NO05G00330.1, NO05G00330.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G00330.1
Unique NameNO05G00330.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length811
Alignment locationchr5:135918..136728 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:135918..136728 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO05G00330.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G00330NO05G00330Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G00330.1NO05G00330.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G00330.1.cds1NO05G00330.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G00330.1 ID=NO05G00330.1|Name=NO05G00330.1|organism=Nannochloropsis oceanica|type=mRNA|length=811bp
CAGGTCAAACCACCCACCCAAGCGGGGTCCACGAAGCCTCCCTACATGCC
AACCGGGGCACGGTACAATTCCAAGTTTTAAGCGATTTGCTGAGGGAGCT
CTCCTCTAGCTAGCCATGCTGCCCAATCATGTCAGACGAGGCAAGAAGTC
GGCCCCGGCCTCGGCCTCTTCGCCCCCCGTTTCAACTCCTCCAAAGGAAG
CGCTATCCCTCGACATTCGTCAAATTGCAGAGCTGGATCCATTCATTCAA
AGCTACATCGCAGCGGAAGACGAGTCCCATCTGGACATGCTTGCTGCGCA
ACTCACCATGCAAGCACACGAAACGCGAGCACTCGCCGCGGCAAACGCTG
CGTACATCCGCGCACCTCGGACTTTAACTACCCCAAAAGCAAATGGAAAT
GATACTACGGCGCATTTTTATGAGCTTGGAGGAGCTGGAATGGGGAGTGA
GGGGATAGGTGAAGGAAAGGGATTGGCTCGAAGGCGGGGACTCTTGAGCT
TTACGTCAGCTGCTTTTGCCTTTGCTGGAGGAAATGGAGGTGGGAAAGGA
GAAGGAGATGGAGGAAGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGCGAAGGAGGATGGATCGACGGGGGAG
GAACGCATTTTGGGGTGTGGAGGCGGGCGGGAGGGAGATTGAGGAGAGGA
GGGAAGAGAGGGAAGCATTATCCACCGGCGCATGCAAGCACGCTCTATGA
GCAGCTGAAGCCGACCCCGATTCGCACATTGACATTCATGAAGGGGGGGG
GAAGAGGGTGA
back to top

protein sequence of NO05G00330.1

>NO05G00330.1-protein ID=NO05G00330.1-protein|Name=NO05G00330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=232bp
MLPNHVRRGKKSAPASASSPPVSTPPKEALSLDIRQIAELDPFIQSYIAA
EDESHLDMLAAQLTMQAHETRALAAANAAYIRAPRTLTTPKANGNDTTAH
FYELGGAGMGSEGIGEGKGLARRRGLLSFTSAAFAFAGGNGGGKGEGDGG
RGGGGRGGGGGGGGGGGGGGEGGWIDGGGTHFGVWRRAGGRLRRGGKRGK
HYPPAHASTLYEQLKPTPIRTLTFMKGGGRG*
back to top

mRNA from alignment at chr5:135918..136728+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G00330.1 ID=NO05G00330.1|Name=NO05G00330.1|organism=Nannochloropsis oceanica|type=mRNA|length=811bp|location=Sequence derived from alignment at chr5:135918..136728+ (Nannochloropsis oceanica)
CAGGTCAAACCACCCACCCAAGCGGGGTCCACGAAGCCTCCCTACATGCC
AACCGGGGCACGGTACAATTCCAAGTTTTAAGCGATTTGCTGAGGGAGCT
CTCCTCTAGCTAGCCATGCTGCCCAATCATGTCAGACGAGGCAAGAAGTC
GGCCCCGGCCTCGGCCTCTTCGCCCCCCGTTTCAACTCCTCCAAAGGAAG
CGCTATCCCTCGACATTCGTCAAATTGCAGAGCTGGATCCATTCATTCAA
AGCTACATCGCAGCGGAAGACGAGTCCCATCTGGACATGCTTGCTGCGCA
ACTCACCATGCAAGCACACGAAACGCGAGCACTCGCCGCGGCAAACGCTG
CGTACATCCGCGCACCTCGGACTTTAACTACCCCAAAAGCAAATGGAAAT
GATACTACGGCGCATTTTTATGAGCTTGGAGGAGCTGGAATGGGGAGTGA
GGGGATAGGTGAAGGAAAGGGATTGGCTCGAAGGCGGGGACTCTTGAGCT
TTACGTCAGCTGCTTTTGCCTTTGCTGGAGGAAATGGAGGTGGGAAAGGA
GAAGGAGATGGAGGAAGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGCGAAGGAGGATGGATCGACGGGGGAG
GAACGCATTTTGGGGTGTGGAGGCGGGCGGGAGGGAGATTGAGGAGAGGA
GGGAAGAGAGGGAAGCATTATCCACCGGCGCATGCAAGCACGCTCTATGA
GCAGCTGAAGCCGACCCCGATTCGCACATTGACATTCATGAAGGGGGGGG
GAAGAGGGTGA
back to top

Coding sequence (CDS) from alignment at chr5:135918..136728+

>NO05G00330.1 ID=NO05G00330.1|Name=NO05G00330.1|organism=Nannochloropsis oceanica|type=CDS|length=696bp|location=Sequence derived from alignment at chr5:135918..136728+ (Nannochloropsis oceanica)
ATGCTGCCCAATCATGTCAGACGAGGCAAGAAGTCGGCCCCGGCCTCGGC
CTCTTCGCCCCCCGTTTCAACTCCTCCAAAGGAAGCGCTATCCCTCGACA
TTCGTCAAATTGCAGAGCTGGATCCATTCATTCAAAGCTACATCGCAGCG
GAAGACGAGTCCCATCTGGACATGCTTGCTGCGCAACTCACCATGCAAGC
ACACGAAACGCGAGCACTCGCCGCGGCAAACGCTGCGTACATCCGCGCAC
CTCGGACTTTAACTACCCCAAAAGCAAATGGAAATGATACTACGGCGCAT
TTTTATGAGCTTGGAGGAGCTGGAATGGGGAGTGAGGGGATAGGTGAAGG
AAAGGGATTGGCTCGAAGGCGGGGACTCTTGAGCTTTACGTCAGCTGCTT
TTGCCTTTGCTGGAGGAAATGGAGGTGGGAAAGGAGAAGGAGATGGAGGA
AGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGCGAAGGAGGATGGATCGACGGGGGAGGAACGCATTTTGGGG
TGTGGAGGCGGGCGGGAGGGAGATTGAGGAGAGGAGGGAAGAGAGGGAAG
CATTATCCACCGGCGCATGCAAGCACGCTCTATGAGCAGCTGAAGCCGAC
CCCGATTCGCACATTGACATTCATGAAGGGGGGGGGAAGAGGGTGA
back to top
Synonyms
Publications