NO05G00940.1, NO05G00940.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G00940.1
Unique NameNO05G00940.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1302
Alignment locationchr5:287400..289291 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:287400..289291 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G00940.1 vs.
Match: EWM28188.1 (soul heme-binding protein [Nannochloropsis gaditana]; EWM28189.1 soul heme-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 535.0 bits (1377), Expect = 2.100e-148
Identity = 303/430 (70.47%), Postives = 337/430 (78.37%), Query Frame = 0 
Query:    4 TAAAASGLLLLCRVDQGSAFLLPSASLAHSCRATASSLMRMEGTKAKEALSWQESLELLISPTTTLAQRQVLFQDVVSRAPEIRSDVEEAISEGSIDGLLTDGVKAVRRQLKEDIIPQLASEPQQAAKILLEELPKLAQRSYEGLPKNQKDLKQFAAALREVSSSLPTEARNVFLRTPEGLETPSFRVVYDGPGYDIREYDSYTVAYTEMGERALGSSSDSTGPVLGSPAMTGGAFNTLAGYIFGANEANINMAMTTPVEIRKEAHHRGGGEAYSMRFIVSSSYTTETAPRPVDAKVRLTTTPPGERLAAREFAGFATEGEVQRQLIALLSALDRDGVPVVDPASYRIFQYNPPYTLPWLRRNEILVEVKGNVPSPGSSSSASSVADVAKSAATVMDETVTDQWAVRGDMELGETGNNAEDKDDVSPSDY 434
            T     GLLL   +D+  AF LPS       R   S+++R+E TK+K  LSWQESLELL+SPTT +AQRQVLFQDVVSRAPEIR DVEEAI EGS+DGLLTDG+KAVRRQL EDIIPQLASEP+QAAKILLEE+PKLAQRSYE LPKN K+L   A  LREVS++LP+EARNVFLRTPEGLETPSF+V+++G GY+IREYD YTVAYTEMG     + S S GPVLGSP MTGGAFNTLAGYIFGANEA  NMAMTTPVEIRK+A HRG GEAYSMRFI++S YTTETAPRP+D+KVRLTTT   ERLAAREFAGFATEGEVQRQLI+LLS LDRDGV VVDPASYRIFQYNPPYTLPWLRRNEILVEV+G  PS G+           K    V+ ET      V  + E GE        DD+SPSDY
Sbjct:   30 TRRVVVGLLLWDFLDRSGAFWLPSRLPP---RVAVSNVVRLEATKSKGELSWQESLELLMSPTTGMAQRQVLFQDVVSRAPEIRKDVEEAIREGSVDGLLTDGIKAVRRQLTEDIIPQLASEPEQAAKILLEEMPKLAQRSYENLPKNPKEL---AETLREVSTALPSEARNVFLRTPEGLETPSFQVLHEGHGYEIREYDPYTVAYTEMGSSDAKAGSTSAGPVLGSPTMTGGAFNTLAGYIFGANEAKTNMAMTTPVEIRKDAQHRGAGEAYSMRFIMASPYTTETAPRPMDSKVRLTTT-ARERLAAREFAGFATEGEVQRQLISLLSLLDRDGVTVVDPASYRIFQYNPPYTLPWLRRNEILVEVRGG-PSVGT----------VKMEEPVLVETT----LVNEEDEGGE--------DDLSPSDY 429
The following BLAST results are available for this feature:
BLAST of NO05G00940.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28188.12.100e-14870.47soul heme-binding protein [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G00940NO05G00940Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G00940.1NO05G00940.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G00940.1.cds1NO05G00940.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G00940.1.cds2NO05G00940.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G00940.1.cds3NO05G00940.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G00940.1.cds4NO05G00940.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G00940.1.cds5NO05G00940.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G00940.1 ID=NO05G00940.1|Name=NO05G00940.1|organism=Nannochloropsis oceanica|type=mRNA|length=1302bp
ATGCTCAAGACGGCTGCGGCAGCCTCTGGACTTCTGCTGCTCTGCCGTGT
GGACCAGGGCAGTGCTTTCCTCCTCCCCTCGGCCTCGCTAGCGCATTCGT
GCCGGGCTACCGCCAGCAGCTTGATGCGCATGGAGGGGACAAAGGCGAAA
GAAGCCTTATCATGGCAAGAATCCTTAGAGCTTCTCATCTCACCGACCAC
CACCCTGGCCCAGCGCCAGGTCCTTTTCCAGGACGTCGTCTCCCGCGCTC
CCGAAATAAGGAGTGACGTGGAGGAAGCCATCTCGGAAGGGTCCATTGAC
GGGCTGCTGACTGACGGTGTCAAGGCTGTGCGTAGACAGCTTAAGGAGGA
CATTATCCCGCAGCTCGCTTCCGAGCCCCAGCAAGCAGCCAAAATACTCC
TGGAAGAGCTCCCCAAGCTCGCCCAGCGCTCTTACGAGGGTCTGCCCAAG
AATCAAAAGGACTTAAAACAGTTCGCTGCCGCCCTCCGCGAGGTTTCCTC
CTCCCTGCCTACTGAAGCCCGTAACGTCTTCCTTCGTACACCCGAAGGCC
TGGAGACTCCTTCCTTCCGCGTTGTTTATGATGGACCAGGTTATGACATT
CGAGAATACGACTCCTACACTGTGGCTTACACCGAGATGGGCGAGAGGGC
CCTTGGGTCCTCCTCCGACAGCACGGGCCCCGTCCTCGGCAGCCCAGCCA
TGACGGGCGGCGCGTTCAACACCCTCGCGGGCTACATTTTTGGCGCGAAC
GAGGCAAATATTAACATGGCCATGACCACGCCGGTGGAGATCCGAAAGGA
AGCCCACCACCGTGGAGGGGGAGAAGCGTACAGCATGCGTTTTATCGTGT
CCTCGTCTTACACGACCGAAACGGCTCCGAGGCCCGTTGACGCCAAGGTA
AGGCTGACCACCACGCCGCCGGGGGAGCGATTGGCGGCCAGGGAGTTTGC
GGGGTTTGCCACGGAGGGCGAGGTGCAACGACAGCTTATCGCGCTCTTAT
CGGCCTTGGATAGGGATGGTGTGCCTGTGGTGGACCCTGCCTCCTACCGC
ATTTTCCAGTACAACCCTCCCTATACTCTACCGTGGCTGCGACGGAACGA
AATTTTGGTGGAAGTCAAGGGGAATGTACCTTCTCCTGGCTCGTCCTCCT
CCGCTTCCTCGGTCGCAGACGTGGCGAAATCGGCGGCGACAGTTATGGAC
GAAACCGTGACAGACCAGTGGGCTGTGCGTGGTGATATGGAGCTAGGGGA
GACGGGGAACAATGCGGAGGACAAGGATGATGTCAGCCCGTCCGATTATT
AA
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protein sequence of NO05G00940.1

>NO05G00940.1-protein ID=NO05G00940.1-protein|Name=NO05G00940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=434bp
MLKTAAAASGLLLLCRVDQGSAFLLPSASLAHSCRATASSLMRMEGTKAK
EALSWQESLELLISPTTTLAQRQVLFQDVVSRAPEIRSDVEEAISEGSID
GLLTDGVKAVRRQLKEDIIPQLASEPQQAAKILLEELPKLAQRSYEGLPK
NQKDLKQFAAALREVSSSLPTEARNVFLRTPEGLETPSFRVVYDGPGYDI
REYDSYTVAYTEMGERALGSSSDSTGPVLGSPAMTGGAFNTLAGYIFGAN
EANINMAMTTPVEIRKEAHHRGGGEAYSMRFIVSSSYTTETAPRPVDAKV
RLTTTPPGERLAAREFAGFATEGEVQRQLIALLSALDRDGVPVVDPASYR
IFQYNPPYTLPWLRRNEILVEVKGNVPSPGSSSSASSVADVAKSAATVMD
ETVTDQWAVRGDMELGETGNNAEDKDDVSPSDY*
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mRNA from alignment at chr5:287400..289291-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G00940.1 ID=NO05G00940.1|Name=NO05G00940.1|organism=Nannochloropsis oceanica|type=mRNA|length=1892bp|location=Sequence derived from alignment at chr5:287400..289291- (Nannochloropsis oceanica)
ATGCTCAAGACGGCTGCGGCAGCCTCTGGACTTCTGCTGCTCTGCCGTGT
GGACCAGGGCAGTGCTTTCCTCCTCCCCTCGGCCTCGCTAGCGCATTCGT
GCCGGGCTACCGCCAGCAGCTTGATGCGCATGGAGGGGACAAAGGCGAAA
GAAGCCTTATCATGGCAAGAATCCTTAGAGCTTCTCATCTCACCGACCAC
CACCCTGGCCCAGCGCCAGGTCCTTTTCCAGGTACGTGCACGGCATGAGT
AGCGAAAATGGACGATGGATTGGAGTGGAGTGCGCCCACGCGCCCCTCCT
AAGCCTGTATTTCCCTATTTCCCTTTCTCCCAAGGTACTGAATATGTTGT
TTGACATGTTGATCTGCCATCCCCCAACCTCACCTCACTCCTTCCTCCCT
CTTTACCTCCCAACCACCTCCACCACCAGGACGTCGTCTCCCGCGCTCCC
GAAATAAGGAGTGACGTGGAGGAAGCCATCTCGGAAGGGTCCATTGACGG
GCTGCTGACTGACGGTGTCAAGGCTGTGGTACGTGCGTATTCTCTCGCTT
CAATTTATCTCTATCGAAGCGAGCTTGTTTTGTCGTTGCCTCGTTACATA
CACACCTCTGATGGAAGCATCGTGCCCACCTCTCATCTTAACCCCACACA
CTCACAACCAACCACCTCAGCGTAGACAGCTTAAGGAGGACATTATCCCG
CAGCTCGCTTCCGAGCCCCAGCAAGCAGCCAAAATACTCCTGGAAGAGCT
CCCCAAGCTCGCCCAGCGCTCTTACGAGGGTCTGCCCAAGAATCAAAAGG
ACGTACGTCACTCTGTCCTGTCCATCCCTCCCTCCTTCCCTCCTCGCATC
CCTTCATTTCATATCGTCCACCATCTTTTGCGTGCTCCCTTCCTCTCTCT
CACCACAGTTAAAACAGTTCGCTGCCGCCCTCCGCGAGGTTTCCTCCTCC
CTGCCTACTGAAGCCCGTAACGTCTTCCTTCGTACACCCGAAGGCCTGGA
GACTCCTTCCTTCCGCGTTGTTTATGATGGACCAGGTTATGACATTCGAG
AATACGACTCCTACACTGGTAAGTCTCCGAACCTCACTACGTCGCTCGCT
CCCTTGCTCCCTCCCCTATCTCCCATCTATCTTCAATAGAGCAGATTGTA
AGCAGCTCACCTTCCCACCCCTCTTTGCCTCCCCCCTTGCCTCCCCCCCT
GTTTTCTCTAAGTGGCTTACACCGAGATGGGCGAGAGGGCCCTTGGGTCC
TCCTCCGACAGCACGGGCCCCGTCCTCGGCAGCCCAGCCATGACGGGCGG
CGCGTTCAACACCCTCGCGGGCTACATTTTTGGCGCGAACGAGGCAAATA
TTAACATGGCCATGACCACGCCGGTGGAGATCCGAAAGGAAGCCCACCAC
CGTGGAGGGGGAGAAGCGTACAGCATGCGTTTTATCGTGTCCTCGTCTTA
CACGACCGAAACGGCTCCGAGGCCCGTTGACGCCAAGGTAAGGCTGACCA
CCACGCCGCCGGGGGAGCGATTGGCGGCCAGGGAGTTTGCGGGGTTTGCC
ACGGAGGGCGAGGTGCAACGACAGCTTATCGCGCTCTTATCGGCCTTGGA
TAGGGATGGTGTGCCTGTGGTGGACCCTGCCTCCTACCGCATTTTCCAGT
ACAACCCTCCCTATACTCTACCGTGGCTGCGACGGAACGAAATTTTGGTG
GAAGTCAAGGGGAATGTACCTTCTCCTGGCTCGTCCTCCTCCGCTTCCTC
GGTCGCAGACGTGGCGAAATCGGCGGCGACAGTTATGGACGAAACCGTGA
CAGACCAGTGGGCTGTGCGTGGTGATATGGAGCTAGGGGAGACGGGGAAC
AATGCGGAGGACAAGGATGATGTCAGCCCGTCCGATTATTAA
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Coding sequence (CDS) from alignment at chr5:287400..289291-

>NO05G00940.1 ID=NO05G00940.1|Name=NO05G00940.1|organism=Nannochloropsis oceanica|type=CDS|length=1302bp|location=Sequence derived from alignment at chr5:287400..289291- (Nannochloropsis oceanica)
ATGCTCAAGACGGCTGCGGCAGCCTCTGGACTTCTGCTGCTCTGCCGTGT
GGACCAGGGCAGTGCTTTCCTCCTCCCCTCGGCCTCGCTAGCGCATTCGT
GCCGGGCTACCGCCAGCAGCTTGATGCGCATGGAGGGGACAAAGGCGAAA
GAAGCCTTATCATGGCAAGAATCCTTAGAGCTTCTCATCTCACCGACCAC
CACCCTGGCCCAGCGCCAGGTCCTTTTCCAGGACGTCGTCTCCCGCGCTC
CCGAAATAAGGAGTGACGTGGAGGAAGCCATCTCGGAAGGGTCCATTGAC
GGGCTGCTGACTGACGGTGTCAAGGCTGTGCGTAGACAGCTTAAGGAGGA
CATTATCCCGCAGCTCGCTTCCGAGCCCCAGCAAGCAGCCAAAATACTCC
TGGAAGAGCTCCCCAAGCTCGCCCAGCGCTCTTACGAGGGTCTGCCCAAG
AATCAAAAGGACTTAAAACAGTTCGCTGCCGCCCTCCGCGAGGTTTCCTC
CTCCCTGCCTACTGAAGCCCGTAACGTCTTCCTTCGTACACCCGAAGGCC
TGGAGACTCCTTCCTTCCGCGTTGTTTATGATGGACCAGGTTATGACATT
CGAGAATACGACTCCTACACTGTGGCTTACACCGAGATGGGCGAGAGGGC
CCTTGGGTCCTCCTCCGACAGCACGGGCCCCGTCCTCGGCAGCCCAGCCA
TGACGGGCGGCGCGTTCAACACCCTCGCGGGCTACATTTTTGGCGCGAAC
GAGGCAAATATTAACATGGCCATGACCACGCCGGTGGAGATCCGAAAGGA
AGCCCACCACCGTGGAGGGGGAGAAGCGTACAGCATGCGTTTTATCGTGT
CCTCGTCTTACACGACCGAAACGGCTCCGAGGCCCGTTGACGCCAAGGTA
AGGCTGACCACCACGCCGCCGGGGGAGCGATTGGCGGCCAGGGAGTTTGC
GGGGTTTGCCACGGAGGGCGAGGTGCAACGACAGCTTATCGCGCTCTTAT
CGGCCTTGGATAGGGATGGTGTGCCTGTGGTGGACCCTGCCTCCTACCGC
ATTTTCCAGTACAACCCTCCCTATACTCTACCGTGGCTGCGACGGAACGA
AATTTTGGTGGAAGTCAAGGGGAATGTACCTTCTCCTGGCTCGTCCTCCT
CCGCTTCCTCGGTCGCAGACGTGGCGAAATCGGCGGCGACAGTTATGGAC
GAAACCGTGACAGACCAGTGGGCTGTGCGTGGTGATATGGAGCTAGGGGA
GACGGGGAACAATGCGGAGGACAAGGATGATGTCAGCCCGTCCGATTATT
AA
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Synonyms
Publications