NO05G01680.1, NO05G01680.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G01680.1
Unique NameNO05G01680.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1796
Alignment locationchr5:459722..461599 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:459722..461599 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO05G01680.1 vs.
Match: EWM28264.1 (methionine aminopeptidase 2b [Nannochloropsis gaditana])

HSP 1 Score: 839.0 bits (2166), Expect = 8.600e-240
Identity = 437/542 (80.63%), Postives = 467/542 (86.16%), Query Frame = 0 
Query:    1 MTKIELKPEPVDLNPMKEEVEDDEEEDDGEQQGGAEGEENAGAGNGANGDKKKKKKKKKVKSTTAYVEAGADAEVAAAAVTVQKECATVKQEPGDQEGDDDDAEDDALAADGVAKKKKKKKKKGGKGGGGGSIGAVPGQLKPATGVPSKKAPARGVKGLTDSYIRYGQTEPPTIPVAQLFAEGHFPEGEIQPHPGDFNTFRITSEEKRALERLETDLYDKVRMASEVHRQVRRYAQSFIEPGIKLIDMCERLENKNRELMVEAGLERGVGFPTGCSLNHVAAHYTPNCGDETVLGYGDVMKVDFGCQIEGRIIDCAWTVAFDPTYDELLEAAREATDTGIRTAGIDVRLCDVGEAIQETMESFEVTIQGTTYPVKSIRNLNGHSIGPYEIHAGKSVPIVKGGDATKMEEGEFFAIETFGSTGRAFVQEDMECSHYMKAFEAPHVPLRMASAKRLLSHIDKTFKTLAFCRRWLERPDGGSGFIHGQKGKQEKYLGALKNLCDVGIVVPYPPLVDVRGSYVAQYEHTILLRPTCKEVLSRGDDF 543
            MT  E+K    +   ++E  E++EEEDD +Q G AEG+ +A   NG   +KKKKKKKKK KS        A +E +AA     +EC  V+   GD + D ++  D A+ A+   KKKKKKKKKG KG  G S GAVPGQL PATGVP KKAP RGV G TDSYIRYGQTEPPTIPVA LFAEGHFP+GEIQPHPGD NTFRITSEEKRA ERLE DLYDKVR ASEVHRQVR+YAQSFIEPGIKLIDMCERLENKNREL+ EAGLERGVGFPTGCSLNHVAAHYTPN GDETVL YGDVMKVDFGCQIEGRIID A+TV+FDPTYD LLEA REATDTGIRTAGIDVRLCDVGEAIQETMES+EVTI GTTYPVKSIRNLNGHSIGPYEIHAGKSVPIVKGGDATKMEEGEF+AIETFGSTGRAFVQED+ECSHYMKAFEAPHVPLRMASAKRLLSHID+TFKTLAFCRRWLERPDGGS FIHGQKGKQEKYLGALKNLCDVGIVVPYPPLVD++GSYVAQYEHTILLRPTCKEVLSRGDDF
Sbjct:   27 MTTTEVKAVHAEAK-VQEGAEEEEEEDD-DQGGAAEGQGDATTSNGGTANKKKKKKKKKAKSAGT---GSAPSETSAAG----EEC-DVEHASGDNDNDAEEDGDGAITAEDAIKKKKKKKKKGVKGASGVS-GAVPGQLHPATGVPGKKAPGRGVSGFTDSYIRYGQTEPPTIPVASLFAEGHFPKGEIQPHPGDMNTFRITSEEKRAAERLEADLYDKVRSASEVHRQVRKYAQSFIEPGIKLIDMCERLENKNRELIQEAGLERGVGFPTGCSLNHVAAHYTPNAGDETVLQYGDVMKVDFGCQIEGRIIDSAFTVSFDPTYDNLLEAVREATDTGIRTAGIDVRLCDVGEAIQETMESYEVTIDGTTYPVKSIRNLNGHSIGPYEIHAGKSVPIVKGGDATKMEEGEFYAIETFGSTGRAFVQEDLECSHYMKAFEAPHVPLRMASAKRLLSHIDRTFKTLAFCRRWLERPDGGSAFIHGQKGKQEKYLGALKNLCDVGIVVPYPPLVDIKGSYVAQYEHTILLRPTCKEVLSRGDDF 557
The following BLAST results are available for this feature:
BLAST of NO05G01680.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28264.18.600e-24080.63methionine aminopeptidase 2b [Nannochloropsis gadi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G01680NO05G01680Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G01680.1NO05G01680.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G01680.1.cds1NO05G01680.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G01680.1.cds2NO05G01680.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G01680.1 ID=NO05G01680.1|Name=NO05G01680.1|organism=Nannochloropsis oceanica|type=mRNA|length=1796bp
CAGCACAACCACAGTACTGCATTTGACTGCGCAAAACAATGACCAAGATC
GAGTTAAAGCCGGAGCCTGTGGATCTCAATCCCATGAAGGAGGAAGTGGA
GGACGATGAGGAGGAGGACGACGGAGAGCAACAGGGCGGGGCGGAGGGTG
AGGAGAACGCGGGAGCTGGGAATGGTGCCAATGGGGACAAGAAAAAGAAG
AAAAAGAAGAAAAAGGTCAAATCCACCACTGCTTATGTCGAAGCCGGTGC
CGATGCGGAGGTCGCAGCTGCTGCTGTGACAGTCCAGAAGGAATGTGCGA
CAGTCAAACAGGAGCCTGGGGATCAAGAGGGTGACGATGATGATGCCGAG
GACGACGCCCTCGCAGCGGACGGCGTAGCTAAGAAGAAGAAGAAGAAAAA
GAAGAAGGGGGGCAAAGGAGGCGGCGGCGGGAGCATTGGTGCAGTGCCAG
GGCAGCTTAAGCCTGCGACGGGTGTCCCGTCCAAGAAGGCACCGGCGAGG
GGAGTTAAGGGGCTTACGGACAGCTATATTCGGTACGGGCAGACAGAGCC
GCCGACCATACCCGTGGCGCAGCTTTTCGCGGAGGGGCATTTCCCGGAGG
GGGAGATCCAGCCACATCCTGGTGACTTTAATACGTTTCGCATCACCTCG
GAGGAAAAAAGGGCTTTGGAGCGATTGGAGACGGATTTATACGATAAGGT
TCGAATGGCTTCGGAAGTACATAGGCAGGTGAGGAGGTATGCGCAGAGTT
TTATCGAACCGGGGATCAAATTGATTGATATGTGCGAGCGGTTGGAGAAC
AAAAATAGGGAGTTGATGGTGGAGGCGGGTTTGGAGAGGGGGGTGGGGTT
TCCAACGGGGTGTAGTTTAAATCATGTGGCTGCGCATTACACACCGAATT
GTGGGGATGAGACTGTGCTGGGGTACGGGGATGTGATGAAAGTGGATTTT
GGGTGCCAGATTGAGGGGAGGATTATTGATTGTGCGTGGACGGTGGCCTT
TGATCCGACGTATGACGAGTTGCTGGAGGCGGCGAGGGAGGCGACGGATA
CGGGGATCCGGACGGCAGGTATCGACGTGCGGTTATGTGATGTGGGGGAG
GCGATCCAAGAGACCATGGAGAGCTTTGAGGTGACCATTCAGGGAACCAC
GTACCCGGTGAAGAGCATTCGAAACCTGAACGGGCATAGCATTGGCCCAT
ATGAGATCCACGCGGGGAAGTCAGTGCCTATCGTGAAGGGGGGGGACGCT
ACCAAGATGGAGGAGGGGGAGTTCTTTGCCATTGAGACGTTCGGATCGAC
GGGGCGGGCGTTTGTGCAGGAGGACATGGAATGTAGTCATTATATGAAGG
CTTTTGAAGCTCCCCATGTGCCCTTGCGAATGGCCTCTGCCAAGCGGTTG
CTCTCGCACATTGACAAAACCTTCAAAACGCTGGCGTTTTGCCGTCGGTG
GCTCGAAAGGCCCGACGGGGGCTCGGGGTTTATTCACGGACAGAAAGGGA
AACAGGAGAAGTATCTGGGCGCGCTGAAGAATTTGTGTGATGTGGGGATT
GTGGTGCCGTACCCGCCGCTTGTGGACGTAAGAGGGAGTTATGTCGCGCA
GTATGAGCACACGATCTTGTTGAGGCCAACGTGCAAGGAGGTATTGTCGA
GAGGCGATGATTTCTAGGGGGGGAGAGGGAGGGGAGGGAATGTGAGAGAT
GAAGAAGACAATATCAAAGAATGGGGGTAAAGTTTCAGAGGTAGATTGAG
ATTTTGTCCACTTTGTTCCGCGTTGTCAAAGATTGCTGGTCTTATC
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protein sequence of NO05G01680.1

>NO05G01680.1-protein ID=NO05G01680.1-protein|Name=NO05G01680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=543bp
MTKIELKPEPVDLNPMKEEVEDDEEEDDGEQQGGAEGEENAGAGNGANGD
KKKKKKKKKVKSTTAYVEAGADAEVAAAAVTVQKECATVKQEPGDQEGDD
DDAEDDALAADGVAKKKKKKKKKGGKGGGGGSIGAVPGQLKPATGVPSKK
APARGVKGLTDSYIRYGQTEPPTIPVAQLFAEGHFPEGEIQPHPGDFNTF
RITSEEKRALERLETDLYDKVRMASEVHRQVRRYAQSFIEPGIKLIDMCE
RLENKNRELMVEAGLERGVGFPTGCSLNHVAAHYTPNCGDETVLGYGDVM
KVDFGCQIEGRIIDCAWTVAFDPTYDELLEAAREATDTGIRTAGIDVRLC
DVGEAIQETMESFEVTIQGTTYPVKSIRNLNGHSIGPYEIHAGKSVPIVK
GGDATKMEEGEFFAIETFGSTGRAFVQEDMECSHYMKAFEAPHVPLRMAS
AKRLLSHIDKTFKTLAFCRRWLERPDGGSGFIHGQKGKQEKYLGALKNLC
DVGIVVPYPPLVDVRGSYVAQYEHTILLRPTCKEVLSRGDDF*
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mRNA from alignment at chr5:459722..461599+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G01680.1 ID=NO05G01680.1|Name=NO05G01680.1|organism=Nannochloropsis oceanica|type=mRNA|length=1878bp|location=Sequence derived from alignment at chr5:459722..461599+ (Nannochloropsis oceanica)
CAGCACAACCACAGTACTGCATTTGACTGCGCAAAACAATGACCAAGATC
GAGTTAAAGCCGGAGCCTGTGGATCTCAATCCCATGAAGGAGGAAGTGGA
GGACGATGAGGAGGAGGACGACGGAGAGCAACAGGGCGGGGCGGAGGGTG
AGGAGAACGCGGGAGCTGGGAATGGTGCCAATGGGGACAAGAAAAAGAAG
AAAAAGAAGAAAAAGGTCAAATCCACCACTGCTTATGTCGAAGCCGGTGC
CGATGCGGAGGTCGCAGCTGCTGCTGTGACAGGTGAGAAGGGAAGCGAGG
GAGGCAAGGCCTTATTTCTGAAGATACTCACTCCGTTTCCTCTTTCATAT
TACCGCCCATACAGTCCAGAAGGAATGTGCGACAGTCAAACAGGAGCCTG
GGGATCAAGAGGGTGACGATGATGATGCCGAGGACGACGCCCTCGCAGCG
GACGGCGTAGCTAAGAAGAAGAAGAAGAAAAAGAAGAAGGGGGGCAAAGG
AGGCGGCGGCGGGAGCATTGGTGCAGTGCCAGGGCAGCTTAAGCCTGCGA
CGGGTGTCCCGTCCAAGAAGGCACCGGCGAGGGGAGTTAAGGGGCTTACG
GACAGCTATATTCGGTACGGGCAGACAGAGCCGCCGACCATACCCGTGGC
GCAGCTTTTCGCGGAGGGGCATTTCCCGGAGGGGGAGATCCAGCCACATC
CTGGTGACTTTAATACGTTTCGCATCACCTCGGAGGAAAAAAGGGCTTTG
GAGCGATTGGAGACGGATTTATACGATAAGGTTCGAATGGCTTCGGAAGT
ACATAGGCAGGTGAGGAGGTATGCGCAGAGTTTTATCGAACCGGGGATCA
AATTGATTGATATGTGCGAGCGGTTGGAGAACAAAAATAGGGAGTTGATG
GTGGAGGCGGGTTTGGAGAGGGGGGTGGGGTTTCCAACGGGGTGTAGTTT
AAATCATGTGGCTGCGCATTACACACCGAATTGTGGGGATGAGACTGTGC
TGGGGTACGGGGATGTGATGAAAGTGGATTTTGGGTGCCAGATTGAGGGG
AGGATTATTGATTGTGCGTGGACGGTGGCCTTTGATCCGACGTATGACGA
GTTGCTGGAGGCGGCGAGGGAGGCGACGGATACGGGGATCCGGACGGCAG
GTATCGACGTGCGGTTATGTGATGTGGGGGAGGCGATCCAAGAGACCATG
GAGAGCTTTGAGGTGACCATTCAGGGAACCACGTACCCGGTGAAGAGCAT
TCGAAACCTGAACGGGCATAGCATTGGCCCATATGAGATCCACGCGGGGA
AGTCAGTGCCTATCGTGAAGGGGGGGGACGCTACCAAGATGGAGGAGGGG
GAGTTCTTTGCCATTGAGACGTTCGGATCGACGGGGCGGGCGTTTGTGCA
GGAGGACATGGAATGTAGTCATTATATGAAGGCTTTTGAAGCTCCCCATG
TGCCCTTGCGAATGGCCTCTGCCAAGCGGTTGCTCTCGCACATTGACAAA
ACCTTCAAAACGCTGGCGTTTTGCCGTCGGTGGCTCGAAAGGCCCGACGG
GGGCTCGGGGTTTATTCACGGACAGAAAGGGAAACAGGAGAAGTATCTGG
GCGCGCTGAAGAATTTGTGTGATGTGGGGATTGTGGTGCCGTACCCGCCG
CTTGTGGACGTAAGAGGGAGTTATGTCGCGCAGTATGAGCACACGATCTT
GTTGAGGCCAACGTGCAAGGAGGTATTGTCGAGAGGCGATGATTTCTAGG
GGGGGAGAGGGAGGGGAGGGAATGTGAGAGATGAAGAAGACAATATCAAA
GAATGGGGGTAAAGTTTCAGAGGTAGATTGAGATTTTGTCCACTTTGTTC
CGCGTTGTCAAAGATTGCTGGTCTTATC
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Coding sequence (CDS) from alignment at chr5:459722..461599+

>NO05G01680.1 ID=NO05G01680.1|Name=NO05G01680.1|organism=Nannochloropsis oceanica|type=CDS|length=1629bp|location=Sequence derived from alignment at chr5:459722..461599+ (Nannochloropsis oceanica)
ATGACCAAGATCGAGTTAAAGCCGGAGCCTGTGGATCTCAATCCCATGAA
GGAGGAAGTGGAGGACGATGAGGAGGAGGACGACGGAGAGCAACAGGGCG
GGGCGGAGGGTGAGGAGAACGCGGGAGCTGGGAATGGTGCCAATGGGGAC
AAGAAAAAGAAGAAAAAGAAGAAAAAGGTCAAATCCACCACTGCTTATGT
CGAAGCCGGTGCCGATGCGGAGGTCGCAGCTGCTGCTGTGACAGTCCAGA
AGGAATGTGCGACAGTCAAACAGGAGCCTGGGGATCAAGAGGGTGACGAT
GATGATGCCGAGGACGACGCCCTCGCAGCGGACGGCGTAGCTAAGAAGAA
GAAGAAGAAAAAGAAGAAGGGGGGCAAAGGAGGCGGCGGCGGGAGCATTG
GTGCAGTGCCAGGGCAGCTTAAGCCTGCGACGGGTGTCCCGTCCAAGAAG
GCACCGGCGAGGGGAGTTAAGGGGCTTACGGACAGCTATATTCGGTACGG
GCAGACAGAGCCGCCGACCATACCCGTGGCGCAGCTTTTCGCGGAGGGGC
ATTTCCCGGAGGGGGAGATCCAGCCACATCCTGGTGACTTTAATACGTTT
CGCATCACCTCGGAGGAAAAAAGGGCTTTGGAGCGATTGGAGACGGATTT
ATACGATAAGGTTCGAATGGCTTCGGAAGTACATAGGCAGGTGAGGAGGT
ATGCGCAGAGTTTTATCGAACCGGGGATCAAATTGATTGATATGTGCGAG
CGGTTGGAGAACAAAAATAGGGAGTTGATGGTGGAGGCGGGTTTGGAGAG
GGGGGTGGGGTTTCCAACGGGGTGTAGTTTAAATCATGTGGCTGCGCATT
ACACACCGAATTGTGGGGATGAGACTGTGCTGGGGTACGGGGATGTGATG
AAAGTGGATTTTGGGTGCCAGATTGAGGGGAGGATTATTGATTGTGCGTG
GACGGTGGCCTTTGATCCGACGTATGACGAGTTGCTGGAGGCGGCGAGGG
AGGCGACGGATACGGGGATCCGGACGGCAGGTATCGACGTGCGGTTATGT
GATGTGGGGGAGGCGATCCAAGAGACCATGGAGAGCTTTGAGGTGACCAT
TCAGGGAACCACGTACCCGGTGAAGAGCATTCGAAACCTGAACGGGCATA
GCATTGGCCCATATGAGATCCACGCGGGGAAGTCAGTGCCTATCGTGAAG
GGGGGGGACGCTACCAAGATGGAGGAGGGGGAGTTCTTTGCCATTGAGAC
GTTCGGATCGACGGGGCGGGCGTTTGTGCAGGAGGACATGGAATGTAGTC
ATTATATGAAGGCTTTTGAAGCTCCCCATGTGCCCTTGCGAATGGCCTCT
GCCAAGCGGTTGCTCTCGCACATTGACAAAACCTTCAAAACGCTGGCGTT
TTGCCGTCGGTGGCTCGAAAGGCCCGACGGGGGCTCGGGGTTTATTCACG
GACAGAAAGGGAAACAGGAGAAGTATCTGGGCGCGCTGAAGAATTTGTGT
GATGTGGGGATTGTGGTGCCGTACCCGCCGCTTGTGGACGTAAGAGGGAG
TTATGTCGCGCAGTATGAGCACACGATCTTGTTGAGGCCAACGTGCAAGG
AGGTATTGTCGAGAGGCGATGATTTCTAG
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Synonyms
Publications