NO05G00540.1, NO05G00540.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G00540.1
Unique NameNO05G00540.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1617
Alignment locationchr5:189251..190867 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:189251..190867 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G00540.1 vs.
Match: EWM28327.1 (UBX domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 542.7 bits (1397), Expect = 1.300e-150
Identity = 332/563 (58.97%), Postives = 399/563 (70.87%), Query Frame = 0 
Query:    2 STPQQRTERISLLKEVTGIEDDGTATHLLNKNAWDVQHAVQEYLSGGSG-TQAPTSIPPSSSTNG--HVRRRSTSPGSERRIRARQQQLMQQQREGGGGGGGGEFDDSM---MMGGGEEDNAPLLGRSGSVTGGGG---GAAAMEVEGGGAGRVGGGGGASSLVALPFHLAGSVLRTLLAPVRYI--TGSGGDGEMHDPKRAAELFIEAYEKQYHCAPNEGGGGG-----------GGAGG----ARPRPRFLPLSFHEATRLAAREQKFLVVYLHAPLHEHTPSFLSQILNTDTLTSFLDDNLVVWGGSIHSADAYHTSQLLDASAFPFLALLACHDAPHLTVLEHMEGLGGDGGREGGIGVEGVLQRLTAAMARQQEVLARQEAAMRERTERIRLQEEQNREYQEALEADRKREADLAAERERVKEEEEREKKMMEEANEERERKRREAAERTMMIKARLPAEPPMGDKAALRLRLQFPHGKKMDRRFDRDDTLQVVRDFIDVSVAEAEEEGWGDGSRKLVNYSLSTPYPKRTFGEEEVGKTLAEVGLHSADTIYIQDLDA 539
            S+ QQ +E+++LLKEVTGIEDD  AT LL+KN WD+QHAVQEYLSG      +P ++  +SS  G  HVRRRSTSPG+ERR+RA QQQ +Q +R+    G   E ++SM     GGGE D APLLG  G   G G    GA +ME+E GG     GGG      +LPF+L G+VL TLLAPVRYI   G G +GE  +PK AAE FI+ YEK+YHCA  EGGGGG           G  GG     RPRPRFLPLSF +ATRLA+RE K L+VY+HAPLHEHTP+F+ ++LNTD + SFLD N++VWGGS+HSADA  T+Q+LDA+AFPF+AL+AC   PHL+VLEHMEG+  D      IG E +LQRLTAAMAR Q  + +Q+A +RER ER RLQ EQNREYQEALEADR+REA L AE+ R  +E E  ++  EE  EE E+KR   A+     ++RLP EP  G   ALRLRLQFPHGKK+DRRF   D++Q+VRDFIDV VAE E+ G  +G R LVNYSLSTP+PKRTFG  EVG TL EVGLHSADTIYI DLDA
Sbjct:    3 SSSQQSSEKVALLKEVTGIEDDDVATFLLSKNNWDIQHAVQEYLSGEPTLASSPPALVSASSPAGQSHVRRRSTSPGTERRVRAHQQQWLQARRD----GKDAEVEESMGGSAGGGGEGDEAPLLGLRGGGEGNGEERVGAGSMEMEQGGRNGARGGG-----ASLPFYLVGNVLHTLLAPVRYIAGVGEGMEGETQNPKEAAEAFIKNYEKEYHCAGVEGGGGGEVEGREGAGEIGEGGGYAWTPRPRPRFLPLSFQDATRLASREGKLLLVYVHAPLHEHTPAFVQRVLNTDPIVSFLDGNMLVWGGSVHSADACQTAQILDAAAFPFIALVACQRHPHLSVLEHMEGVTAD------IGPEAILQRLTAAMARLQAAMEQQQAVVREREERSRLQAEQNREYQEALEADRRREAALVAEKARAVQEAEAAQRRAEEEREEEEKKRVVYAQCIAEKQSRLPPEPAPGSPGALRLRLQFPHGKKLDRRFRPTDSIQIVRDFIDVQVAEEEKGGKEEGCR-LVNYSLSTPFPKRTFG--EVGMTLQEVGLHSADTIYITDLDA 547
The following BLAST results are available for this feature:
BLAST of NO05G00540.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28327.11.300e-15058.97UBX domain-containing protein [Nannochloropsis gad... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G00540NO05G00540Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G00540.1NO05G00540.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G00540.1.cds1NO05G00540.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G00540.1 ID=NO05G00540.1|Name=NO05G00540.1|organism=Nannochloropsis oceanica|type=mRNA|length=1617bp
ATGAGTACTCCACAACAACGCACCGAACGCATCTCTCTTCTTAAGGAAGT
AACGGGTATCGAAGACGACGGCACAGCCACGCATCTCCTCAACAAAAACG
CCTGGGACGTGCAACACGCAGTCCAAGAATACTTGTCAGGAGGCAGCGGA
ACGCAAGCCCCTACCTCCATCCCTCCCTCATCAAGCACCAATGGACATGT
TCGTAGGCGTAGTACATCCCCGGGATCGGAGCGACGGATTCGGGCACGGC
AACAGCAGTTGATGCAGCAGCAACGAGAAGGAGGGGGGGGAGGAGGGGGA
GGAGAGTTTGACGATTCCATGATGATGGGAGGAGGGGAAGAGGATAATGC
CCCGCTTTTGGGGAGGAGTGGGAGTGTGACGGGAGGAGGGGGAGGGGCGG
CGGCAATGGAGGTAGAAGGTGGTGGTGCTGGAAGAGTAGGAGGAGGGGGA
GGGGCGTCGTCCTTGGTGGCCTTGCCCTTTCATTTGGCGGGCAGTGTGCT
GAGGACGTTATTGGCGCCAGTACGGTACATCACAGGAAGTGGAGGTGACG
GAGAAATGCATGACCCAAAGCGGGCGGCGGAGTTATTTATCGAAGCCTAC
GAGAAGCAGTATCATTGTGCGCCGAATGAAGGGGGGGGGGGAGGAGGAGG
AGCAGGGGGGGCTCGTCCTCGTCCTCGTTTTCTCCCCCTATCCTTCCACG
AAGCCACGCGTCTGGCCGCGAGGGAACAAAAGTTTTTGGTCGTCTACCTG
CACGCCCCCCTACACGAGCACACTCCATCGTTCCTATCCCAAATTCTCAA
TACGGACACCCTCACGTCCTTCCTCGATGACAATCTGGTGGTCTGGGGGG
GGTCCATCCACTCGGCCGATGCCTACCATACCTCCCAGCTGCTGGATGCC
TCCGCTTTCCCTTTTCTGGCCCTCCTCGCCTGCCACGACGCGCCCCATCT
CACCGTGCTAGAGCACATGGAGGGGCTAGGCGGGGACGGAGGGAGGGAGG
GAGGAATCGGAGTCGAAGGGGTGTTGCAGCGTCTGACGGCGGCGATGGCC
CGGCAGCAGGAGGTACTAGCAAGGCAGGAGGCGGCGATGAGGGAGCGGAC
GGAGAGGATAAGGCTGCAAGAGGAGCAGAATAGGGAGTATCAAGAAGCCC
TAGAAGCGGACAGGAAGAGGGAAGCAGACTTGGCGGCGGAGAGGGAGAGG
GTGAAGGAGGAGGAGGAGAGGGAGAAGAAGATGATGGAGGAGGCCAACGA
GGAGAGAGAGAGGAAACGGAGGGAGGCAGCCGAAAGAACGATGATGATAA
AGGCGCGGCTACCGGCAGAGCCACCTATGGGGGATAAGGCGGCGTTGCGT
CTACGCTTGCAGTTTCCACACGGAAAGAAGATGGACAGGAGGTTTGACCG
CGACGATACTCTCCAAGTAGTGCGGGATTTTATTGATGTGTCGGTGGCCG
AAGCGGAGGAAGAGGGCTGGGGGGACGGAAGCCGGAAGTTGGTAAATTAT
AGCTTATCGACTCCGTACCCGAAGCGGACGTTTGGGGAGGAGGAAGTGGG
CAAAACCTTGGCTGAGGTGGGCTTGCACAGTGCCGACACAATATATATTC
AGGACCTGGATGCGTAA
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protein sequence of NO05G00540.1

>NO05G00540.1-protein ID=NO05G00540.1-protein|Name=NO05G00540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=539bp
MSTPQQRTERISLLKEVTGIEDDGTATHLLNKNAWDVQHAVQEYLSGGSG
TQAPTSIPPSSSTNGHVRRRSTSPGSERRIRARQQQLMQQQREGGGGGGG
GEFDDSMMMGGGEEDNAPLLGRSGSVTGGGGGAAAMEVEGGGAGRVGGGG
GASSLVALPFHLAGSVLRTLLAPVRYITGSGGDGEMHDPKRAAELFIEAY
EKQYHCAPNEGGGGGGGAGGARPRPRFLPLSFHEATRLAAREQKFLVVYL
HAPLHEHTPSFLSQILNTDTLTSFLDDNLVVWGGSIHSADAYHTSQLLDA
SAFPFLALLACHDAPHLTVLEHMEGLGGDGGREGGIGVEGVLQRLTAAMA
RQQEVLARQEAAMRERTERIRLQEEQNREYQEALEADRKREADLAAERER
VKEEEEREKKMMEEANEERERKRREAAERTMMIKARLPAEPPMGDKAALR
LRLQFPHGKKMDRRFDRDDTLQVVRDFIDVSVAEAEEEGWGDGSRKLVNY
SLSTPYPKRTFGEEEVGKTLAEVGLHSADTIYIQDLDA*
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mRNA from alignment at chr5:189251..190867+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G00540.1 ID=NO05G00540.1|Name=NO05G00540.1|organism=Nannochloropsis oceanica|type=mRNA|length=1617bp|location=Sequence derived from alignment at chr5:189251..190867+ (Nannochloropsis oceanica)
ATGAGTACTCCACAACAACGCACCGAACGCATCTCTCTTCTTAAGGAAGT
AACGGGTATCGAAGACGACGGCACAGCCACGCATCTCCTCAACAAAAACG
CCTGGGACGTGCAACACGCAGTCCAAGAATACTTGTCAGGAGGCAGCGGA
ACGCAAGCCCCTACCTCCATCCCTCCCTCATCAAGCACCAATGGACATGT
TCGTAGGCGTAGTACATCCCCGGGATCGGAGCGACGGATTCGGGCACGGC
AACAGCAGTTGATGCAGCAGCAACGAGAAGGAGGGGGGGGAGGAGGGGGA
GGAGAGTTTGACGATTCCATGATGATGGGAGGAGGGGAAGAGGATAATGC
CCCGCTTTTGGGGAGGAGTGGGAGTGTGACGGGAGGAGGGGGAGGGGCGG
CGGCAATGGAGGTAGAAGGTGGTGGTGCTGGAAGAGTAGGAGGAGGGGGA
GGGGCGTCGTCCTTGGTGGCCTTGCCCTTTCATTTGGCGGGCAGTGTGCT
GAGGACGTTATTGGCGCCAGTACGGTACATCACAGGAAGTGGAGGTGACG
GAGAAATGCATGACCCAAAGCGGGCGGCGGAGTTATTTATCGAAGCCTAC
GAGAAGCAGTATCATTGTGCGCCGAATGAAGGGGGGGGGGGAGGAGGAGG
AGCAGGGGGGGCTCGTCCTCGTCCTCGTTTTCTCCCCCTATCCTTCCACG
AAGCCACGCGTCTGGCCGCGAGGGAACAAAAGTTTTTGGTCGTCTACCTG
CACGCCCCCCTACACGAGCACACTCCATCGTTCCTATCCCAAATTCTCAA
TACGGACACCCTCACGTCCTTCCTCGATGACAATCTGGTGGTCTGGGGGG
GGTCCATCCACTCGGCCGATGCCTACCATACCTCCCAGCTGCTGGATGCC
TCCGCTTTCCCTTTTCTGGCCCTCCTCGCCTGCCACGACGCGCCCCATCT
CACCGTGCTAGAGCACATGGAGGGGCTAGGCGGGGACGGAGGGAGGGAGG
GAGGAATCGGAGTCGAAGGGGTGTTGCAGCGTCTGACGGCGGCGATGGCC
CGGCAGCAGGAGGTACTAGCAAGGCAGGAGGCGGCGATGAGGGAGCGGAC
GGAGAGGATAAGGCTGCAAGAGGAGCAGAATAGGGAGTATCAAGAAGCCC
TAGAAGCGGACAGGAAGAGGGAAGCAGACTTGGCGGCGGAGAGGGAGAGG
GTGAAGGAGGAGGAGGAGAGGGAGAAGAAGATGATGGAGGAGGCCAACGA
GGAGAGAGAGAGGAAACGGAGGGAGGCAGCCGAAAGAACGATGATGATAA
AGGCGCGGCTACCGGCAGAGCCACCTATGGGGGATAAGGCGGCGTTGCGT
CTACGCTTGCAGTTTCCACACGGAAAGAAGATGGACAGGAGGTTTGACCG
CGACGATACTCTCCAAGTAGTGCGGGATTTTATTGATGTGTCGGTGGCCG
AAGCGGAGGAAGAGGGCTGGGGGGACGGAAGCCGGAAGTTGGTAAATTAT
AGCTTATCGACTCCGTACCCGAAGCGGACGTTTGGGGAGGAGGAAGTGGG
CAAAACCTTGGCTGAGGTGGGCTTGCACAGTGCCGACACAATATATATTC
AGGACCTGGATGCGTAA
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Coding sequence (CDS) from alignment at chr5:189251..190867+

>NO05G00540.1 ID=NO05G00540.1|Name=NO05G00540.1|organism=Nannochloropsis oceanica|type=CDS|length=1617bp|location=Sequence derived from alignment at chr5:189251..190867+ (Nannochloropsis oceanica)
ATGAGTACTCCACAACAACGCACCGAACGCATCTCTCTTCTTAAGGAAGT
AACGGGTATCGAAGACGACGGCACAGCCACGCATCTCCTCAACAAAAACG
CCTGGGACGTGCAACACGCAGTCCAAGAATACTTGTCAGGAGGCAGCGGA
ACGCAAGCCCCTACCTCCATCCCTCCCTCATCAAGCACCAATGGACATGT
TCGTAGGCGTAGTACATCCCCGGGATCGGAGCGACGGATTCGGGCACGGC
AACAGCAGTTGATGCAGCAGCAACGAGAAGGAGGGGGGGGAGGAGGGGGA
GGAGAGTTTGACGATTCCATGATGATGGGAGGAGGGGAAGAGGATAATGC
CCCGCTTTTGGGGAGGAGTGGGAGTGTGACGGGAGGAGGGGGAGGGGCGG
CGGCAATGGAGGTAGAAGGTGGTGGTGCTGGAAGAGTAGGAGGAGGGGGA
GGGGCGTCGTCCTTGGTGGCCTTGCCCTTTCATTTGGCGGGCAGTGTGCT
GAGGACGTTATTGGCGCCAGTACGGTACATCACAGGAAGTGGAGGTGACG
GAGAAATGCATGACCCAAAGCGGGCGGCGGAGTTATTTATCGAAGCCTAC
GAGAAGCAGTATCATTGTGCGCCGAATGAAGGGGGGGGGGGAGGAGGAGG
AGCAGGGGGGGCTCGTCCTCGTCCTCGTTTTCTCCCCCTATCCTTCCACG
AAGCCACGCGTCTGGCCGCGAGGGAACAAAAGTTTTTGGTCGTCTACCTG
CACGCCCCCCTACACGAGCACACTCCATCGTTCCTATCCCAAATTCTCAA
TACGGACACCCTCACGTCCTTCCTCGATGACAATCTGGTGGTCTGGGGGG
GGTCCATCCACTCGGCCGATGCCTACCATACCTCCCAGCTGCTGGATGCC
TCCGCTTTCCCTTTTCTGGCCCTCCTCGCCTGCCACGACGCGCCCCATCT
CACCGTGCTAGAGCACATGGAGGGGCTAGGCGGGGACGGAGGGAGGGAGG
GAGGAATCGGAGTCGAAGGGGTGTTGCAGCGTCTGACGGCGGCGATGGCC
CGGCAGCAGGAGGTACTAGCAAGGCAGGAGGCGGCGATGAGGGAGCGGAC
GGAGAGGATAAGGCTGCAAGAGGAGCAGAATAGGGAGTATCAAGAAGCCC
TAGAAGCGGACAGGAAGAGGGAAGCAGACTTGGCGGCGGAGAGGGAGAGG
GTGAAGGAGGAGGAGGAGAGGGAGAAGAAGATGATGGAGGAGGCCAACGA
GGAGAGAGAGAGGAAACGGAGGGAGGCAGCCGAAAGAACGATGATGATAA
AGGCGCGGCTACCGGCAGAGCCACCTATGGGGGATAAGGCGGCGTTGCGT
CTACGCTTGCAGTTTCCACACGGAAAGAAGATGGACAGGAGGTTTGACCG
CGACGATACTCTCCAAGTAGTGCGGGATTTTATTGATGTGTCGGTGGCCG
AAGCGGAGGAAGAGGGCTGGGGGGACGGAAGCCGGAAGTTGGTAAATTAT
AGCTTATCGACTCCGTACCCGAAGCGGACGTTTGGGGAGGAGGAAGTGGG
CAAAACCTTGGCTGAGGTGGGCTTGCACAGTGCCGACACAATATATATTC
AGGACCTGGATGCGTAA
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Synonyms
Publications