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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr5 | genome | chr5:323251..324582 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G01090.1 vs.
Match: EWM28250.1 (endoplasmic reticulum-golgi intermediate compartment protein 3 [Nannochloropsis gaditana]) HSP 1 Score: 715.7 bits (1846), Expect = 8.900e-203 Identity = 354/443 (79.91%), Postives = 394/443 (88.94%), Query Frame = 0
Query: 1 MISPNISPKELTLYERLRRLDFHPKTKDDFKVRTAYGGATSVVALACMVCLFLTELKYSMNKEIVDHMYVNSSRDTRLLFNFNMTFPSVSCQLLSADAMDPLGNKQEGVESHVFKTRLDAAGNPLSAKTWHKLGDTFTDVDVLAKHEEDSKAQFVQGEEEMEQWVEVDEDEDGEEREVEDEDGQKVWRKMKKVIGKRRKCGNCYGAGEEGECCNTCYSVKEAYDRRGWAFMGLNVEQCQQENLKNPLGEEGADEGCNIHGSLLLTQESGNVHFAPGEQLRHSGALNVADLVMFTFLKFNISHEIHHMSLGEEFPGFKSPLSNQVRSVADGYGMYQYYLKVVPTVYKHLNKASTVSNQYAVSEHIRHINPGSNRGLPGVWFFYDTSPVHVEFEERRRGLLPFLTSVCAIVGGVFSVFGVVDGVVHNLIQRGVGGGMKKGGAPGS 444
MISPNISPK+LTLYERLRRLD+HPKTKDDFKVRTAYGGATSVVALACM+ LF TELKYSM KEIVDHMYVNSSRDTRLLFNFN+TFPSVSC LLSADA+DPLGNKQEGVESHVFKTRLD+ GNP++AKTWHKLGDTFT+ D+L KHEEDS+AQ EEE EQ ++ E+ DG++ EDG+ R + KRRKCG+CYGAGE G+CCNTC VK+AYD +GWAF+GLNVEQC+QENL+ G +GA+EGCNIHGSLLLT +SGNVHFAPGEQLR SGALNVADLV FTFL+FN+SHEIHH+SLGEEFPGF+SPLSNQ RSVADGYGMYQYYLKVVPT+YKHL++ TVSNQYAVSEHIRHINPGSNRGLPGVWFFYDTSPVHVEF+ERR+GLLPFLTSVCAIVGGVFSVFGVVDGVVHNL++ G+ G K GGAPGS
Sbjct: 1 MISPNISPKDLTLYERLRRLDYHPKTKDDFKVRTAYGGATSVVALACMIFLFFTELKYSMEKEIVDHMYVNSSRDTRLLFNFNLTFPSVSCSLLSADALDPLGNKQEGVESHVFKTRLDSMGNPIAAKTWHKLGDTFTEEDLLLKHEEDSRAQL---EEEEEQEEKLGEEGDGQQ---VGEDGKPRGRNL-----KRRKCGDCYGAGEPGQCCNTCAEVKQAYDSKGWAFIGLNVEQCKQENLQVSFG-DGAEEGCNIHGSLLLTHDSGNVHFAPGEQLRQSGALNVADLVTFTFLQFNVSHEIHHLSLGEEFPGFRSPLSNQKRSVADGYGMYQYYLKVVPTIYKHLSQPPTVSNQYAVSEHIRHINPGSNRGLPGVWFFYDTSPVHVEFQERRKGLLPFLTSVCAIVGGVFSVFGVVDGVVHNLMKNGLPTG-KMGGAPGS 430
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G01090.1 ID=NO05G01090.1|Name=NO05G01090.1|organism=Nannochloropsis oceanica|type=mRNA|length=1332bp ATGATCTCGCCCAACATCTCACCCAAGGAATTGACGCTGTACGAGCGATT GCGGCGACTAGACTTCCACCCCAAGACGAAGGATGATTTCAAGGTCCGCA CGGCTTATGGCGGGGCGACGTCCGTCGTGGCCTTGGCCTGCATGGTCTGC TTGTTTTTAACCGAGCTCAAGTACTCGATGAATAAGGAGATTGTCGACCA CATGTATGTTAATTCCTCGCGGGACACCCGACTGCTATTCAATTTCAACA TGACCTTTCCCTCGGTATCGTGTCAGTTGTTGAGCGCCGATGCGATGGAC CCGTTGGGGAATAAACAGGAGGGGGTGGAGAGCCATGTGTTCAAGACGCG ATTAGATGCGGCAGGCAATCCACTCTCGGCAAAAACGTGGCATAAGCTGG GGGATACCTTTACGGATGTGGATGTGTTGGCGAAGCACGAGGAGGACAGT AAAGCGCAGTTTGTGCAGGGGGAGGAAGAGATGGAGCAATGGGTGGAAGT AGACGAGGACGAGGATGGAGAGGAGAGGGAGGTAGAAGATGAAGACGGGC AAAAAGTGTGGCGGAAGATGAAAAAGGTGATTGGGAAGCGACGGAAGTGT GGGAACTGCTACGGGGCCGGCGAGGAGGGAGAGTGCTGCAACACTTGTTA CAGCGTCAAGGAGGCGTACGACCGAAGGGGCTGGGCGTTCATGGGCCTGA ATGTCGAGCAATGCCAGCAAGAAAACCTGAAGAATCCTCTGGGAGAAGAA GGGGCAGACGAAGGCTGCAACATCCATGGCTCGTTGCTGTTGACACAGGA GAGCGGGAACGTCCACTTTGCCCCGGGCGAGCAGCTCCGGCATTCGGGCG CCTTAAATGTGGCTGATCTGGTGATGTTCACGTTCCTTAAATTCAACATC TCACACGAAATCCACCACATGTCGTTGGGGGAGGAATTCCCAGGTTTTAA ATCGCCGCTGAGTAATCAGGTGCGGAGCGTGGCGGATGGGTATGGAATGT ATCAGTATTACCTGAAGGTAGTGCCGACCGTGTATAAGCACTTGAACAAG GCGTCCACAGTCTCGAATCAATACGCGGTCTCCGAGCACATTCGTCATAT CAACCCTGGGAGTAATCGGGGGCTACCGGGCGTGTGGTTCTTTTATGACA CGTCTCCGGTGCATGTTGAGTTTGAGGAGAGGAGGAGAGGACTGTTACCG TTCTTGACGAGTGTGTGCGCGATTGTTGGGGGCGTATTCTCAGTCTTCGG GGTAGTCGATGGCGTAGTGCATAACTTGATTCAAAGGGGTGTAGGAGGCG GGATGAAGAAAGGGGGGGCGCCTGGGAGTTAG back to topprotein sequence of NO05G01090.1 >NO05G01090.1-protein ID=NO05G01090.1-protein|Name=NO05G01090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=444bp MISPNISPKELTLYERLRRLDFHPKTKDDFKVRTAYGGATSVVALACMVC LFLTELKYSMNKEIVDHMYVNSSRDTRLLFNFNMTFPSVSCQLLSADAMD PLGNKQEGVESHVFKTRLDAAGNPLSAKTWHKLGDTFTDVDVLAKHEEDS KAQFVQGEEEMEQWVEVDEDEDGEEREVEDEDGQKVWRKMKKVIGKRRKC GNCYGAGEEGECCNTCYSVKEAYDRRGWAFMGLNVEQCQQENLKNPLGEE GADEGCNIHGSLLLTQESGNVHFAPGEQLRHSGALNVADLVMFTFLKFNI SHEIHHMSLGEEFPGFKSPLSNQVRSVADGYGMYQYYLKVVPTVYKHLNK ASTVSNQYAVSEHIRHINPGSNRGLPGVWFFYDTSPVHVEFEERRRGLLP FLTSVCAIVGGVFSVFGVVDGVVHNLIQRGVGGGMKKGGAPGS* back to topmRNA from alignment at chr5:323251..324582- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G01090.1 ID=NO05G01090.1|Name=NO05G01090.1|organism=Nannochloropsis oceanica|type=mRNA|length=1332bp|location=Sequence derived from alignment at chr5:323251..324582- (Nannochloropsis oceanica) ATGATCTCGCCCAACATCTCACCCAAGGAATTGACGCTGTACGAGCGATT
GCGGCGACTAGACTTCCACCCCAAGACGAAGGATGATTTCAAGGTCCGCA
CGGCTTATGGCGGGGCGACGTCCGTCGTGGCCTTGGCCTGCATGGTCTGC
TTGTTTTTAACCGAGCTCAAGTACTCGATGAATAAGGAGATTGTCGACCA
CATGTATGTTAATTCCTCGCGGGACACCCGACTGCTATTCAATTTCAACA
TGACCTTTCCCTCGGTATCGTGTCAGTTGTTGAGCGCCGATGCGATGGAC
CCGTTGGGGAATAAACAGGAGGGGGTGGAGAGCCATGTGTTCAAGACGCG
ATTAGATGCGGCAGGCAATCCACTCTCGGCAAAAACGTGGCATAAGCTGG
GGGATACCTTTACGGATGTGGATGTGTTGGCGAAGCACGAGGAGGACAGT
AAAGCGCAGTTTGTGCAGGGGGAGGAAGAGATGGAGCAATGGGTGGAAGT
AGACGAGGACGAGGATGGAGAGGAGAGGGAGGTAGAAGATGAAGACGGGC
AAAAAGTGTGGCGGAAGATGAAAAAGGTGATTGGGAAGCGACGGAAGTGT
GGGAACTGCTACGGGGCCGGCGAGGAGGGAGAGTGCTGCAACACTTGTTA
CAGCGTCAAGGAGGCGTACGACCGAAGGGGCTGGGCGTTCATGGGCCTGA
ATGTCGAGCAATGCCAGCAAGAAAACCTGAAGAATCCTCTGGGAGAAGAA
GGGGCAGACGAAGGCTGCAACATCCATGGCTCGTTGCTGTTGACACAGGA
GAGCGGGAACGTCCACTTTGCCCCGGGCGAGCAGCTCCGGCATTCGGGCG
CCTTAAATGTGGCTGATCTGGTGATGTTCACGTTCCTTAAATTCAACATC
TCACACGAAATCCACCACATGTCGTTGGGGGAGGAATTCCCAGGTTTTAA
ATCGCCGCTGAGTAATCAGGTGCGGAGCGTGGCGGATGGGTATGGAATGT
ATCAGTATTACCTGAAGGTAGTGCCGACCGTGTATAAGCACTTGAACAAG
GCGTCCACAGTCTCGAATCAATACGCGGTCTCCGAGCACATTCGTCATAT
CAACCCTGGGAGTAATCGGGGGCTACCGGGCGTGTGGTTCTTTTATGACA
CGTCTCCGGTGCATGTTGAGTTTGAGGAGAGGAGGAGAGGACTGTTACCG
TTCTTGACGAGTGTGTGCGCGATTGTTGGGGGCGTATTCTCAGTCTTCGG
GGTAGTCGATGGCGTAGTGCATAACTTGATTCAAAGGGGTGTAGGAGGCG
GGATGAAGAAAGGGGGGGCGCCTGGGAGTTAG back to topCoding sequence (CDS) from alignment at chr5:323251..324582- >NO05G01090.1 ID=NO05G01090.1|Name=NO05G01090.1|organism=Nannochloropsis oceanica|type=CDS|length=1332bp|location=Sequence derived from alignment at chr5:323251..324582- (Nannochloropsis oceanica) ATGATCTCGCCCAACATCTCACCCAAGGAATTGACGCTGTACGAGCGATT GCGGCGACTAGACTTCCACCCCAAGACGAAGGATGATTTCAAGGTCCGCA CGGCTTATGGCGGGGCGACGTCCGTCGTGGCCTTGGCCTGCATGGTCTGC TTGTTTTTAACCGAGCTCAAGTACTCGATGAATAAGGAGATTGTCGACCA CATGTATGTTAATTCCTCGCGGGACACCCGACTGCTATTCAATTTCAACA TGACCTTTCCCTCGGTATCGTGTCAGTTGTTGAGCGCCGATGCGATGGAC CCGTTGGGGAATAAACAGGAGGGGGTGGAGAGCCATGTGTTCAAGACGCG ATTAGATGCGGCAGGCAATCCACTCTCGGCAAAAACGTGGCATAAGCTGG GGGATACCTTTACGGATGTGGATGTGTTGGCGAAGCACGAGGAGGACAGT AAAGCGCAGTTTGTGCAGGGGGAGGAAGAGATGGAGCAATGGGTGGAAGT AGACGAGGACGAGGATGGAGAGGAGAGGGAGGTAGAAGATGAAGACGGGC AAAAAGTGTGGCGGAAGATGAAAAAGGTGATTGGGAAGCGACGGAAGTGT GGGAACTGCTACGGGGCCGGCGAGGAGGGAGAGTGCTGCAACACTTGTTA CAGCGTCAAGGAGGCGTACGACCGAAGGGGCTGGGCGTTCATGGGCCTGA ATGTCGAGCAATGCCAGCAAGAAAACCTGAAGAATCCTCTGGGAGAAGAA GGGGCAGACGAAGGCTGCAACATCCATGGCTCGTTGCTGTTGACACAGGA GAGCGGGAACGTCCACTTTGCCCCGGGCGAGCAGCTCCGGCATTCGGGCG CCTTAAATGTGGCTGATCTGGTGATGTTCACGTTCCTTAAATTCAACATC TCACACGAAATCCACCACATGTCGTTGGGGGAGGAATTCCCAGGTTTTAA ATCGCCGCTGAGTAATCAGGTGCGGAGCGTGGCGGATGGGTATGGAATGT ATCAGTATTACCTGAAGGTAGTGCCGACCGTGTATAAGCACTTGAACAAG GCGTCCACAGTCTCGAATCAATACGCGGTCTCCGAGCACATTCGTCATAT CAACCCTGGGAGTAATCGGGGGCTACCGGGCGTGTGGTTCTTTTATGACA CGTCTCCGGTGCATGTTGAGTTTGAGGAGAGGAGGAGAGGACTGTTACCG TTCTTGACGAGTGTGTGCGCGATTGTTGGGGGCGTATTCTCAGTCTTCGG GGTAGTCGATGGCGTAGTGCATAACTTGATTCAAAGGGGTGTAGGAGGCG GGATGAAGAAAGGGGGGGCGCCTGGGAGTTAG back to top
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