Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr5 genome chr5:102201..105857 -
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G00240.1 vs.
Match: OLP84513.1 (Alpha-protein kinase vwkA [Symbiodinium microadriaticum])
HSP 1 Score: 236.1 bits (601), Expect = 2.900e-58
Identity = 145/331 (43.81%), Postives = 194/331 (58.61%), Query Frame = 0
Query: 100 QLDLVFVVDSTSSMDAYIRAAQESIHGIITRLACDDGVSVRFALISYRDHAPQDSSYVTRVFPFTSHLPTITDNVNSITAEGGGDGPEAMADALYDLLHLEWRSSLPPSPSSSPSIQTSKVAVLIADAPPHGLGEREDGFPNGCPLHHDPLALTRQLAACGITLYTVGCEPAISTYENCKDILIFMAEATGGQALVLESASLLASVILAGAQEEVGLTRLEREVKEVM-------REAGREAGEEEDEDVWVARVKEALRRKGTRTRQLKT--NMRRMTSVQTEVIASCSSLEEAKRRLGSER-AREVEEENGERVSISTGLSSRSFVSAA 421
+LDL F+ D T SM YI+AAQ++I I+ +++ G V+F LI YRDH PQD +YVT+ PFT+ L ++ V+S+ A GGGDGPEA+ LYD LHL WR + ++K+ VLIADAPPHGL DGFPNG P DPL + R +AA GIT Y+VGCEPA+ +Y + +D L +AE TGGQA+ L SA+LLA VI+ G+ EE+ L +L+R+V+E + R AGRE EE R E LR G R+ Q++T +M+ + A SL K LG E REV G + GLS + + A
Sbjct: 46 ELDLCFICDCTGSMGQYIKAAQDNIQSIVAKISQKHGAKVQFGLICYRDHPPQDKTYVTKCHPFTTDLAQMSQYVDSMKASGGGDGPEAVTAGLYDALHLPWRPN------------STKICVLIADAPPHGLEPAGDGFPNGDPDGRDPLDILRSMAAHGITAYSVGCEPALGSYAHARDFLCTVAEITGGQAVALSSAALLADVIINGSVEELALAKLQRKVEEEVLKVQVQARSAGREISTEEAS----TRACENLRAGGMRSVQMETDGHMKHANRACWGLDAEKRSLAHVKEALGREALGREVSPHKGYAMGRKLGLSGTATTAPA 360
The following BLAST results are available for this feature:
BLAST of NO05G00240.1 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
500 1000 1500 2000 2500 3000 Expect = 2.90e-58 / Id = 43.81 Sequence OLP84513.1
Match Name E-value Identity Description
OLP84513.1 2.900e-58 43.81 Alpha-protein kinase vwkA [Symbiodinium microadria... [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO05G00240.1 ID=NO05G00240.1|Name=NO05G00240.1|organism=Nannochloropsis oceanica|type=mRNA|length=3229bp back to top protein sequence of NO05G00240.1
>NO05G00240.1-protein ID=NO05G00240.1-protein|Name=NO05G00240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=626bp back to top mRNA from alignment at chr5:102201..105857-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G00240.1 ID=NO05G00240.1|Name=NO05G00240.1|organism=Nannochloropsis oceanica|type=mRNA|length=3657bp|location=Sequence derived from alignment at chr5:102201..105857- (Nannochloropsis oceanica)ATGCAAGCCTTCGTGACCAGCATCTT
CTGTCGCACCAAGTCTGACATCTCCAGCTCCACGTCCGCCTCCTCCACTG
CCGTGTCTGACAAACCTCCTCGGCCACCCATTCCCATCACCGTCACAGAC
GTAAATTCGACGACAG GTGAGTACATGCGCCTTTATTATATATCCTTTTA
TGCGTTTTTTCATCCCTTTCACCTTATCCTTCCTCCCAACAACAGATACG
TATTCTTTTTCCTTTCCTAAAGTGTTGAACAAGGAGGAGGACGAGGAGGG
GGAGGACGAGGAGGACGACGAAGATACTGTGGCTACAGCGCTCAGCAATG
CGTGCATCACCGAAAGTGCGAAGGAAAAGGAAGCAATGAAGGATGTCCCG
CAGCTTGACCTGGTATTTGTG GTACGTGCATGGTTGAGATAAACATGTGT
GTGCGTTTGTGGGGGAGGGAGGAAAGACAGGCAAAAAAAGGTACTGGCGA
AGAAGGCAGAAAAAAGGGCTTTCCTCCTTCTGTATTGAAACCTGCGTCTC
GCTCGACCCTCCCCCTCTCCCTCACTCACAGGTTGACTCTACGAGCTCAA
TGGATGCCTACATCCGAGCAGCGCAAGAGAGCATCCACGGCATCATCACC
CGCCTGGCCTGCGATGACGGGGTCTCTGTCCGCTTTGCTCTTATCTCTTA
CCGAGATCATGCTCCACAG GTAGTGTGTGTGTTTCAGTCCGTAATAAAAT
GTGTTGGGAGAAGAGAGAGGGTATATATATATGCGTATCTCAGCATTCTC
CACCTCTCGCCTGTAGCAAGAGCCTCTTCCTCTGTTGTGTCCTTATTCTT
CCTGCTCACCCTCCCTGCCTGCCTCCCTCCCTCCCTCCTTATTTCCCTCC
CTTCCTAGGACTCTTCCTACGTGACGCGGGTCTTCCCATTCACCTCCCAC
CTACCAACCATCACCGACAACGTAAACAGCATAACGGCTGAAGGCGGAGG
TGACGGTCCCGAAGCCATGGCGGACGCCCTGTACGACCTCCTTCATCTTG
AATGGCGCTCCTCCCTCCCTCCCTCTCCTTCCTCCTCCCCTTCGATCCAG
ACAAGCAAAGTCGCTGTGCTCATTGCCGATGCTCCCCCTCACGGATTGGG
AGAGCGTGAAGACGGTTTTCCAAATGGCTGCCCTCTCCATCATGACCCTC
TCGCTTTGACTCGACAGCTCGCAGCTTGCGGCATTACTCTCTATACTGTG
GGGTGTGAACCCGCCATTTCCACCTATGAGAATTGTAAGGATATATTGAT
CTTTATGGCGGAGGCAACGGGAGGGCAGGCCTTGGTGCTGGAGAGTGCGA
GTCTGTTGGCTTCTGTTATTTTAGCGGGGGCGCAGGAGGAGGTGGGGCTG
ACACGACTGGAGAGGGAGGTGAAGGAGGTGATGAGGGAGGCAGGGAGGGA
GGCAGGGGAAGAGGAGGATGAAGATGTGTGGGTGGCGAGGGTTAAGGAGG
CGTTGAGGAGGAAAGGGACTAGAACAAGGCAGTTAAAGACAAACATGAGG
AGGATGACGTCAGTTCAAACTGAGGTGATTGCGTCATGCTCTTCCCTTGA
GGAGGCGAAGAGGAGGTTGGGGAGCGAGAGAGCGCGGGAGGTAGAGGAGG
AAAACGGGGAGAGGGTATCGATATCGACGGGCCTGTCGAGTAGGTCGTTT
GTGTCTGCGGCGGAGGCGGTTGCCCCTGTAGACATGCGTTGGGAAGCGGA
CAATTCGTCGTCAATGCCGACTTCAGGTGTAGGATGGGAAGGAGAGAGGG
AGGGAGGAAAGGGCGGAGGACGAGGTTGCGGACGACTCATGGTCCAAGAC
CTCATTTCCCGACGGGGAGGCGGTGGTATTATTTCCGCTCCTACTGTTCG
TGCTGCTCCTACTCATGCTGCTGCTACCACTACGACTACTGTTGGTGCAG
CCACCCCTACTTCTACTGCTGCTACTGAGATACCGTCCGCAGAAGCCACG
CCGAAAAGAGGTGGTCTTCCTCGGAGCAGGGAGAAGGAGCTTTCGGCCTC
CCACACTGAAGCGACCGATACATTTCCACGGACTGTGGTTCCTACTCCAT
GCTCCTCTTCCGTCTCCTCCTCCTCCTCCCCCTTCCTCCCGGCCCCCCTC
TTCTCCCCCACGCATACGTACTCGCTTACGGCATGTGCCACGGTTGGTGC
TGGAGGAGGAGGAGGAAGGGCTGGTGGGCGGGAGGGAGGGAGGGCCGAGG
TGGCGGAAGAGGAGATTTCGATCGATCAAATTCGACGGTTGGTCCGCAAA
GCCCAGAGCCTTCAAAGGGAGTATAGGTGA back to top Coding sequence (CDS) from alignment at chr5:102201..105857-
>NO05G00240.1 ID=NO05G00240.1|Name=NO05G00240.1|organism=Nannochloropsis oceanica|type=CDS|length=1878bp|location=Sequence derived from alignment at chr5:102201..105857- (Nannochloropsis oceanica) back to top