NO05G00360.1, NO05G00360.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G00360.1
Unique NameNO05G00360.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length877
Alignment locationchr5:141104..142220 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:141104..142220 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G00360.1 vs.
Match: EWM28349.1 (threonine synthase [Nannochloropsis gaditana])

HSP 1 Score: 255.0 bits (650), Expect = 2.700e-64
Identity = 162/255 (63.53%), Postives = 184/255 (72.16%), Query Frame = 0 
Query:    1 MRYISTR---GESSSSSSRLTFREAVLAGWAPDGGMLLPERIPQVTPAMLEEWRGLSYPQLVTRLLALFVTDDGDEDDGKTEEE---VPLEAIVDASFGSFATPEVVTFKALPWPSSSSSSSSSSSSSSSSSSSSSSSCSSSPSSAPSLYIAELFHGPSLAFKDLGMQVLAHLLNFYLFKQHQKMTFLVGTSGDTGPSAAAAVKGKENMRVIVLYPLGRVSPLQEAQMLTAHEG-GGGGGGGGGRRKGRRGGTCG 249
            MRYISTR     SS SS R +FREAVLAGWAPDGGM LPERIP V+  +LE WRGL+YP+LVT+LLALF+ DDGD +D     E   VPL  IVDASF SFA PEVV +KALPWP  SSSS+++SSS+S   S             PSLYIAELFHGPSLAFKDLGMQVL +LL  YL ++ ++MTFLVGTSGDTGPSAAAAV+GK  MR++VLYPLGRVS  QEAQML  H G GG G    G     + GT G
Sbjct:    1 MRYISTRYDPSSSSPSSRRYSFREAVLAGWAPDGGMFLPERIPHVSRGVLESWRGLTYPELVTKLLALFM-DDGDAEDATQNAEVDKVPLRKIVDASFASFAVPEVVRWKALPWPYLSSSSTTASSSASLPLSCHPLPSFLEKQEPPSLYIAELFHGPSLAFKDLGMQVLTNLLEHYLLQEGRRMTFLVGTSGDTGPSAAAAVQGKVAMRLVVLYPLGRVSTFQEAQMLATHGGVGGSGEKASGAAAEAKAGTLG 254
The following BLAST results are available for this feature:
BLAST of NO05G00360.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28349.12.700e-6463.53threonine synthase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G00360NO05G00360Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G00360.1NO05G00360.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G00360.1.cds1NO05G00360.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G00360.1.cds2NO05G00360.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G00360.1 ID=NO05G00360.1|Name=NO05G00360.1|organism=Nannochloropsis oceanica|type=mRNA|length=877bp
CAGCAATACCACAGGAGTATTGATAGTCACGACCCAACGCCCTATGCGGT
ACATTAGCACCCGAGGAGAATCTTCCTCCTCTTCGTCGCGCCTCACATTT
CGTGAAGCCGTGCTAGCAGGATGGGCTCCGGACGGAGGCATGCTCCTACC
AGAGCGCATCCCGCAGGTGACGCCTGCGATGCTGGAAGAATGGAGAGGCC
TCTCATATCCCCAATTAGTCACCAGGCTCTTGGCTTTGTTTGTGACGGAC
GACGGGGACGAGGACGACGGGAAGACCGAAGAGGAAGTGCCATTGGAAGC
GATTGTGGACGCCAGCTTTGGCTCCTTTGCTACGCCCGAGGTGGTGACAT
TCAAGGCCTTGCCGTGGCCTTCGTCGTCGTCGTCGTCGTCCTCCTCCTCC
TCCTCCTCCTCTTCCTCCTCCTCTTCCTCCTCCTCCTCCTGCTCCTCCTC
CCCCTCCTCTGCTCCCTCCCTCTATATCGCCGAATTGTTCCACGGGCCCT
CCTTGGCATTCAAAGACTTAGGCATGCAAGTCTTAGCTCATCTCCTCAAC
TTCTACCTCTTCAAGCAACACCAAAAAATGACCTTTCTAGTTGGCACATC
AGGAGACACGGGGCCTTCAGCAGCAGCGGCAGTTAAGGGCAAAGAGAACA
TGAGGGTGATAGTATTATATCCCCTCGGGAGGGTCAGTCCCTTGCAGGAA
GCTCAGATGCTGACCGCGCATGAGGGAGGGGGAGGGGGAGGGGGAGGGGG
AGGAAGAAGGAAGGGAAGAAGAGGGGGAACGTGCGGGTGGTGGCAGTGGA
GGGGACAAGCGATGATCTGGACGAACCTATCGCCGAATTGTTTCAGGATA
AAGATTATAGGTCCCACCACTGCCTAG
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protein sequence of NO05G00360.1

>NO05G00360.1-protein ID=NO05G00360.1-protein|Name=NO05G00360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=278bp
MRYISTRGESSSSSSRLTFREAVLAGWAPDGGMLLPERIPQVTPAMLEEW
RGLSYPQLVTRLLALFVTDDGDEDDGKTEEEVPLEAIVDASFGSFATPEV
VTFKALPWPSSSSSSSSSSSSSSSSSSSSSSSCSSSPSSAPSLYIAELFH
GPSLAFKDLGMQVLAHLLNFYLFKQHQKMTFLVGTSGDTGPSAAAAVKGK
ENMRVIVLYPLGRVSPLQEAQMLTAHEGGGGGGGGGGRRKGRRGGTCGWW
QWRGQAMIWTNLSPNCFRIKIIGPTTA*
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mRNA from alignment at chr5:141104..142220-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G00360.1 ID=NO05G00360.1|Name=NO05G00360.1|organism=Nannochloropsis oceanica|type=mRNA|length=1117bp|location=Sequence derived from alignment at chr5:141104..142220- (Nannochloropsis oceanica)
CAGCAATACCACAGGAGTATTGATAGTCACGACCCAACGCCCTATGCGGT
ACATTAGCACCCGAGGAGAATCTTCCTCCTCTTCGTCGCGCCTCACATTT
CGTGAAGCCGTGCTAGCAGGATGGGCTCCGGACGGAGGCATGCTCCTACC
AGAGCGCATCCCGCAGGTGACGCCTGCGATGCTGGAAGAATGGAGAGGCC
TCTCATATCCCCAATTAGTCACCAGGCTCTTGGCTTTGTTTGTGACGGAC
GACGGGGACGAGGACGACGGGAAGACCGAAGAGGAAGTGCCATTGGAAGC
GATTGTGGACGCCAGCTTTGGCTCCTTTGCTACGCCCGAGGTGGTGACAT
TCAAGGCCTTGCCGTGGCCTTCGTCGTCGTCGTCGTCGTCCTCCTCCTCC
TCCTCCTCCTCTTCCTCCTCCTCTTCCTCCTCCTCCTCCTGCTCCTCCTC
CCCCTCCTCTGCTCCCTCCCTCTATATCGCCGAATTGTTCCACGGGCCCT
CCTTGGCATTCAAAGACTTAGGCATGCAAGTCTTAGCTCATCTCCTCAAC
TTCTACCTCTTCAAGCAACACCAAAAAATGACCTTTCTAGTTGGCACATC
AGGAGACACGGGGCCTTCAGCAGCAGCGGCAGTTAAGGGCAAAGAGAACA
TGAGGGTGATAGTATTATATCCCCTCGGGAGGGTCAGTCCCTTGCAGGAA
GCTCAGATGCTGACCGCGCATGAGGGAGGGGGAGGGGGAGGGGGAGGGGG
AGGAAGAAGGAAGGGAAGAAGAGGGGGAACGTGCGGGTGGTGGCAGTGGA
GGGGACAAGCGATGATCTGGACGAACCTATCGCCGAATTGTTTCAGGATA
AAGATTATAGGTATGGCCTGTCTGCTTGTCTTTTCCTCCCTCCCTCCCTC
CCTCCCTTCCTCGCTCCTTCCCTCGCTCTCTACGCGCTTGACAGCGCGTG
CTATTCTCTCCCTCGATCCCTCAATCCCTGCCTCCCTCCCTTGGCATCTG
TGAAAACAAGTCTACCTACCCACACATGTCGCTGCTCACTTAACTAGCCC
CTCGTTCCCTCCCTCCCTCCCTCCGTCCTTCTCTCCCTCCCTCCCTTCAG
GTCCCACCACTGCCTAG
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Coding sequence (CDS) from alignment at chr5:141104..142220-

>NO05G00360.1 ID=NO05G00360.1|Name=NO05G00360.1|organism=Nannochloropsis oceanica|type=CDS|length=834bp|location=Sequence derived from alignment at chr5:141104..142220- (Nannochloropsis oceanica)
ATGCGGTACATTAGCACCCGAGGAGAATCTTCCTCCTCTTCGTCGCGCCT
CACATTTCGTGAAGCCGTGCTAGCAGGATGGGCTCCGGACGGAGGCATGC
TCCTACCAGAGCGCATCCCGCAGGTGACGCCTGCGATGCTGGAAGAATGG
AGAGGCCTCTCATATCCCCAATTAGTCACCAGGCTCTTGGCTTTGTTTGT
GACGGACGACGGGGACGAGGACGACGGGAAGACCGAAGAGGAAGTGCCAT
TGGAAGCGATTGTGGACGCCAGCTTTGGCTCCTTTGCTACGCCCGAGGTG
GTGACATTCAAGGCCTTGCCGTGGCCTTCGTCGTCGTCGTCGTCGTCCTC
CTCCTCCTCCTCCTCCTCTTCCTCCTCCTCTTCCTCCTCCTCCTCCTGCT
CCTCCTCCCCCTCCTCTGCTCCCTCCCTCTATATCGCCGAATTGTTCCAC
GGGCCCTCCTTGGCATTCAAAGACTTAGGCATGCAAGTCTTAGCTCATCT
CCTCAACTTCTACCTCTTCAAGCAACACCAAAAAATGACCTTTCTAGTTG
GCACATCAGGAGACACGGGGCCTTCAGCAGCAGCGGCAGTTAAGGGCAAA
GAGAACATGAGGGTGATAGTATTATATCCCCTCGGGAGGGTCAGTCCCTT
GCAGGAAGCTCAGATGCTGACCGCGCATGAGGGAGGGGGAGGGGGAGGGG
GAGGGGGAGGAAGAAGGAAGGGAAGAAGAGGGGGAACGTGCGGGTGGTGG
CAGTGGAGGGGACAAGCGATGATCTGGACGAACCTATCGCCGAATTGTTT
CAGGATAAAGATTATAGGTCCCACCACTGCCTAG
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Synonyms
Publications