NO05G01070.1, NO05G01070.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO05G01070.1
Unique Name	NO05G01070.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1934
Alignment location	chr5:316983..319477 -

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr5	genome	chr5:316983..319477 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO05G01070.1 vs.
Match: EWM28151.1 (heat shock protein [Nannochloropsis gaditana])

HSP 1 Score: 775.4 bits (2001), Expect = 1.200e-220
Identity = 409/534 (76.59%), Postives = 445/534 (83.33%), Query Frame = 0

Query:    1 MSFMFRCCCRPFLKGGDDGSRPYYDQLALDKECSTEDIKRAYKKKSLELHPDKLAQRGQVLTPEDQARFQRVKEAYEVLVDPKRRDLYDEFGETGLKLIEDPQSMDPQTAFVNFMRSSSYDRCAIFMTIVGVTLFVLMWPVLLCLQTDTDIEIPWTAIWTPLWVLDALCLFVLWFLVFTGNRRPAEGLEEEWRDDLPARVLNAVQLSCNVLFQIFLTLKLDDVIQDWDWSHVFAPWLAWEGIQLFRNLTITSTGGGSTNFATSTEEGVLLRAMAVRQAMLGLQHGVLRIVFCALAILKLDGKIHVTWWVVFVPLWLFFVTQILGICVEYALAKRLQENLLVAAVAAAEERGAAV-DPETGEVELGPEETMIQEQAELMASRASMMGCQAAVVIMMALLGVARLEGAHYSVFVIFLPVFVIVGCFTCSLGCAVCCLREPEEGMGVMGRDGEHRPLNPAAQANSSAGATS----TTVAMGAV---GEGHKLGGNAVSPRTARTTALGGEGKGAEGGGGGGGAGGGATSYQPPAPLP 527
            MSFMFRCCCRPFLKGGDDGSRPYYDQL + +ECSTEDIKRAYKKKSLELHPDKLAQRGQVLT EDQ+RFQRVKEAYEVLVDPKRRD+YDEFGETGLKLIEDPQSMDPQTAF NFMRSSSYDRCAIF T+VGVT FVL+WPVLLCLQ D  I IPWTAIWTPLWV DA  LF+LWF+VF G R PAEGLEEEWRDDLPARVLNAVQLSCNVLFQ+FLTLKLD V+  WDWS +FAPWLAWEGIQLFRNLT+TSTGGG T FATS EEGVLLRAMAVRQAMLGLQHGVLRIVFCALAIL+LD KI VTWWVVF PLWLFF TQ +GICVEYALAKRLQE L+ AA A A ERG +V DPETGEVELGPEE MIQEQ ELMASRASM+ CQAA+V++MALLGVAR+EGAH+SVF++FLPVFVIVGCFTCSLGCAVCC+R+ +   G+M  DGE+RPLNP A    +A ATS     +VA   V   GEGH   G+  S +         EG+ +    G      G T Y+PPAPLP
Sbjct:    1 MSFMFRCCCRPFLKGGDDGSRPYYDQLGVHRECSTEDIKRAYKKKSLELHPDKLAQRGQVLTVEDQSRFQRVKEAYEVLVDPKRRDMYDEFGETGLKLIEDPQSMDPQTAFSNFMRSSSYDRCAIFSTLVGVTAFVLLWPVLLCLQADKTIHIPWTAIWTPLWVCDAFLLFILWFMVFLGRRSPAEGLEEEWRDDLPARVLNAVQLSCNVLFQVFLTLKLDKVV-PWDWSRIFAPWLAWEGIQLFRNLTVTSTGGGPTPFATSAEEGVLLRAMAVRQAMLGLQHGVLRIVFCALAILRLDEKIRVTWWVVFTPLWLFFATQFVGICVEYALAKRLQEGLIAAATATAAERGGSVMDPETGEVELGPEEAMIQEQTELMASRASMLACQAAIVLVMALLGVARIEGAHFSVFLVFLPVFVIVGCFTCSLGCAVCCVRDAD---GIM--DGENRPLNPGAGGQGTASATSIGTNPSVAASMVRDSGEGHVEAGSGGSQQDL------PEGRSSSHKTGSKVRKEGGTPYRPPAPLP 522

The following BLAST results are available for this feature:

BLAST of NO05G01070.1 vs.

BLAST of NO05G01070.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM28151.1	1.200e-220	76.59	heat shock protein [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO05G01070	NO05G01070	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO05G01070.1	NO05G01070.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO05G01070.1.cds1	NO05G01070.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G01070.1.cds2	NO05G01070.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G01070.1.cds3	NO05G01070.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr5:316983..319477-
coding sequence from alignment at chr5:316983..319477-

mRNA sequence

>NO05G01070.1 ID=NO05G01070.1|Name=NO05G01070.1|organism=Nannochloropsis oceanica|type=mRNA|length=1934bp
ACAGGAGTGGTTGTGGTGCGGCAAGCATACGCAGCGGCAACAAGCGGGCA
GGGTCCAGCCTATACCTTGCGTCAACGACCACGACCGCGCTCTCCTCCTC
CTCCGCCTCCTTCTCCTCTTGAAGCTTAAGACAGCAGCGATGTCATTCAT
GTTTCGATGCTGCTGCCGTCCCTTCCTGAAGGGGGGGGACGACGGGAGCA
GGCCGTACTACGATCAACTCGCGCTCGACAAGGAATGCTCCACTGAAGAC
ATCAAACGCGCCTACAAAAAGAAATCCCTCGAACTCCACCCGGACAAGCT
AGCACAACGCGGGCAAGTCCTCACCCCCGAAGACCAAGCTCGTTTTCAAC
GCGTCAAGGAAGCGTATGAGGTTCTCGTGGATCCGAAGCGACGGGACCTC
TACGATGAATTCGGAGAGACTGGCTTGAAGTTAATTGAGGACCCCCAGTC
GATGGACCCCCAGACAGCCTTTGTAAATTTCATGCGGTCCTCCAGTTACG
ACAGATGTGCGATTTTCATGACGATTGTGGGAGTGACGCTTTTTGTGCTC
ATGTGGCCAGTCTTGTTGTGTTTGCAGACCGACACGGACATAGAAATCCC
CTGGACAGCTATCTGGACGCCTCTATGGGTGCTGGATGCCTTGTGCCTTT
TCGTCCTGTGGTTCTTGGTCTTCACCGGTAACCGCCGACCGGCCGAAGGG
CTGGAGGAGGAATGGAGGGACGACCTCCCCGCACGGGTGCTGAACGCCGT
TCAATTGTCGTGCAATGTATTATTTCAGATTTTTCTAACGTTGAAACTAG
ACGACGTGATCCAAGACTGGGATTGGAGTCATGTGTTCGCCCCCTGGTTG
GCTTGGGAAGGCATCCAGTTGTTCCGCAACCTGACCATCACCTCCACGGG
CGGGGGTTCTACTAATTTTGCCACGTCCACAGAGGAAGGGGTGTTGTTGC
GTGCGATGGCTGTGAGACAGGCGATGTTGGGTTTGCAGCACGGAGTTCTG
CGCATTGTGTTCTGTGCTCTGGCGATTTTGAAATTGGATGGAAAGATCCA
TGTCACTTGGTGGGTAGTCTTTGTCCCCCTATGGCTATTCTTCGTGACGC
AAATTTTGGGGATCTGCGTGGAGTATGCCTTGGCGAAACGATTGCAGGAA
AATTTATTGGTGGCTGCTGTGGCGGCTGCGGAGGAGCGAGGGGCGGCGGT
GGACCCTGAAACGGGGGAGGTGGAGTTGGGGCCGGAGGAAACGATGATCC
AGGAACAGGCGGAGTTGATGGCGAGTCGGGCGAGTATGATGGGATGCCAG
GCGGCGGTGGTGATAATGATGGCACTGCTCGGAGTGGCAAGGCTTGAGGG
GGCACACTACTCCGTGTTTGTGATTTTCTTGCCGGTGTTTGTGATTGTGG
GCTGCTTCACTTGCAGCTTGGGGTGTGCCGTTTGTTGTTTGCGGGAGCCG
GAGGAGGGGATGGGTGTGATGGGAAGGGATGGAGAGCATCGACCTTTGAA
TCCGGCTGCACAAGCAAATAGTTCTGCGGGGGCGACCAGCACGACGGTGG
CAATGGGGGCGGTAGGGGAAGGTCACAAATTGGGGGGGAATGCGGTGTCG
CCGCGGACGGCACGGACCACAGCGCTGGGAGGAGAGGGAAAGGGGGCAGA
AGGAGGTGGAGGAGGTGGAGGAGCTGGAGGAGGAGCGACATCATACCAGC
CACCAGCACCACTGCCGGTCGTGCTTACGAAACCGACCCCTCCCAGACCC
GGCAATAGCTTTGCGAGTACCGGGGAGGAGATTGATGGGATCGATTAGTA
CAATAAAGGGGGAGGAATAGTAGTGAGAGAGGATTCGAAACAGACTGAAA
GAGAAATCTCACAAAGCATGGCCTAAGAAAAAAAGAACGAAGACCGAAGG
AGCGAAGAAGACTGCAAGCCAAACAAAAAAAAGG

protein sequence of NO05G01070.1

>NO05G01070.1-protein ID=NO05G01070.1-protein|Name=NO05G01070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=553bp
MSFMFRCCCRPFLKGGDDGSRPYYDQLALDKECSTEDIKRAYKKKSLELH
PDKLAQRGQVLTPEDQARFQRVKEAYEVLVDPKRRDLYDEFGETGLKLIE
DPQSMDPQTAFVNFMRSSSYDRCAIFMTIVGVTLFVLMWPVLLCLQTDTD
IEIPWTAIWTPLWVLDALCLFVLWFLVFTGNRRPAEGLEEEWRDDLPARV
LNAVQLSCNVLFQIFLTLKLDDVIQDWDWSHVFAPWLAWEGIQLFRNLTI
TSTGGGSTNFATSTEEGVLLRAMAVRQAMLGLQHGVLRIVFCALAILKLD
GKIHVTWWVVFVPLWLFFVTQILGICVEYALAKRLQENLLVAAVAAAEER
GAAVDPETGEVELGPEETMIQEQAELMASRASMMGCQAAVVIMMALLGVA
RLEGAHYSVFVIFLPVFVIVGCFTCSLGCAVCCLREPEEGMGVMGRDGEH
RPLNPAAQANSSAGATSTTVAMGAVGEGHKLGGNAVSPRTARTTALGGEG
KGAEGGGGGGGAGGGATSYQPPAPLPVVLTKPTPPRPGNSFASTGEEIDG
ID*

mRNA from alignment at chr5:316983..319477-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO05G01070.1 ID=NO05G01070.1|Name=NO05G01070.1|organism=Nannochloropsis oceanica|type=mRNA|length=2495bp|location=Sequence derived from alignment at chr5:316983..319477- (Nannochloropsis oceanica)
ACAGGAGTGGTTGTGGTGCGGCAAGCATACGCAGCGGCAACAAGCGGGCA
GGGTCCAGCCTATACCTTGCGTCAACGACCACGACCGCGCTCTCCTCCTC
CTCCGCCTCCTTCTCCTCTTGAAGCTTAAGACAGCAGCGATGTCATTCAT
GTTTCGATGCTGCTGCCGTCCCTTCCTGAAGGGGGGGGACGACGGGAGCA
GGCCGTACTACGATCAACTCGCGCTCGACAAGGTACGTGTCCCTCCACAG
CACAGAGGCAACGCAGGTCCTTCACTGTGATCCTTTCACGCCCCCACATG
ATTCTGGGCCTCGTTATCATGAGGTTGGCAAACGTGTAGAAGCGGAGAAA
GCGAAGGCGTGCAGGCCCTGTGAAGCTGTATCACCTCTAGGTGCATTCAA
CTAGTAGGGGACAATCTTCCGCTCTGCGTCTCCCTCTTCCAACTTTGAGT
GTCATGTCTGAGCATCTGTATCATCGCTCTTGTGACGACTTTACTATCCT
CCCTTTTTTACCAAATTACGCTCCGCTTTTTCCTCGTTCCCTCGCTTCCT
CACTCTGCCTTTATCAGGAATGCTCCACTGAAGACATCAAACGCGCCTAC
AAAAAGAAATCCCTCGAACTCCACCCGGACAAGCTAGCACAACGCGGGCA
AGTCCTCACCCCCGAAGACCAAGCTCGTTTTCAACGCGTCAAGGAAGCGT
ATGAGGTTCTCGTGGATCCGAAGCGACGGGACCTCTACGATGAATTCGGA
GAGACTGGCTTGAAGTTAATTGAGGACCCCCAGTCGATGGACCCCCAGAC
AGCCTTTGTAAATTTCATGCGGTCCTCCAGTTACGACAGATGTGCGATTT
TCATGACGATTGTGGGAGTGACGCTTTTTGTGCTCATGTGGCCAGTCTTG
TTGTGTTTGCAGGTATGTGCTTGTGGGGGTTTATCCTTTTCTGGTCCCTT
TCTGGGGATGAATCGGAGTTTAAGTTGTATTTATATTGGTGTATGTCCCT
CTGTTTGAAATGCCTGTGATTTGCCGCGCGAAGAGCTCGTGCTATATTTG
TTGGCGTCCTGGGCGGTACGACCTATGCCACTCGTTTACAACCTCAAGAC
CCTTCCCTCCCTTGTCCTTCCTCCCTCCCTCCTTCAAGACCGACACGGAC
ATAGAAATCCCCTGGACAGCTATCTGGACGCCTCTATGGGTGCTGGATGC
CTTGTGCCTTTTCGTCCTGTGGTTCTTGGTCTTCACCGGTAACCGCCGAC
CGGCCGAAGGGCTGGAGGAGGAATGGAGGGACGACCTCCCCGCACGGGTG
CTGAACGCCGTTCAATTGTCGTGCAATGTATTATTTCAGATTTTTCTAAC
GTTGAAACTAGACGACGTGATCCAAGACTGGGATTGGAGTCATGTGTTCG
CCCCCTGGTTGGCTTGGGAAGGCATCCAGTTGTTCCGCAACCTGACCATC
ACCTCCACGGGCGGGGGTTCTACTAATTTTGCCACGTCCACAGAGGAAGG
GGTGTTGTTGCGTGCGATGGCTGTGAGACAGGCGATGTTGGGTTTGCAGC
ACGGAGTTCTGCGCATTGTGTTCTGTGCTCTGGCGATTTTGAAATTGGAT
GGAAAGATCCATGTCACTTGGTGGGTAGTCTTTGTCCCCCTATGGCTATT
CTTCGTGACGCAAATTTTGGGGATCTGCGTGGAGTATGCCTTGGCGAAAC
GATTGCAGGAAAATTTATTGGTGGCTGCTGTGGCGGCTGCGGAGGAGCGA
GGGGCGGCGGTGGACCCTGAAACGGGGGAGGTGGAGTTGGGGCCGGAGGA
AACGATGATCCAGGAACAGGCGGAGTTGATGGCGAGTCGGGCGAGTATGA
TGGGATGCCAGGCGGCGGTGGTGATAATGATGGCACTGCTCGGAGTGGCA
AGGCTTGAGGGGGCACACTACTCCGTGTTTGTGATTTTCTTGCCGGTGTT
TGTGATTGTGGGCTGCTTCACTTGCAGCTTGGGGTGTGCCGTTTGTTGTT
TGCGGGAGCCGGAGGAGGGGATGGGTGTGATGGGAAGGGATGGAGAGCAT
CGACCTTTGAATCCGGCTGCACAAGCAAATAGTTCTGCGGGGGCGACCAG
CACGACGGTGGCAATGGGGGCGGTAGGGGAAGGTCACAAATTGGGGGGGA
ATGCGGTGTCGCCGCGGACGGCACGGACCACAGCGCTGGGAGGAGAGGGA
AAGGGGGCAGAAGGAGGTGGAGGAGGTGGAGGAGCTGGAGGAGGAGCGAC
ATCATACCAGCCACCAGCACCACTGCCGGTCGTGCTTACGAAACCGACCC
CTCCCAGACCCGGCAATAGCTTTGCGAGTACCGGGGAGGAGATTGATGGG
ATCGATTAGTACAATAAAGGGGGAGGAATAGTAGTGAGAGAGGATTCGAA
ACAGACTGAAAGAGAAATCTCACAAAGCATGGCCTAAGAAAAAAAGAACG
AAGACCGAAGGAGCGAAGAAGACTGCAAGCCAAACAAAAAAAAGG

Coding sequence (CDS) from alignment at chr5:316983..319477-

>NO05G01070.1 ID=NO05G01070.1|Name=NO05G01070.1|organism=Nannochloropsis oceanica|type=CDS|length=1659bp|location=Sequence derived from alignment at chr5:316983..319477- (Nannochloropsis oceanica)
ATGTCATTCATGTTTCGATGCTGCTGCCGTCCCTTCCTGAAGGGGGGGGA
CGACGGGAGCAGGCCGTACTACGATCAACTCGCGCTCGACAAGGAATGCT
CCACTGAAGACATCAAACGCGCCTACAAAAAGAAATCCCTCGAACTCCAC
CCGGACAAGCTAGCACAACGCGGGCAAGTCCTCACCCCCGAAGACCAAGC
TCGTTTTCAACGCGTCAAGGAAGCGTATGAGGTTCTCGTGGATCCGAAGC
GACGGGACCTCTACGATGAATTCGGAGAGACTGGCTTGAAGTTAATTGAG
GACCCCCAGTCGATGGACCCCCAGACAGCCTTTGTAAATTTCATGCGGTC
CTCCAGTTACGACAGATGTGCGATTTTCATGACGATTGTGGGAGTGACGC
TTTTTGTGCTCATGTGGCCAGTCTTGTTGTGTTTGCAGACCGACACGGAC
ATAGAAATCCCCTGGACAGCTATCTGGACGCCTCTATGGGTGCTGGATGC
CTTGTGCCTTTTCGTCCTGTGGTTCTTGGTCTTCACCGGTAACCGCCGAC
CGGCCGAAGGGCTGGAGGAGGAATGGAGGGACGACCTCCCCGCACGGGTG
CTGAACGCCGTTCAATTGTCGTGCAATGTATTATTTCAGATTTTTCTAAC
GTTGAAACTAGACGACGTGATCCAAGACTGGGATTGGAGTCATGTGTTCG
CCCCCTGGTTGGCTTGGGAAGGCATCCAGTTGTTCCGCAACCTGACCATC
ACCTCCACGGGCGGGGGTTCTACTAATTTTGCCACGTCCACAGAGGAAGG
GGTGTTGTTGCGTGCGATGGCTGTGAGACAGGCGATGTTGGGTTTGCAGC
ACGGAGTTCTGCGCATTGTGTTCTGTGCTCTGGCGATTTTGAAATTGGAT
GGAAAGATCCATGTCACTTGGTGGGTAGTCTTTGTCCCCCTATGGCTATT
CTTCGTGACGCAAATTTTGGGGATCTGCGTGGAGTATGCCTTGGCGAAAC
GATTGCAGGAAAATTTATTGGTGGCTGCTGTGGCGGCTGCGGAGGAGCGA
GGGGCGGCGGTGGACCCTGAAACGGGGGAGGTGGAGTTGGGGCCGGAGGA
AACGATGATCCAGGAACAGGCGGAGTTGATGGCGAGTCGGGCGAGTATGA
TGGGATGCCAGGCGGCGGTGGTGATAATGATGGCACTGCTCGGAGTGGCA
AGGCTTGAGGGGGCACACTACTCCGTGTTTGTGATTTTCTTGCCGGTGTT
TGTGATTGTGGGCTGCTTCACTTGCAGCTTGGGGTGTGCCGTTTGTTGTT
TGCGGGAGCCGGAGGAGGGGATGGGTGTGATGGGAAGGGATGGAGAGCAT
CGACCTTTGAATCCGGCTGCACAAGCAAATAGTTCTGCGGGGGCGACCAG
CACGACGGTGGCAATGGGGGCGGTAGGGGAAGGTCACAAATTGGGGGGGA
ATGCGGTGTCGCCGCGGACGGCACGGACCACAGCGCTGGGAGGAGAGGGA
AAGGGGGCAGAAGGAGGTGGAGGAGGTGGAGGAGCTGGAGGAGGAGCGAC
ATCATACCAGCCACCAGCACCACTGCCGGTCGTGCTTACGAAACCGACCC
CTCCCAGACCCGGCAATAGCTTTGCGAGTACCGGGGAGGAGATTGATGGG
ATCGATTAG

Synonyms

Publications