
CATCAAGTCTACCTTCCTCTCTGCAATAGTGCCCATCTTCGTCTCCTGCT
GCTCCGCCGCCGTATCTACCTTTTTGTCGCCTTGCGCCTCTCGAGCAAAC
GAAAGCTTAGATTGCCCGCCTTCCTCGCTTTCCGTGGGGCGTTGCTCAGC
TTGTGTCGTCTCTGTCTGCGTCGTCGTGGCACCGGCACCAGGGATAATAA
GCGTGGGCATTTCGACTGGCTCATCCTTGCCCCACGACGGGACGGCGGCT
CTGACTCCTTTCCTCATTCGAAACATCACTCCACCCAAAGCCCCATGTTG
TTGCTCCTTTATCTCAACCGGGGCGTGCAAGCCTTTTTCTGGCGTCATTG
CGGGCGAAGGCGAGCAAGGGTGCGGGAAATGGTGTCGATGGGGCTTGGCA
TCTTTCTTGCTCGGGACAAAGCCCTCGGACTCTCCTCCTATAACGCCACT
GAAGACTGATTGAGCGATGATGTAAATAGCCAGGCCGGTCTGATGCACGC
TCGACGACAGCATGTTAAGAAGCCCCATTTTCGTGTATGCAGATTACAAA
CTTTAGCAAGAATCCCCTTGTACATATGAGAATGCCGACTGAGTGCATAC
GCTATGGGTTGGTGGAATACAGCCCTCTACGTGTTTCGCGCCTTGTAGCA
TGTCTAGCGAACACTTATATTTTATATATATTCCACACGGAGCTCCGGAA
CATACTTCAGGCCCTGGGAACGTGCACATCGACGTTCCGCACGAGATTAA
AGGATTCCTGACGACAAAATTTGACCAACCTCAAGCATACCCACTTTCAA
AACAAGCTACAATGGCCGGCATCGGAGAGCGAGTTAATGAGGCGATGGAA
AGTGCAAAGGAAAAAATCTCCGAGGCCGGGCAGGCAATCCGCGAGGGGGC
GTCGCAGGCCAGCGGGCGGGCCAAAGAGGGGGCGCAACATACCGGCCACC
GCATTCAGGAGGCAGGACAGAGCGCGAAGCACTCAGGCATGGAGACGGGC
CTCAAGGCGAGTGACACGGCACAGGAGACGTACGATCGCACCAAACACAA
GGCCCAGGAAGGCATGTCGTCCAGCGGCTCCAGCGGCTCGAGCCGCTCAG
GCGGCACCAGTGGGACCGGCGCGAGCTCCAGTAGCATGTAA
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protein sequence of NO05G01990.1

>NO05G01990.1-protein ID=NO05G01990.1-protein|Name=NO05G01990.1|organism=Nannochloropsis oceanica|type=polypeptide|length=164bp
MSSEHLYFIYIPHGAPEHTSGPGNVHIDVPHEIKGFLTTKFDQPQAYPLS
KQATMAGIGERVNEAMESAKEKISEAGQAIREGASQASGRAKEGAQHTGH
RIQEAGQSAKHSGMETGLKASDTAQETYDRTKHKAQEGMSSSGSSGSSRS
GGTSGTGASSSSM*
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mRNA from alignment at chr5:541229..543252-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G01990.1 ID=NO05G01990.1|Name=NO05G01990.1|organism=Nannochloropsis oceanica|type=mRNA|length=2024bp|location=Sequence derived from alignment at chr5:541229..543252- (Nannochloropsis oceanica)
TCTCTTTTTTACCGATTTTTTCTCTGTTTGTCTATATTTTGTCTGTGCAT
ACCCCTTCTCTTCCATCCTCCCTCTAACGTGTGCATATTTTGCTTTTACT
GGTTTTCTCAACTTTTCTTCCGCTCTCTTTGACATTTTACATGATAATGC
ACTTCAACTCCTTCGCGTTAGAATCAATCTGGGGCGGGCCACCTGTGAAG
CCACCGGTGGGAGCATGTCGCTTGCGAAAAGCCCCAGACCGGTATGAAGA
CATTGAATGAATCTCCGCGGGGGCGGCCCAAGATCCCCCCTCCTTCGATT
CATGCACTGTGATTGACTTAAATGGTCGATCCTTAAGGGGGCTCAAGGCC
GTCAGCTTCCCTTCTTCGTACTCATATCGCCGTTCCCTCTCCCTCGGCAG
CATCAAGTCTACCTTCCTCTCTGCAATAGTGCCCATCTTCGTCTCCTGCT
GCTCCGCCGCCGTATCTACCTTTTTGTCGCCTTGCGCCTCTCGAGCAAAC
GAAAGCTTAGATTGCCCGCCTTCCTCGCTTTCCGTGGGGCGTTGCTCAGC
TTGTGTCGTCTCTGTCTGCGTCGTCGTGGCACCGGCACCAGGGATAATAA
GCGTGGGCATTTCGACTGGCTCATCCTTGCCCCACGACGGGACGGCGGCT
CTGACTCCTTTCCTCATTCGAAACATCACTCCACCCAAAGCCCCATGTTG
TTGCTCCTTTATCTCAACCGGGGCGTGCAAGCCTTTTTCTGGCGTCATTG
CGGGCGAAGGCGAGCAAGGGTGCGGGAAATGGTGTCGATGGGGCTTGGCA
TCTTTCTTGCTCGGGACAAAGCCCTCGGACTCTCCTCCTATAACGCCACT
GAAGACTGATTGAGCGATGATGTAAATAGCCAGGCCGGTCTGATGCACGC
TCGACGACAGCATGTTAAGAAGCCCCATTTTCGTGTATGCAGATTACAAA
CTTTAGCAAGAATCCCCTTGTACATATGAGAATGCCGACTGAGTGCATAC
GCTATGGGTTGGTGGAATACAGCCCTCTACGTGTTTCGCGCCTTGTAGCA
TGTCTAGCGAACACTTATATTTTATATATATTCCACACGGAGCTCCGGAA
CATACTTCAGGCCCTGGGAACGTGCACATCGACGTTCCGCACGAGATTAA
AGGATTCCTGACGACAAAATTTGACCAACCTCAAGGTGCGTGACACCTTT
GCTACCTTATGTTTGTTGGAAAGTATCGTTTACTTTGTTATGCTTAGCGT
TCAATTATGCCTTTCTTTTCTGTGCATTGCCTGACTCCCCAAGCCAACCT
CCCCTCTCGCACGCGAAAGGGCGCAGACACTTGTGGCTTCTTGCTGTACC
TTGCACTGTTTGTGCCAAGTGATGCCCTACGTGTCGCCTTTGTGATGCCC
TACGTGTCCTTGTTCATGAGCCAATTGTCATTGCCCTTCTTCCCATTCCC
TCCTTTTATCCGACAAAGCAGCATACCCACTTTCAAAACAAGCTACAATG
GCCGGCATCGGAGAGCGAGTGTAAGTAAAGGGGGAGGATTGTGAGCTAAG
GCTAAGCAGTGTCTACTTATGACGCATTTCGAGATGAAGAGCGTCCCGCC
AGTCTGCCCAGCTACCCGCCTCTCCCTTTCCCACCAAGATAACGAGTACT
TGCCGCTTTAAATGTCTAATGCCCCACCCATCTCTGTCCCCCCTTCCCAC
AAATTTCCACTACACAGTAATGAGGCGATGGAAAGTGCAAAGGAAAAAAT
CTCCGAGGCCGGGCAGGCAATCCGCGAGGGGGCGTCGCAGGCCAGCGGGC
GGGCCAAAGAGGGGGCGCAACATACCGGCCACCGCATTCAGGAGGCAGGA
CAGAGCGCGAAGCACTCAGGCATGGAGACGGGCCTCAAGGCGAGTGACAC
GGCACAGGAGACGTACGATCGCACCAAACACAAGGCCCAGGAAGGCATGT
CGTCCAGCGGCTCCAGCGGCTCGAGCCGCTCAGGCGGCACCAGTGGGACC
GGCGCGAGCTCCAGTAGCATGTAA
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Coding sequence (CDS) from alignment at chr5:541229..543252-

>NO05G01990.1 ID=NO05G01990.1|Name=NO05G01990.1|organism=Nannochloropsis oceanica|type=CDS|length=492bp|location=Sequence derived from alignment at chr5:541229..543252- (Nannochloropsis oceanica)
ATGTCTAGCGAACACTTATATTTTATATATATTCCACACGGAGCTCCGGA
ACATACTTCAGGCCCTGGGAACGTGCACATCGACGTTCCGCACGAGATTA
AAGGATTCCTGACGACAAAATTTGACCAACCTCAAGCATACCCACTTTCA
AAACAAGCTACAATGGCCGGCATCGGAGAGCGAGTTAATGAGGCGATGGA
AAGTGCAAAGGAAAAAATCTCCGAGGCCGGGCAGGCAATCCGCGAGGGGG
CGTCGCAGGCCAGCGGGCGGGCCAAAGAGGGGGCGCAACATACCGGCCAC
CGCATTCAGGAGGCAGGACAGAGCGCGAAGCACTCAGGCATGGAGACGGG
CCTCAAGGCGAGTGACACGGCACAGGAGACGTACGATCGCACCAAACACA
AGGCCCAGGAAGGCATGTCGTCCAGCGGCTCCAGCGGCTCGAGCCGCTCA
GGCGGCACCAGTGGGACCGGCGCGAGCTCCAGTAGCATGTAA
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Synonyms
Publications