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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr5 | genome | chr5:414919..418068 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G01460.3 vs.
Match: EWM28284.1 (xanthine uracil vitamin c permease [Nannochloropsis gaditana]) HSP 1 Score: 809.3 bits (2089), Expect = 7.800e-231 Identity = 439/576 (76.22%), Postives = 483/576 (83.85%), Query Frame = 0
Query: 5 KRRLHGAVCEFFEVDKRHTTVATEVRAGITTFLTMSYILLVNPQILAQIGFPKSDVVVATAVGAGLASMVCGIFGNLPFGLAPGTGLSAYLSYGLVLAGVLTRPQAMTVCFLSGFALGVSALAQVSTVIMRVIPRAVKLATVVGMGLLIALIGMVSIRLVVPNEDTLVTLGDFSDYHIWLALVGLVVTGSMLFHQVKGGVLAGIVLITVFVWCMDHDGPSEIFSIPHLEYGVTRNIDLTPASLSWEMLPPLLAFLFVGLFDISGVMFGLSSLAKIMEEDGHIPGSIWAFLGSGLGTLVAAMAGSSPIIIHVESAAGIREGGRTGLTAVVVGLLFFLSLFFAPLFGHVPTAATAPILILVGAMMIGESQHIDWADMSQAIPAFLTSMMMPFTFSIPNGILFGVGMSVTFFVTTGEFLSYLPRWMWGGGREGIEIGKGGGMVEEEEQARRLQTIDERSRLK-APPIPSPGKFHPGVGGGAREGDLAFGSPSASHQQHHTLFDEQPMTRRFSLILPKEEADEQAARDMELSSSLTHAGGGGHHMLSHQPPYHRHRSGSGSGSDRSSGGGAGEGAFAMQI 580
K RLHGA+CEFFE+DKR ++VATE+RAGITTFLTMSYILLVNPQILAQIG+PKSDVV+ATAVGAGLAS+VCGIFGNLPFGLAPGTGLSAYLSYGLVLAGVL+RPQAMT CFLSG AL + ALAQ+STVIMRVIPRAVKLATVVGMGLLIALIGMVSI LVVPNEDTLVTLGD SDYHIWLAL GL+VTGSMLFHQ+KGGVLA IVLIT+ VWC+D DGPS + S+PHL+YG TRNID+ P+SLS +MLPP+LAFLFVG+FDISGVMFGLSSLA IMEEDGHIPGSIWAFLG LGT+VAAMAG SPIIIHVESAAGIREGG+TGLTAVVVGLLF LSLFFAPLFG VPTAATAPILILVGAMMIGESQHIDWADMSQAIPAFLTSMMMPFTFSIPNGILFGVGMS TFF+TTGEF+ YLP + G + +GG EE +++RRLQTIDERSRL+ +PP+PS G +G G ++H Q H LFDEQP+TRRFSLIL KEEADE +ARD ELSSSLT A GG S + + + S D S G EG FA QI
Sbjct: 5 KGRLHGALCEFFEIDKRQSSVATEIRAGITTFLTMSYILLVNPQILAQIGYPKSDVVIATAVGAGLASLVCGIFGNLPFGLAPGTGLSAYLSYGLVLAGVLSRPQAMTACFLSGAALALCALAQLSTVIMRVIPRAVKLATVVGMGLLIALIGMVSIGLVVPNEDTLVTLGDLSDYHIWLALFGLIVTGSMLFHQIKGGVLASIVLITLIVWCVDQDGPSRVLSVPHLQYGATRNIDVRPSSLSLDMLPPVLAFLFVGIFDISGVMFGLSSLAGIMEEDGHIPGSIWAFLGPALGTMVAAMAGCSPIIIHVESAAGIREGGKTGLTAVVVGLLFLLSLFFAPLFGKVPTAATAPILILVGAMMIGESQHIDWADMSQAIPAFLTSMMMPFTFSIPNGILFGVGMSATFFLTTGEFMDYLPGRLLG-------MKRGGKEEEEAKESRRLQTIDERSRLRLSPPVPS---------GKGPKGGSGSGLDHSAHHQPHMLFDEQPLTRRFSLILSKEEADEHSARDRELSSSLTGASGG-----SVRHAFLPAAAASRCERDGSDGESGEEGIFAAQI 559
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G01460.3 ID=NO05G01460.3|Name=NO05G01460.3|organism=Nannochloropsis oceanica|type=mRNA|length=2657bp
AACACCCACTTGACAGTAGATAGTTTTTGAATAGGGCTGTGCTATTAGAT
AAGACGCGCATTGTCTTCAAGGAGGGCCCCACTTCTGATTTCCTCAGCGC
GGTAGTTTCCAACCAGTCAAGATGGTGGCGTGGAAGCGGCGGCTGCATGG
TGCCGTCTGCGAGTTCTTCGAGGTAGACAAGCGGCATACCACCGTGGCCA
CCGAGGTCCGGGCGGGTATCACCACATTTTTGACTATGAGCTACATTCTG
CTTGTCAACCCTCAAATCTTGGCGCAGATAGGCTTCCCAAAATCCGACGT
TGTGGTCGCCACCGCCGTGGGCGCCGGGCTCGCCAGCATGGTCTGTGGGA
TCTTTGGCAACTTGCCTTTTGGTCTTGCGCCTGGCACGGGCTTGAGCGCG
TACCTATCTTATGGCCTCGTCCTCGCTGGGGTGCTCACTCGCCCGCAAGC
GATGACGGTATGTTTTTTGTCGGGGTTTGCACTGGGCGTATCAGCCTTGG
CGCAGGTTAGCACGGTCATTATGAGGGTTATACCAAGAGCAGTAAAACTC
GCGACAGTCGTGGGGATGGGCCTATTGATTGCATTAATTGGCATGGTGTC
TATAAGGCTGGTGGTCCCGAATGAAGATACGTTGGTGACGCTTGGGGATT
TTTCGGACTACCATATATGGTTGGCGCTTGTGGGGTTGGTGGTGACAGGT
TCAATGCTCTTCCACCAAGTAAAGGGTGGGGTGCTCGCGGGTATCGTCCT
CATTACCGTTTTTGTCTGGTGTATGGATCATGACGGCCCCTCAGAGATCT
TTTCCATCCCCCATCTGGAATACGGCGTCACGAGAAACATCGACTTGACG
CCCGCTTCCTTATCCTGGGAAATGCTCCCTCCATTGCTCGCGTTTTTATT
TGTCGGTTTATTTGACATCTCGGGAGTGATGTTCGGGCTGTCGTCTCTCG
CAAAGATAATGGAGGAGGATGGACATATACCGGGTAGTATTTGGGCGTTC
TTAGGGTCGGGTTTAGGCACCTTGGTGGCAGCTATGGCCGGGAGTTCGCC
CATCATCATCCACGTGGAAAGCGCGGCGGGGATCAGGGAAGGAGGAAGGA
CGGGATTGACGGCTGTTGTTGTAGGATTATTGTTTTTTTTGAGTTTATTT
TTCGCGCCTTTATTTGGACACGTCCCGACGGCGGCGACAGCACCAATTTT
GATTCTGGTGGGGGCGATGATGATAGGAGAGAGTCAGCACATCGACTGGG
CGGACATGAGTCAGGCGATCCCGGCGTTTTTGACGAGCATGATGATGCCC
TTCACGTTCTCGATCCCGAATGGAATTTTGTTCGGGGTGGGGATGAGCGT
GACGTTTTTTGTGACGACTGGCGAGTTCCTGAGTTATTTGCCCCGGTGGA
TGTGGGGGGGGGGGAGGGAGGGAATTGAGATAGGAAAGGGTGGAGGGATG
GTGGAAGAAGAGGAGCAGGCAAGGAGGTTGCAGACAATTGATGAACGGAG
TCGGTTAAAGGCGCCGCCTATACCATCGCCGGGGAAATTCCATCCGGGGG
TCGGAGGAGGAGCAAGGGAAGGAGATCTTGCATTTGGATCGCCGTCCGCA
TCGCACCAGCAGCATCATACTCTCTTCGATGAACAGCCAATGACAAGGAG
GTTTTCCTTGATTTTACCTAAGGAAGAGGCCGACGAGCAGGCTGCCAGGG
ATATGGAGTTGTCGTCGTCGTTGACGCATGCGGGGGGAGGAGGGCACCAT
ATGCTGAGTCACCAGCCACCGTATCACCGGCATAGGAGTGGAAGTGGAAG
CGGGAGCGATCGAAGTTCAGGCGGAGGGGCGGGGGAGGGGGCATTTGCGA
TGCAGATATAGGTGAGGAGAGAATGAAAGGACGGAAGGGTAGTGAAGATG
AATACGATCATGTACGTATGTAGGGAGAGAGATGGAAGTTAACCAGAACG
GAAACGAAAAACGCTTGCGAGCGCCCCCCCTCAAAAGAAGATTAACGCCT
AGTGTGCAAGCTCCTTCAAAACTTTTAATCATTGACCCTCCTTCTCAACT
GCGAAAGAAAACAGAAGTTTGGAAGAAATGAAAAAGAATGGCAGGAGGGT
AATGTGTCTACCCCTTCCAGGGTTGAGGTGTATGTTAAATGGAGGAGATA
AAGTGGAAATAACCTCGCTGAGTTGGTATGTAAGCTTAATTTTTGCTCGA
GCGGCAAGCACATCTTAAGTCGTGAAATAGAGCTTCCCATCCAAAACGGT
CAAGAAAAGGACCGAAAATGAGCTTCGGAGACGGTGGGAGGTTGCCATTG
CATATGATTACACTTTCGTGGACAATCTATTTCTTATTTCTTGCCTGCTG
ACACCACTTGGACTTAACGCAAGTCACCTTGTTGACTGCAATGTCTCTTG
CCGCGCGCTCTGATGACTCAAACCAATCAAAACACACACCCAATCAATAA
CAGAAGCAAGATCCACAAGAAGAAGTGACGGCACCTCCATGTGAAGCAGA
CGCCATCAACTCTACCTACGCACACCCAACGTGCAGGCCGTGCAGTTGCA
TTACATTCAAATCATTATAATACCCGAGCCAAGGCCATGGCATGCTTGCA
AGATTGCCCCTTGACCATGCCTCTGTCTTTTCGCCGCCTCCATTTCTTAT
TCTACCA back to topprotein sequence of NO05G01460.3 >NO05G01460.3-protein ID=NO05G01460.3-protein|Name=NO05G01460.3|organism=Nannochloropsis oceanica|type=polypeptide|length=580bp
MVAWKRRLHGAVCEFFEVDKRHTTVATEVRAGITTFLTMSYILLVNPQIL
AQIGFPKSDVVVATAVGAGLASMVCGIFGNLPFGLAPGTGLSAYLSYGLV
LAGVLTRPQAMTVCFLSGFALGVSALAQVSTVIMRVIPRAVKLATVVGMG
LLIALIGMVSIRLVVPNEDTLVTLGDFSDYHIWLALVGLVVTGSMLFHQV
KGGVLAGIVLITVFVWCMDHDGPSEIFSIPHLEYGVTRNIDLTPASLSWE
MLPPLLAFLFVGLFDISGVMFGLSSLAKIMEEDGHIPGSIWAFLGSGLGT
LVAAMAGSSPIIIHVESAAGIREGGRTGLTAVVVGLLFFLSLFFAPLFGH
VPTAATAPILILVGAMMIGESQHIDWADMSQAIPAFLTSMMMPFTFSIPN
GILFGVGMSVTFFVTTGEFLSYLPRWMWGGGREGIEIGKGGGMVEEEEQA
RRLQTIDERSRLKAPPIPSPGKFHPGVGGGAREGDLAFGSPSASHQQHHT
LFDEQPMTRRFSLILPKEEADEQAARDMELSSSLTHAGGGGHHMLSHQPP
YHRHRSGSGSGSDRSSGGGAGEGAFAMQI* back to topmRNA from alignment at chr5:414919..418068+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G01460.3 ID=NO05G01460.3|Name=NO05G01460.3|organism=Nannochloropsis oceanica|type=mRNA|length=3150bp|location=Sequence derived from alignment at chr5:414919..418068+ (Nannochloropsis oceanica)
AACACCCACTTGACAGTAGATAGTTTTTGAATAGGGCTGTGCTATTAGAT
AAGACGCGCATTGTCTTCAAGGAGGGCCCCACTTCTGATTTCCTCAGCGC
GGTAGTTTCCAACCAGTCAAGATGGTGGCGTGGAAGCGGCGGCTGCATGG
TGCCGTCTGCGAGTTCTTCGAGGTAGACAAGCGGCATACCACCGTGGCCA
CCGAGGTCCGGGCGGGTATCACCACATTTTTGACTATGAGCTACATTCTG
CTTGTCAACCCTCAAATCTTGGCGCAGGTACGTTCGCAAGGGGTGGGGAG
GTCTGGAAAGAGTCATCTGGCGTTTGAGTATATATATGCCCCCTCTGGGC
CTCTCATCCGGCTGATGCACAAGCATGCTGACAACCACCGGTATTACCAT
TCCATGGATCGGCCGGGTCGTGTGGGCATGTGTATTATCGTGAAATCCGC
TGTTGCTGGTCCACGAGCGTAAGTGCTTGTCAGCTCAATCCTGTATTCCT
TCTTCATCACTCCACTTCCTCGAATATTTTTGAATCGGACGTCGATGTTC
GCGATCACATCCGTTCCGCTCTCTCCATCGTTCTCCAGACCTCTCTTGAC
CCTCATGTCGTCTCTTCTTTTTTTCAAAACCATCTTTAACAGATAGGCTT
CCCAAAATCCGACGTTGTGGTCGCCACCGCCGTGGGCGCCGGGCTCGCCA
GCATGGTCTGTGGGATCTTTGGCAACTTGCCTTTTGGTCTTGCGCCTGGC
ACGGGCTTGAGCGCGTACCTATCTTATGGCCTCGTCCTCGCTGGGGTGCT
CACTCGCCCGCAAGCGATGACGGTATGTTTTTTGTCGGGGTTTGCACTGG
GCGTATCAGCCTTGGCGCAGGTTAGCACGGTCATTATGAGGGTTATACCA
AGAGCAGTAAAACTCGCGACAGTCGTGGGGATGGGCCTATTGATTGCATT
AATTGGCATGGTGTCTATAAGGCTGGTGGTCCCGAATGAAGATACGTTGG
TGACGCTTGGGGATTTTTCGGACTACCATATATGGTTGGCGCTTGTGGGG
TTGGTGGTGACAGGTAAGAGGGGGGTAGAGGAATGAGGGAGGGAGCAAGG
GAGGAAGGCATACGGGATTTTTTTTTCCCACAATGCTTGGAGTTCACTTT
CTTTCGTCTTCTTCCCTTACTCTCCCTCCTTTTTCCAACAGGTTCAATGC
TCTTCCACCAAGTAAAGGGTGGGGTGCTCGCGGGTATCGTCCTCATTACC
GTTTTTGTCTGGTGTATGGATCATGACGGCCCCTCAGAGATCTTTTCCAT
CCCCCATCTGGAATACGGCGTCACGAGAAACATCGACTTGACGCCCGCTT
CCTTATCCTGGGAAATGCTCCCTCCATTGCTCGCGTTTTTATTTGTCGGT
TTATTTGACATCTCGGGAGTGATGTTCGGGCTGTCGTCTCTCGCAAAGAT
AATGGAGGAGGATGGACATATACCGGGTAGTATTTGGGCGTTCTTAGGGT
CGGGTTTAGGCACCTTGGTGGCAGCTATGGCCGGGAGTTCGCCCATCATC
ATCCACGTGGAAAGCGCGGCGGGGATCAGGGAAGGAGGAAGGACGGGATT
GACGGCTGTTGTTGTAGGATTATTGTTTTTTTTGAGTTTATTTTTCGCGC
CTTTATTTGGACACGTCCCGACGGCGGCGACAGCACCAATTTTGATTCTG
GTGGGGGCGATGATGATAGGAGAGAGTCAGCACATCGACTGGGCGGACAT
GAGTCAGGCGATCCCGGCGTTTTTGACGAGCATGATGATGCCCTTCACGT
TCTCGATCCCGAATGGAATTTTGTTCGGGGTGGGGATGAGCGTGACGTTT
TTTGTGACGACTGGCGAGTTCCTGAGTTATTTGCCCCGGTGGATGTGGGG
GGGGGGGAGGGAGGGAATTGAGATAGGAAAGGGTGGAGGGATGGTGGAAG
AAGAGGAGCAGGCAAGGAGGTTGCAGACAATTGATGAACGGAGTCGGTTA
AAGGCGCCGCCTATACCATCGCCGGGGAAATTCCATCCGGGGGTCGGAGG
AGGAGCAAGGGAAGGAGATCTTGCATTTGGATCGCCGTCCGCATCGCACC
AGCAGCATCATACTCTCTTCGATGAACAGCCAATGACAAGGAGGTTTTCC
TTGATTTTACCTAAGGAAGAGGCCGACGAGCAGGCTGCCAGGGATATGGA
GTTGTCGTCGTCGTTGACGCATGCGGGGGGAGGAGGGCACCATATGCTGA
GTCACCAGCCACCGTATCACCGGCATAGGAGTGGAAGTGGAAGCGGGAGC
GATCGAAGTTCAGGCGGAGGGGCGGGGGAGGGGGCATTTGCGATGCAGAT
ATAGGTGAGGAGAGAATGAAAGGACGGAAGGGTAGTGAAGATGAATACGA
TCATGTACGTATGTAGGGAGAGAGATGGAAGTTAACCAGAACGGAAACGA
AAAACGCTTGCGAGCGCCCCCCCTCAAAAGAAGATTAACGCCTAGTGTGC
AAGCTCCTTCAAAACTTTTAATCATTGACCCTCCTTCTCAACTGCGAAAG
AAAACAGAAGTTTGGAAGAAATGAAAAAGAATGGCAGGAGGGTAATGTGT
CTACCCCTTCCAGGGTTGAGGTGTATGTTAAATGGAGGAGATAAAGTGGA
AATAACCTCGCTGAGTTGGTATGTAAGCTTAATTTTTGCTCGAGCGGCAA
GCACATCTTAAGTCGTGAAATAGAGCTTCCCATCCAAAACGGTCAAGAAA
AGGACCGAAAATGAGCTTCGGAGACGGTGGGAGGTTGCCATTGCATATGA
TTACACTTTCGTGGACAATCTATTTCTTATTTCTTGCCTGCTGACACCAC
TTGGACTTAACGCAAGTCACCTTGTTGACTGCAATGTCTCTTGCCGCGCG
CTCTGATGACTCAAACCAATCAAAACACACACCCAATCAATAACAGAAGC
AAGATCCACAAGAAGAAGTGACGGCACCTCCATGTGAAGCAGACGCCATC
AACTCTACCTACGCACACCCAACGTGCAGGCCGTGCAGTTGCATTACATT
CAAATCATTATAATACCCGAGCCAAGGCCATGGCATGCTTGCAAGATTGC
CCCTTGACCATGCCTCTGTCTTTTCGCCGCCTCCATTTCTTATTCTACCA
back to topCoding sequence (CDS) from alignment at chr5:414919..418068+ >NO05G01460.3 ID=NO05G01460.3|Name=NO05G01460.3|organism=Nannochloropsis oceanica|type=CDS|length=1740bp|location=Sequence derived from alignment at chr5:414919..418068+ (Nannochloropsis oceanica)
ATGGTGGCGTGGAAGCGGCGGCTGCATGGTGCCGTCTGCGAGTTCTTCGA
GGTAGACAAGCGGCATACCACCGTGGCCACCGAGGTCCGGGCGGGTATCA
CCACATTTTTGACTATGAGCTACATTCTGCTTGTCAACCCTCAAATCTTG
GCGCAGATAGGCTTCCCAAAATCCGACGTTGTGGTCGCCACCGCCGTGGG
CGCCGGGCTCGCCAGCATGGTCTGTGGGATCTTTGGCAACTTGCCTTTTG
GTCTTGCGCCTGGCACGGGCTTGAGCGCGTACCTATCTTATGGCCTCGTC
CTCGCTGGGGTGCTCACTCGCCCGCAAGCGATGACGGTATGTTTTTTGTC
GGGGTTTGCACTGGGCGTATCAGCCTTGGCGCAGGTTAGCACGGTCATTA
TGAGGGTTATACCAAGAGCAGTAAAACTCGCGACAGTCGTGGGGATGGGC
CTATTGATTGCATTAATTGGCATGGTGTCTATAAGGCTGGTGGTCCCGAA
TGAAGATACGTTGGTGACGCTTGGGGATTTTTCGGACTACCATATATGGT
TGGCGCTTGTGGGGTTGGTGGTGACAGGTTCAATGCTCTTCCACCAAGTA
AAGGGTGGGGTGCTCGCGGGTATCGTCCTCATTACCGTTTTTGTCTGGTG
TATGGATCATGACGGCCCCTCAGAGATCTTTTCCATCCCCCATCTGGAAT
ACGGCGTCACGAGAAACATCGACTTGACGCCCGCTTCCTTATCCTGGGAA
ATGCTCCCTCCATTGCTCGCGTTTTTATTTGTCGGTTTATTTGACATCTC
GGGAGTGATGTTCGGGCTGTCGTCTCTCGCAAAGATAATGGAGGAGGATG
GACATATACCGGGTAGTATTTGGGCGTTCTTAGGGTCGGGTTTAGGCACC
TTGGTGGCAGCTATGGCCGGGAGTTCGCCCATCATCATCCACGTGGAAAG
CGCGGCGGGGATCAGGGAAGGAGGAAGGACGGGATTGACGGCTGTTGTTG
TAGGATTATTGTTTTTTTTGAGTTTATTTTTCGCGCCTTTATTTGGACAC
GTCCCGACGGCGGCGACAGCACCAATTTTGATTCTGGTGGGGGCGATGAT
GATAGGAGAGAGTCAGCACATCGACTGGGCGGACATGAGTCAGGCGATCC
CGGCGTTTTTGACGAGCATGATGATGCCCTTCACGTTCTCGATCCCGAAT
GGAATTTTGTTCGGGGTGGGGATGAGCGTGACGTTTTTTGTGACGACTGG
CGAGTTCCTGAGTTATTTGCCCCGGTGGATGTGGGGGGGGGGGAGGGAGG
GAATTGAGATAGGAAAGGGTGGAGGGATGGTGGAAGAAGAGGAGCAGGCA
AGGAGGTTGCAGACAATTGATGAACGGAGTCGGTTAAAGGCGCCGCCTAT
ACCATCGCCGGGGAAATTCCATCCGGGGGTCGGAGGAGGAGCAAGGGAAG
GAGATCTTGCATTTGGATCGCCGTCCGCATCGCACCAGCAGCATCATACT
CTCTTCGATGAACAGCCAATGACAAGGAGGTTTTCCTTGATTTTACCTAA
GGAAGAGGCCGACGAGCAGGCTGCCAGGGATATGGAGTTGTCGTCGTCGT
TGACGCATGCGGGGGGAGGAGGGCACCATATGCTGAGTCACCAGCCACCG
TATCACCGGCATAGGAGTGGAAGTGGAAGCGGGAGCGATCGAAGTTCAGG
CGGAGGGGCGGGGGAGGGGGCATTTGCGATGCAGATATAG back to top
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