|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr5 | genome | chr5:102201..105857 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G00240.1 vs.
Match: OLP84513.1 (Alpha-protein kinase vwkA [Symbiodinium microadriaticum]) HSP 1 Score: 236.1 bits (601), Expect = 2.900e-58 Identity = 145/331 (43.81%), Postives = 194/331 (58.61%), Query Frame = 0
Query: 100 QLDLVFVVDSTSSMDAYIRAAQESIHGIITRLACDDGVSVRFALISYRDHAPQDSSYVTRVFPFTSHLPTITDNVNSITAEGGGDGPEAMADALYDLLHLEWRSSLPPSPSSSPSIQTSKVAVLIADAPPHGLGEREDGFPNGCPLHHDPLALTRQLAACGITLYTVGCEPAISTYENCKDILIFMAEATGGQALVLESASLLASVILAGAQEEVGLTRLEREVKEVM-------REAGREAGEEEDEDVWVARVKEALRRKGTRTRQLKT--NMRRMTSVQTEVIASCSSLEEAKRRLGSER-AREVEEENGERVSISTGLSSRSFVSAA 421
+LDL F+ D T SM YI+AAQ++I I+ +++ G V+F LI YRDH PQD +YVT+ PFT+ L ++ V+S+ A GGGDGPEA+ LYD LHL WR + ++K+ VLIADAPPHGL DGFPNG P DPL + R +AA GIT Y+VGCEPA+ +Y + +D L +AE TGGQA+ L SA+LLA VI+ G+ EE+ L +L+R+V+E + R AGRE EE R E LR G R+ Q++T +M+ + A SL K LG E REV G + GLS + + A
Sbjct: 46 ELDLCFICDCTGSMGQYIKAAQDNIQSIVAKISQKHGAKVQFGLICYRDHPPQDKTYVTKCHPFTTDLAQMSQYVDSMKASGGGDGPEAVTAGLYDALHLPWRPN------------STKICVLIADAPPHGLEPAGDGFPNGDPDGRDPLDILRSMAAHGITAYSVGCEPALGSYAHARDFLCTVAEITGGQAVALSSAALLADVIINGSVEELALAKLQRKVEEEVLKVQVQARSAGREISTEEAS----TRACENLRAGGMRSVQMETDGHMKHANRACWGLDAEKRSLAHVKEALGREALGREVSPHKGYAMGRKLGLSGTATTAPA 360
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G00240.1 ID=NO05G00240.1|Name=NO05G00240.1|organism=Nannochloropsis oceanica|type=mRNA|length=3229bp AACCCCGACACACACCATTAATAAGCAGCCGCACGCTCCGCTTACGCGCC TGGCCGCACTGCCCTAATAAGAGAATGCAAGCCTTCGTGACCAGCATCTT CTGTCGCACCAAGTCTGACATCTCCAGCTCCACGTCCGCCTCCTCCACTG CCGTGTCTGACAAACCTCCTCGGCCACCCATTCCCATCACCGTCACAGAC GTAAATTCGACGACAGATACGTATTCTTTTTCCTTTCCTAAAGTGTTGAA CAAGGAGGAGGACGAGGAGGGGGAGGACGAGGAGGACGACGAAGATACTG TGGCTACAGCGCTCAGCAATGCGTGCATCACCGAAAGTGCGAAGGAAAAG GAAGCAATGAAGGATGTCCCGCAGCTTGACCTGGTATTTGTGGTTGACTC TACGAGCTCAATGGATGCCTACATCCGAGCAGCGCAAGAGAGCATCCACG GCATCATCACCCGCCTGGCCTGCGATGACGGGGTCTCTGTCCGCTTTGCT CTTATCTCTTACCGAGATCATGCTCCACAGGACTCTTCCTACGTGACGCG GGTCTTCCCATTCACCTCCCACCTACCAACCATCACCGACAACGTAAACA GCATAACGGCTGAAGGCGGAGGTGACGGTCCCGAAGCCATGGCGGACGCC CTGTACGACCTCCTTCATCTTGAATGGCGCTCCTCCCTCCCTCCCTCTCC TTCCTCCTCCCCTTCGATCCAGACAAGCAAAGTCGCTGTGCTCATTGCCG ATGCTCCCCCTCACGGATTGGGAGAGCGTGAAGACGGTTTTCCAAATGGC TGCCCTCTCCATCATGACCCTCTCGCTTTGACTCGACAGCTCGCAGCTTG CGGCATTACTCTCTATACTGTGGGGTGTGAACCCGCCATTTCCACCTATG AGAATTGTAAGGATATATTGATCTTTATGGCGGAGGCAACGGGAGGGCAG GCCTTGGTGCTGGAGAGTGCGAGTCTGTTGGCTTCTGTTATTTTAGCGGG GGCGCAGGAGGAGGTGGGGCTGACACGACTGGAGAGGGAGGTGAAGGAGG TGATGAGGGAGGCAGGGAGGGAGGCAGGGGAAGAGGAGGATGAAGATGTG TGGGTGGCGAGGGTTAAGGAGGCGTTGAGGAGGAAAGGGACTAGAACAAG GCAGTTAAAGACAAACATGAGGAGGATGACGTCAGTTCAAACTGAGGTGA TTGCGTCATGCTCTTCCCTTGAGGAGGCGAAGAGGAGGTTGGGGAGCGAG AGAGCGCGGGAGGTAGAGGAGGAAAACGGGGAGAGGGTATCGATATCGAC GGGCCTGTCGAGTAGGTCGTTTGTGTCTGCGGCGGAGGCGGTTGCCCCTG TAGACATGCGTTGGGAAGCGGACAATTCGTCGTCAATGCCGACTTCAGGT GTAGGATGGGAAGGAGAGAGGGAGGGAGGAAAGGGCGGAGGACGAGGTTG CGGACGACTCATGGTCCAAGACCTCATTTCCCGACGGGGAGGCGGTGGTA TTATTTCCGCTCCTACTGTTCGTGCTGCTCCTACTCATGCTGCTGCTACC ACTACGACTACTGTTGGTGCAGCCACCCCTACTTCTACTGCTGCTACTGA GATACCGTCCGCAGAAGCCACGCCGAAAAGAGGTGGTCTTCCTCGGAGCA GGGAGAAGGAGCTTTCGGCCTCCCACACTGAAGCGACCGATACATTTCCA CGGACTGTGGTTCCTACTCCATGCTCCTCTTCCGTCTCCTCCTCCTCCTC CCCCTTCCTCCCGGCCCCCCTCTTCTCCCCCACGCATACGTACTCGCTTA CGGCATGTGCCACGGTTGGTGCTGGAGGAGGAGGAGGAAGGGCTGGTGGG CGGGAGGGAGGGAGGGCCGAGGTGGCGGAAGAGGAGATTTCGATCGATCA AATTCGACGGTTGGTCCGCAAAGCCCAGAGCCTTCAAAGGGAGTATAGGT GATGGTGCAGCCTGTCTCCCACCTTCCTCCCCTGGCTCTTCCACTCCTTT TTCCCCCCCCTCAAGGTTGGCCTGCTCGTTATCGATGTTACCGCCTCTGA CTCCCTCGTGTCACTGCCATGGCCCCACGGTCTGATCATGGCAGGAAACA ATAAGCCTCACCCATAAGGGACCAAACGACTCGTTCGAGGCCTTTCAATC TCTCTTCGAGCATTTGGGAAAAGAGTGTGCTGGATTGAGTTAAGCAGAGG GAGGAAACAGACACACCTTACACACCTCTACGAAAAGGGAACTCTCCCAA CCCCGACACACACCATTAATAAGCAGCCGCACGCTCCGCTTACGCGCCTG GCCGCACTGCCCTAATAAGAGAATGCAAGCCTTCGTGACCAGCATCTTCT GTCGCACCAAGTCTGACATCTCCAGCTCCACGTCCGCCTCCTGTTAGGGC TGGGGTTAGGGTTAAGGGTTTTAGGGGGGAGGGCAAAGCTATCGGGCAGG AAAAATTGTTTCAATCTGTTGCCAAAATTGACAAGCAAAGATTAAAAAAA AAAAGGCGCCAAAGCAACTCCTCAACCTCACAAGAAGGCGATACACATGT CTACACAATATTTTGTTCATCAAGTGCAAAACCGTGTGTATTTTTGCGGA GGGAAGGGGAAAGGGATCTTGATATCCCTCTCGCGCCTCAATCTTTCGCT TTCAGCCGCTCCCACAAGCCCTGAGTCCACACAGGCCCAAAACTTACAGA TCCGCTGACACTTCAGTCATGCCATTCCTGATGAGGAAATGACACCACAA CTGATACATCTCTTCATACACTCTAAGACATTTACAGAGAAAGAAGACCC CATCTTCTCTCATCTTCTCTCACTCAATTCATCCCTCTCCATCCCCTCCT CCCTTCCATTCTGCGATTCCTATCATGGGCGAGCCCCATACAGTGACACT GCTGACGCCCTTGCCCCCGTTGCTCCTTTTTCCCCTCCTCTCCCCATGGC CTTAGCATATATACTCCATTCTGTCAATCCATGAATCCACATGTCTGCCT CTCCGGGCGACTCAGCCTTCAATCGCAATGTCGGCTCCCTTTCCTTCGCC CCTGCCCCCCCCATCTTCCCTCCTCCCCTCACGCAAAACACCTCAAATTT CCTTGGATCCCTTTTTTCGCCCACCTTAGGTATCTCGTAACGCACTCCTT CCACTTCACGCATGTCCATCGACCCCTGCAGAAGACTATTCCCTCCCTCC CTTCCTCCCTCCCGCCCTACCCCTTCTCC back to topprotein sequence of NO05G00240.1 >NO05G00240.1-protein ID=NO05G00240.1-protein|Name=NO05G00240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=626bp MQAFVTSIFCRTKSDISSSTSASSTAVSDKPPRPPIPITVTDVNSTTDTY SFSFPKVLNKEEDEEGEDEEDDEDTVATALSNACITESAKEKEAMKDVPQ LDLVFVVDSTSSMDAYIRAAQESIHGIITRLACDDGVSVRFALISYRDHA PQDSSYVTRVFPFTSHLPTITDNVNSITAEGGGDGPEAMADALYDLLHLE WRSSLPPSPSSSPSIQTSKVAVLIADAPPHGLGEREDGFPNGCPLHHDPL ALTRQLAACGITLYTVGCEPAISTYENCKDILIFMAEATGGQALVLESAS LLASVILAGAQEEVGLTRLEREVKEVMREAGREAGEEEDEDVWVARVKEA LRRKGTRTRQLKTNMRRMTSVQTEVIASCSSLEEAKRRLGSERAREVEEE NGERVSISTGLSSRSFVSAAEAVAPVDMRWEADNSSSMPTSGVGWEGERE GGKGGGRGCGRLMVQDLISRRGGGGIISAPTVRAAPTHAAATTTTTVGAA TPTSTAATEIPSAEATPKRGGLPRSREKELSASHTEATDTFPRTVVPTPC SSSVSSSSSPFLPAPLFSPTHTYSLTACATVGAGGGGGRAGGREGGRAEV AEEEISIDQIRRLVRKAQSLQREYR* back to topmRNA from alignment at chr5:102201..105857- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G00240.1 ID=NO05G00240.1|Name=NO05G00240.1|organism=Nannochloropsis oceanica|type=mRNA|length=3657bp|location=Sequence derived from alignment at chr5:102201..105857- (Nannochloropsis oceanica) AACCCCGACACACACCATTAATAAGCAGCCGCACGCTCCGCTTACGCGCC
TGGCCGCACTGCCCTAATAAGAGAATGCAAGCCTTCGTGACCAGCATCTT
CTGTCGCACCAAGTCTGACATCTCCAGCTCCACGTCCGCCTCCTCCACTG
CCGTGTCTGACAAACCTCCTCGGCCACCCATTCCCATCACCGTCACAGAC
GTAAATTCGACGACAGGTGAGTACATGCGCCTTTATTATATATCCTTTTA
TGCGTTTTTTCATCCCTTTCACCTTATCCTTCCTCCCAACAACAGATACG
TATTCTTTTTCCTTTCCTAAAGTGTTGAACAAGGAGGAGGACGAGGAGGG
GGAGGACGAGGAGGACGACGAAGATACTGTGGCTACAGCGCTCAGCAATG
CGTGCATCACCGAAAGTGCGAAGGAAAAGGAAGCAATGAAGGATGTCCCG
CAGCTTGACCTGGTATTTGTGGTACGTGCATGGTTGAGATAAACATGTGT
GTGCGTTTGTGGGGGAGGGAGGAAAGACAGGCAAAAAAAGGTACTGGCGA
AGAAGGCAGAAAAAAGGGCTTTCCTCCTTCTGTATTGAAACCTGCGTCTC
GCTCGACCCTCCCCCTCTCCCTCACTCACAGGTTGACTCTACGAGCTCAA
TGGATGCCTACATCCGAGCAGCGCAAGAGAGCATCCACGGCATCATCACC
CGCCTGGCCTGCGATGACGGGGTCTCTGTCCGCTTTGCTCTTATCTCTTA
CCGAGATCATGCTCCACAGGTAGTGTGTGTGTTTCAGTCCGTAATAAAAT
GTGTTGGGAGAAGAGAGAGGGTATATATATATGCGTATCTCAGCATTCTC
CACCTCTCGCCTGTAGCAAGAGCCTCTTCCTCTGTTGTGTCCTTATTCTT
CCTGCTCACCCTCCCTGCCTGCCTCCCTCCCTCCCTCCTTATTTCCCTCC
CTTCCTAGGACTCTTCCTACGTGACGCGGGTCTTCCCATTCACCTCCCAC
CTACCAACCATCACCGACAACGTAAACAGCATAACGGCTGAAGGCGGAGG
TGACGGTCCCGAAGCCATGGCGGACGCCCTGTACGACCTCCTTCATCTTG
AATGGCGCTCCTCCCTCCCTCCCTCTCCTTCCTCCTCCCCTTCGATCCAG
ACAAGCAAAGTCGCTGTGCTCATTGCCGATGCTCCCCCTCACGGATTGGG
AGAGCGTGAAGACGGTTTTCCAAATGGCTGCCCTCTCCATCATGACCCTC
TCGCTTTGACTCGACAGCTCGCAGCTTGCGGCATTACTCTCTATACTGTG
GGGTGTGAACCCGCCATTTCCACCTATGAGAATTGTAAGGATATATTGAT
CTTTATGGCGGAGGCAACGGGAGGGCAGGCCTTGGTGCTGGAGAGTGCGA
GTCTGTTGGCTTCTGTTATTTTAGCGGGGGCGCAGGAGGAGGTGGGGCTG
ACACGACTGGAGAGGGAGGTGAAGGAGGTGATGAGGGAGGCAGGGAGGGA
GGCAGGGGAAGAGGAGGATGAAGATGTGTGGGTGGCGAGGGTTAAGGAGG
CGTTGAGGAGGAAAGGGACTAGAACAAGGCAGTTAAAGACAAACATGAGG
AGGATGACGTCAGTTCAAACTGAGGTGATTGCGTCATGCTCTTCCCTTGA
GGAGGCGAAGAGGAGGTTGGGGAGCGAGAGAGCGCGGGAGGTAGAGGAGG
AAAACGGGGAGAGGGTATCGATATCGACGGGCCTGTCGAGTAGGTCGTTT
GTGTCTGCGGCGGAGGCGGTTGCCCCTGTAGACATGCGTTGGGAAGCGGA
CAATTCGTCGTCAATGCCGACTTCAGGTGTAGGATGGGAAGGAGAGAGGG
AGGGAGGAAAGGGCGGAGGACGAGGTTGCGGACGACTCATGGTCCAAGAC
CTCATTTCCCGACGGGGAGGCGGTGGTATTATTTCCGCTCCTACTGTTCG
TGCTGCTCCTACTCATGCTGCTGCTACCACTACGACTACTGTTGGTGCAG
CCACCCCTACTTCTACTGCTGCTACTGAGATACCGTCCGCAGAAGCCACG
CCGAAAAGAGGTGGTCTTCCTCGGAGCAGGGAGAAGGAGCTTTCGGCCTC
CCACACTGAAGCGACCGATACATTTCCACGGACTGTGGTTCCTACTCCAT
GCTCCTCTTCCGTCTCCTCCTCCTCCTCCCCCTTCCTCCCGGCCCCCCTC
TTCTCCCCCACGCATACGTACTCGCTTACGGCATGTGCCACGGTTGGTGC
TGGAGGAGGAGGAGGAAGGGCTGGTGGGCGGGAGGGAGGGAGGGCCGAGG
TGGCGGAAGAGGAGATTTCGATCGATCAAATTCGACGGTTGGTCCGCAAA
GCCCAGAGCCTTCAAAGGGAGTATAGGTGATGGTGCAGCCTGTCTCCCAC
CTTCCTCCCCTGGCTCTTCCACTCCTTTTTCCCCCCCCTCAAGGTTGGCC
TGCTCGTTATCGATGTTACCGCCTCTGACTCCCTCGTGTCACTGCCATGG
CCCCACGGTCTGATCATGGCAGGAAACAATAAGCCTCACCCATAAGGGAC
CAAACGACTCGTTCGAGGCCTTTCAATCTCTCTTCGAGCATTTGGGAAAA
GAGTGTGCTGGATTGAGTTAAGCAGAGGGAGGAAACAGACACACCTTACA
CACCTCTACGAAAAGGGAACTCTCCCAACCCCGACACACACCATTAATAA
GCAGCCGCACGCTCCGCTTACGCGCCTGGCCGCACTGCCCTAATAAGAGA
ATGCAAGCCTTCGTGACCAGCATCTTCTGTCGCACCAAGTCTGACATCTC
CAGCTCCACGTCCGCCTCCTGTTAGGGCTGGGGTTAGGGTTAAGGGTTTT
AGGGGGGAGGGCAAAGCTATCGGGCAGGAAAAATTGTTTCAATCTGTTGC
CAAAATTGACAAGCAAAGATTAAAAAAAAAAAGGCGCCAAAGCAACTCCT
CAACCTCACAAGAAGGCGATACACATGTCTACACAATATTTTGTTCATCA
AGTGCAAAACCGTGTGTATTTTTGCGGAGGGAAGGGGAAAGGGATCTTGA
TATCCCTCTCGCGCCTCAATCTTTCGCTTTCAGCCGCTCCCACAAGCCCT
GAGTCCACACAGGCCCAAAACTTACAGATCCGCTGACACTTCAGTCATGC
CATTCCTGATGAGGAAATGACACCACAACTGATACATCTCTTCATACACT
CTAAGACATTTACAGAGAAAGAAGACCCCATCTTCTCTCATCTTCTCTCA
CTCAATTCATCCCTCTCCATCCCCTCCTCCCTTCCATTCTGCGATTCCTA
TCATGGGCGAGCCCCATACAGTGACACTGCTGACGCCCTTGCCCCCGTTG
CTCCTTTTTCCCCTCCTCTCCCCATGGCCTTAGCATATATACTCCATTCT
GTCAATCCATGAATCCACATGTCTGCCTCTCCGGGCGACTCAGCCTTCAA
TCGCAATGTCGGCTCCCTTTCCTTCGCCCCTGCCCCCCCCATCTTCCCTC
CTCCCCTCACGCAAAACACCTCAAATTTCCTTGGATCCCTTTTTTCGCCC
ACCTTAGGTATCTCGTAACGCACTCCTTCCACTTCACGCATGTCCATCGA
CCCCTGCAGAAGACTATTCCCTCCCTCCCTTCCTCCCTCCCGCCCTACCC
CTTCTCC back to topCoding sequence (CDS) from alignment at chr5:102201..105857- >NO05G00240.1 ID=NO05G00240.1|Name=NO05G00240.1|organism=Nannochloropsis oceanica|type=CDS|length=1878bp|location=Sequence derived from alignment at chr5:102201..105857- (Nannochloropsis oceanica) ATGCAAGCCTTCGTGACCAGCATCTTCTGTCGCACCAAGTCTGACATCTC CAGCTCCACGTCCGCCTCCTCCACTGCCGTGTCTGACAAACCTCCTCGGC CACCCATTCCCATCACCGTCACAGACGTAAATTCGACGACAGATACGTAT TCTTTTTCCTTTCCTAAAGTGTTGAACAAGGAGGAGGACGAGGAGGGGGA GGACGAGGAGGACGACGAAGATACTGTGGCTACAGCGCTCAGCAATGCGT GCATCACCGAAAGTGCGAAGGAAAAGGAAGCAATGAAGGATGTCCCGCAG CTTGACCTGGTATTTGTGGTTGACTCTACGAGCTCAATGGATGCCTACAT CCGAGCAGCGCAAGAGAGCATCCACGGCATCATCACCCGCCTGGCCTGCG ATGACGGGGTCTCTGTCCGCTTTGCTCTTATCTCTTACCGAGATCATGCT CCACAGGACTCTTCCTACGTGACGCGGGTCTTCCCATTCACCTCCCACCT ACCAACCATCACCGACAACGTAAACAGCATAACGGCTGAAGGCGGAGGTG ACGGTCCCGAAGCCATGGCGGACGCCCTGTACGACCTCCTTCATCTTGAA TGGCGCTCCTCCCTCCCTCCCTCTCCTTCCTCCTCCCCTTCGATCCAGAC AAGCAAAGTCGCTGTGCTCATTGCCGATGCTCCCCCTCACGGATTGGGAG AGCGTGAAGACGGTTTTCCAAATGGCTGCCCTCTCCATCATGACCCTCTC GCTTTGACTCGACAGCTCGCAGCTTGCGGCATTACTCTCTATACTGTGGG GTGTGAACCCGCCATTTCCACCTATGAGAATTGTAAGGATATATTGATCT TTATGGCGGAGGCAACGGGAGGGCAGGCCTTGGTGCTGGAGAGTGCGAGT CTGTTGGCTTCTGTTATTTTAGCGGGGGCGCAGGAGGAGGTGGGGCTGAC ACGACTGGAGAGGGAGGTGAAGGAGGTGATGAGGGAGGCAGGGAGGGAGG CAGGGGAAGAGGAGGATGAAGATGTGTGGGTGGCGAGGGTTAAGGAGGCG TTGAGGAGGAAAGGGACTAGAACAAGGCAGTTAAAGACAAACATGAGGAG GATGACGTCAGTTCAAACTGAGGTGATTGCGTCATGCTCTTCCCTTGAGG AGGCGAAGAGGAGGTTGGGGAGCGAGAGAGCGCGGGAGGTAGAGGAGGAA AACGGGGAGAGGGTATCGATATCGACGGGCCTGTCGAGTAGGTCGTTTGT GTCTGCGGCGGAGGCGGTTGCCCCTGTAGACATGCGTTGGGAAGCGGACA ATTCGTCGTCAATGCCGACTTCAGGTGTAGGATGGGAAGGAGAGAGGGAG GGAGGAAAGGGCGGAGGACGAGGTTGCGGACGACTCATGGTCCAAGACCT CATTTCCCGACGGGGAGGCGGTGGTATTATTTCCGCTCCTACTGTTCGTG CTGCTCCTACTCATGCTGCTGCTACCACTACGACTACTGTTGGTGCAGCC ACCCCTACTTCTACTGCTGCTACTGAGATACCGTCCGCAGAAGCCACGCC GAAAAGAGGTGGTCTTCCTCGGAGCAGGGAGAAGGAGCTTTCGGCCTCCC ACACTGAAGCGACCGATACATTTCCACGGACTGTGGTTCCTACTCCATGC TCCTCTTCCGTCTCCTCCTCCTCCTCCCCCTTCCTCCCGGCCCCCCTCTT CTCCCCCACGCATACGTACTCGCTTACGGCATGTGCCACGGTTGGTGCTG GAGGAGGAGGAGGAAGGGCTGGTGGGCGGGAGGGAGGGAGGGCCGAGGTG GCGGAAGAGGAGATTTCGATCGATCAAATTCGACGGTTGGTCCGCAAAGC CCAGAGCCTTCAAAGGGAGTATAGGTGA back to top
|