NO05G01730.1, NO05G01730.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G01730.1
Unique NameNO05G01730.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1630
Alignment locationchr5:470212..472588 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:470212..472588 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G01730.1 vs.
Match: XP_016543963.1 (PREDICTED: sm-like protein LSM36B [Capsicum annuum]; PHT43459.1 U6 snRNA-associated Sm-like protein LSm6 [Capsicum baccatum]; PHT63408.1 U6 snRNA-associated Sm-like protein LSm6 [Capsicum annuum]; PHU06148.1 U6 snRNA-associated Sm-like protein LSm6 [Capsicum chinense])

HSP 1 Score: 133.7 bits (335), Expect = 3.400e-28
Identity = 64/82 (78.05%), Postives = 69/82 (84.15%), Query Frame = 0 
Query:   21 ASEAKPAQNKKVTEFLKTILGRPVVVKLNSGVDYRGVLACLDSFMNIAMEQTEEYVHGQLKAKYGDCFIRGNNVLYISTQKR 103
            A E  PA  K   +FLK+I GRPVVVKLNSGVDYRG+LACLD +MNIAMEQTEEYV+GQLK KYGD FIRGNNVLYIST KR
Sbjct:    4 AGEKGPATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKR 85
The following BLAST results are available for this feature:
BLAST of NO05G01730.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_016543963.13.400e-2878.05PREDICTED: sm-like protein LSM36B [Capsicum annuum... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G01730NO05G01730Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G01730.1NO05G01730.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G01730.1.cds1NO05G01730.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G01730.1.cds2NO05G01730.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G01730.1.cds3NO05G01730.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G01730.1.cds4NO05G01730.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G01730.1 ID=NO05G01730.1|Name=NO05G01730.1|organism=Nannochloropsis oceanica|type=mRNA|length=1630bp
CTCCATGTACGCTTAGCTCTATCTTCATTCATTGCGCTCGCTTTTTACTT
TGTTGGGCTTTCCCACTAACCTTGAGTGAAGGAAAACGTTCCATCAAATT
ACAATTTCCACTCTTACGGAGTTTCTCTGACTCTACAAAACCCCTCAAAC
CAAACTCTCTCACCCGCCCGGCCCGCAACTATACTCACAATTAGTTATTT
TGTGAATACTTGTGTCCACACTTCTTGCTTAGACACTCATAAAACACCGT
CGACCCCTCATCCGCCGAACGCAGCTGCATGGTGTAAAAGCTCATCTCTG
GATGGCCACACTTCGGGCAAGGCTCGTCTACCTTGGCATGCCGGCTGTCC
CCTCCCTCGTCGTTTCCATCCTCGCATACCCCATCTGGTTTGGCAGCCGC
TGCCAGCTCCTGGTACCAGCGCGGCGCAGGTTTCTCGGCACTGGTGGTGA
TTATTTCTACTTGACCCAACTCTTTGTTTGAAAGAAGATGAATAGATGTA
TGTAGTGAGCTGTTTGGCTTCGATGTGGCGGGGTGGGAAGCAACGGGTAT
GGAGTTGACGGAGTTTTGAGGCGGGAAACGTACCGTCAAAGGTCGTGGAA
AATTTACAGATGCGGCAGACAATTGGGTCCTCATCCGGCAGATCCAGTAG
TGCATGGCATTCATCGCAAAAAGGCACGGCTCCGCCTGAGGCCATAGGCG
TGGAGGGATGGATCGTCGGAGATTCCAACTGAGATATGGAGGAATGGAGG
AGTCGTGGGGAGGTTAGAGCGGCGCCTACCAGATACTGATAAAGTCTGTG
GACTATAATCCATATGAAATGCATGTCGACATGAAATGTACGTAGATGTA
TCTGTGTGAGGGTTGGAGTGAAAATGAGGTGGCTGGAAGCCTCGTAAGAA
ATACTCGCCAGTTACCAAGTAGTGTCTATCTTGAGATTTGGGCCGAAGAA
ATAATTTGGGCCGGAGAGATGAATTTGGGCCTCGGTTCGCAGCTTGTTTC
AGAACTCAATCCCTGTCATACACACAAACAACCACAGTAACGACAAACCA
AAGGTCATGTCTGACGCATCACCGTCTACCACGACGACGGCAGCGCAAGG
CCCCGGTGGCCCCACAGCGTCCGAGGCCAAGCCTGCTCAGAACAAAAAAG
TGACTGAGTTCCTTAAAACCATCTTGGGCCGCCCCGTGGTGGTTAAGCTG
AACTCGGGCGTGGACTATCGAGGCGTGCTGGCCTGTTTGGACAGCTTCAT
GAATATTGCCATGGAGCAAACGGAGGAGTACGTGCATGGACAGCTGAAGG
CTAAGTACGGTGATTGTTTCATTCGCGGAAATAATGTTTTGTATATCTCT
ACGCAAAAGCGGAGGTAGCATCTTCTCCCCTTAAATGGTGCATTTGAGAG
AAGGGCGGGCACTAAGTGATGGGCACGTAAAGCTCATTGAACGGAGGGGA
GAGAAGCAAGTCTATGTTTATTAAAGAGCGCGTGCAATCACCAATACGGG
CCACCGGCCAAAGGACAAAGAGGGAAAGTATAGAAGTAGGGATTATTGTT
TGTTTTCCCGCTTTTGATCGCGGTGCAAAGTATGGCTGCCGGTCCTGCGT
TGTAATAAAATAACAACAGATACAAACCCA
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protein sequence of NO05G01730.1

>NO05G01730.1-protein ID=NO05G01730.1-protein|Name=NO05G01730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=104bp
MSDASPSTTTTAAQGPGGPTASEAKPAQNKKVTEFLKTILGRPVVVKLNS
GVDYRGVLACLDSFMNIAMEQTEEYVHGQLKAKYGDCFIRGNNVLYISTQ
KRR*
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mRNA from alignment at chr5:470212..472588+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G01730.1 ID=NO05G01730.1|Name=NO05G01730.1|organism=Nannochloropsis oceanica|type=mRNA|length=2377bp|location=Sequence derived from alignment at chr5:470212..472588+ (Nannochloropsis oceanica)
CTCCATGTACGCTTAGCTCTATCTTCATTCATTGCGCTCGCTTTTTACTT
TGTTGGGCTTTCCCACTAACCTTGAGTGAAGGAAAACGTTCCATCAAATT
ACAATTTCCACTCTTACGGAGTTTCTCTGACTCTACAAAACCCCTCAAAC
CAAACTCTCTCACCCGCCCGGCCCGCAACTATACTCACAATTAGTTATTT
TGTGAATACTTGTGTCCACACTTCTTGCTTAGACACTCATAAAACACCGT
CGACCCCTCATCCGCCGAACGCAGCTGCATGGTGTAAAAGCTCATCTCTG
GATGGCCACACTTCGGGCAAGGCTCGTCTACCTTGGCATGCCGGCTGTCC
CCTCCCTCGTCGTTTCCATCCTCGCATACCCCATCTGGTTTGGCAGCCGC
TGCCAGCTCCTGGTACCAGCGCGGCGCAGGTTTCTCGGCACTGGTGGTGA
TTATTTCTACTTGACCCAACTCTTTGTTTGAAAGAAGATGAATAGATGTA
TGTAGTGAGCTGTTTGGCTTCGATGTGGCGGGGTGGGAAGCAACGGGTAT
GGAGTTGACGGAGTTTTGAGGCGGGAAACGTACCGTCAAAGGTCGTGGAA
AATTTACAGATGCGGCAGACAATTGGGTCCTCATCCGGCAGATCCAGTAG
TGCATGGCATTCATCGCAAAAAGGCACGGCTCCGCCTGAGGCCATAGGCG
TGGAGGGATGGATCGTCGGAGATTCCAACTGAGATATGGAGGAATGGAGG
AGTCGTGGGGAGGTTAGAGCGGCGCCTACCAGATACTGATAAAGTCTGTG
GACTATAATCCATATGAAATGCATGTCGACATGAAATGTACGTAGATGTA
TCTGTGTGAGGGTTGGAGTGAAAATGAGGTGGCTGGAAGCCTCGTAAGAA
ATACTCGCCAGTTACCAAGTAGTGTCTATCTTGAGATTTGGGCCGAAGAA
ATAATTTGGGCCGGAGAGATGAATTTGGGCCTCGGTTCGCAGCTTGTTTC
AGAACTCAATCCCTGTCATACACACAAACAACCACAGTAACGACAAACCA
AAGGTCATGTCTGACGCATCACCGTCTACCACGACGACGGCAGCGCAAGG
CCCCGGTGGCCCCACAGCGTCCGAGGCCAAGCCTGCTCAGGTGAGGAAGC
AATGGAAGAATTGTGATGATGATGCGGATTGGAGGATCGAATGACACGTC
TGTGTGAGCTAGAAGTGCGCTAGGCAGCCAATTTCACCCAGTAAGGACAA
CCACGATCAAATCATGTGGTGGTGGTCGTGCAGTCGCTGTATTGGCATGG
TGCCTCCAAGCATGCCGTTCATTTCTGCTCCCCCTAGCTCTCTCCCTCAC
ACCCTTCCTCCCTCGTTTTCCAAACCATTACCACCTGCCCCGACAGAACA
AAAAAGTGACTGAGTTCCTTAAAACCATCTTGGGCCGCCCCGTGGTGGTT
AAGCTGAACTCGGGCGTGGACTATCGAGGTACGTTGGGCTATTAGGGTGA
GGGTGGGGGCGAGGTCGGGCATGTGGCGGGTGCAGCAAAGCCCCAGGTGT
GCATCGAAAAGAATAAAGATGCGATGGACAACAGCTTGCTGTCCATCAAT
GTGTGCTGGCACAGATTCTTTGAGAAGGTAGCAGGTCGTCACCGTCTTAT
ACTCTCCCTATCAACCACTCTTCCTGCCTTTGAGTTAAGGCGTGCTGGCC
TGTTTGGACAGCTTCATGAATATTGCCATGGAGCAAACGGAGGAGTACGT
GCATGGACAGCTGAAGGCTAAGTACGGTGATTGTTTCATTCGCGGAAATA
ATGGTACGTTTATTTTTCTTAGCAGGGATGTGAGTGGATGCACTTATAGT
ACATACTTGCAAGGCAGCCTTCTTCCGCGCCTTGCATCGGCCTCACGTCC
TTGATTGAAATTTAGTCAATTTCGCCACATGCCTACAGGTGCGACAAATA
TAGTGCATCGTGCGTCTTCGTGGGCGTGTTGAATGTGTCTTGAGGCTTTC
ATGCCTGAAAATCCGTTTTTAAACCTCCTTTTAACCCTCACCCTTTCATC
CTCCGCCATTTGGACCCCCAACCTTCAACACAGTTTTGTATATCTCTACG
CAAAAGCGGAGGTAGCATCTTCTCCCCTTAAATGGTGCATTTGAGAGAAG
GGCGGGCACTAAGTGATGGGCACGTAAAGCTCATTGAACGGAGGGGAGAG
AAGCAAGTCTATGTTTATTAAAGAGCGCGTGCAATCACCAATACGGGCCA
CCGGCCAAAGGACAAAGAGGGAAAGTATAGAAGTAGGGATTATTGTTTGT
TTTCCCGCTTTTGATCGCGGTGCAAAGTATGGCTGCCGGTCCTGCGTTGT
AATAAAATAACAACAGATACAAACCCA
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Coding sequence (CDS) from alignment at chr5:470212..472588+

>NO05G01730.1 ID=NO05G01730.1|Name=NO05G01730.1|organism=Nannochloropsis oceanica|type=CDS|length=312bp|location=Sequence derived from alignment at chr5:470212..472588+ (Nannochloropsis oceanica)
ATGTCTGACGCATCACCGTCTACCACGACGACGGCAGCGCAAGGCCCCGG
TGGCCCCACAGCGTCCGAGGCCAAGCCTGCTCAGAACAAAAAAGTGACTG
AGTTCCTTAAAACCATCTTGGGCCGCCCCGTGGTGGTTAAGCTGAACTCG
GGCGTGGACTATCGAGGCGTGCTGGCCTGTTTGGACAGCTTCATGAATAT
TGCCATGGAGCAAACGGAGGAGTACGTGCATGGACAGCTGAAGGCTAAGT
ACGGTGATTGTTTCATTCGCGGAAATAATGTTTTGTATATCTCTACGCAA
AAGCGGAGGTAG
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Synonyms
Publications