NO05G00130.1, NO05G00130.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G00130.1
Unique NameNO05G00130.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2552
Alignment locationchr5:55759..59286 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:55759..59286 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO05G00130.1 vs.
Match: EWM28384.1 (expulsion defective family member (exp-2) [Nannochloropsis gaditana])

HSP 1 Score: 640.2 bits (1650), Expect = 5.500e-180
Identity = 316/416 (75.96%), Postives = 362/416 (87.02%), Query Frame = 0
Query:  101 EDLADWRAEHSYRTIIFMTSDHMYYSFYAWLYGFVMCAATAISCIAFVLSTMPEFTYIPHNCKHPICVPGAPGAVCDQVICFPEPLPYLDKTETITLCLFIFDYLLRVCTVHAVPQRLIYWDGRRINEDTTRGKPQPSAASKTFHYLMHSHQVIDLLVILPFFLTYFISSVDVVHWRLLRITRVLRVLKLSRYSSGGELVWNTLKNSGPSLILLTLFTLVLCFVMGALVFYFEGGVYRVTPEHPEGAFYRPALEGGEEVTPFTSVPVSAYWVIVTATTVGYGDLYPTSGPGQFVAAASAYCGIVFLSLPIAIVVKQFNIAYDKDEDEKAVEEQLRKEEIEKQKANERPTAVSAAEAKWKRKHVRKLMEMREFIHEQMKQATPLFETMWEEFVAKHLLERLQEYE-RQPMRDGTQSV 516
            ED+ DWRAEH++RT++FMT+DHMYYS+YAWLYG VMC  T ISCIAFVLSTMP F Y P  C  PIC P  PGA CD+VIC+P P  YL +TE +TL LFIFDYL+R+ TVHAVPQRLIYWDGRRINED +RG  QPS   KTF Y +H+ QVIDLLVILP+ L Y IS+++++HWRLLRITRVLRVLKLSRY  GGELVWNTLKNSGPSL+LLTLFT+VL F+MGAL FY+EGG+++VT  HPEGAF+R ALEGGEEV+PFTSVPVSAYWVI+TATTVGYGDL+PTSGPG+FVAAASAYCGIVFLSLPIAIVVKQFNIAYDKD D+KAVEEQL+KEE EKQKA E PTA+SAAEAKWKRKHVRKL EMREFI  QM++ATP+FETMWEEFVAKHL+ERLQ++E   P + G++SV
Sbjct:   18 EDIDDWRAEHTWRTMVFMTADHMYYSYYAWLYGTVMCTVTGISCIAFVLSTMPRFNYTPSQCSRPICRPSDPGAECDRVICYPRPHHYLIQTELVTLILFIFDYLVRLITVHAVPQRLIYWDGRRINEDHSRGVAQPSPLEKTFRYAVHADQVIDLLVILPYLLNYVISTMNIMHWRLLRITRVLRVLKLSRYFDGGELVWNTLKNSGPSLMLLTLFTIVLTFIMGALAFYYEGGIFKVTAAHPEGAFFRRALEGGEEVSPFTSVPVSAYWVIITATTVGYGDLHPTSGPGRFVAAASAYCGIVFLSLPIAIVVKQFNIAYDKDADDKAVEEQLKKEEEEKQKAGEEPTALSAAEAKWKRKHVRKLTEMREFIRMQMEEATPIFETMWEEFVAKHLMERLQDHEGEMPRQRGSRSV 433          
The following BLAST results are available for this feature:
BLAST of NO05G00130.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28384.15.500e-18075.96expulsion defective family member (exp-2) [Nannoch... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G00130NO05G00130Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G00130.1NO05G00130.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G00130.1.cds1NO05G00130.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G00130.1.cds2NO05G00130.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G00130.1.cds3NO05G00130.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G00130.1.cds4NO05G00130.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G00130.1.cds5NO05G00130.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G00130.1.cds6NO05G00130.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G00130.1.cds7NO05G00130.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G00130.1 ID=NO05G00130.1|Name=NO05G00130.1|organism=Nannochloropsis oceanica|type=mRNA|length=2552bp
AGGAGCAGCACCTGCGGCAGCAGCAATATAAAGGTATTCACCACCATCAC
GATAAATAAAGCAAAAGCAATAGGAACATCGTCATCTACATCAGCAGAAG
CAGCTGCTGCTGCAGCAGCAACAGAAGTGATAATTCGACAAAGAGCGCCA
AGGGTAAGGGTGGTTGTCTTTTGCTGTGATTACCTAGGATATCCACGGGC
CGACAAAGTCATCCAAGGGAGGAGGAGATGAAGTACTCATATTAAGGGAA
TTATCACTAAAATTCGTCGTCGTCGATATATAGAAAGAGTGTAGGAAATC
TTTACAATCTAAAAGCATATGATGGGGACAGTACGCTAGAATGAATACAT
GTGTTCACATCCGAATATGCCCGACTGGTCAAACTAGACATATTAAAGGA
CAAAATGGGGTATTGAAGAGAGCTAATGAGCATCAAAGCCTGCTTTAAAT
GCGCGCGCGTACACACACACACACACATGTGTGACGTAGCAGAGAACACC
CTGGCAGGCGAAGTGAAGCAGCTGAGAGCGCGGTCATTTGATTGAGCAGT
ATAAGAGAGCCAAATGGAAAAAGCACCGCGGGCAACTACCTCCAAGAAAA
CATACGCATTATACGCTTTTTTTTATGTCGCCGCTTCCTGTCCTGCGTCA
ACCGAAATCCTCTTGAGCAATCATGCCGCCAGCCCCACTTCTCCGAGACC
AAATTCGACAAGGTCAAGATCAAGATCAAGTGTTGTTAATTAATTAACCG
ACCCACAATTACCCTTACCTCACACAACCAACTAATAGTAGGAATGTACG
CCACGCTTGGGGATCCTAGAGAAAAACACCCCCTAATCCTGCACGCGGCC
ACCTCTTCCTACATCGGCGGGGTGTCATCGCAGCGTTCCCCCCCCGGCAG
TGCGCGGGATGATGAAGAAGAGCGTGCAGAGCTGGGTGCATTGTCCGGCG
GGAAGCACAGCGAGAAGCATGTGCGGCTGCCCGCCGAAGGCGAGGAGGGA
GGGCAACAAGGCGAGGTGGGCAATGGGGTTAGAAAACGACGACCAAGCTT
TGTGCAGCAGATGACACGATCACTGTCACGAGTTTTGACACCGGAGGACC
TGGCCGACTGGCGCGCGGAGCATTCCTACCGCACGATCATCTTCATGACC
TCAGACCACATGTATTACTCGTTCTATGCCTGGCTCTATGGGTTCGTCAT
GTGCGCCGCCACGGCCATCTCCTGCATCGCTTTCGTCCTCTCCACCATGC
CCGAGTTCACTTACATCCCGCACAACTGCAAACACCCTATTTGTGTCCCG
GGTGCTCCAGGTGCGGTCTGCGACCAAGTAATTTGCTTCCCGGAGCCTCT
CCCCTACCTTGACAAGACCGAGACGATAACCCTCTGCCTTTTCATATTCG
ACTACCTCCTTCGAGTGTGCACCGTCCACGCCGTCCCTCAGCGCCTCATT
TACTGGGATGGCCGCCGTATCAACGAGGACACTACGCGGGGAAAGCCTCA
ACCCTCCGCGGCAAGCAAGACTTTTCACTACTTGATGCACTCGCACCAAG
TCATCGACCTGCTCGTCATCCTCCCCTTCTTCCTCACATACTTCATCTCG
TCGGTAGACGTGGTCCACTGGCGACTCCTCCGGATTACGCGGGTATTGCG
AGTGCTGAAACTAAGCCGGTATTCGTCCGGGGGCGAACTAGTGTGGAACA
CACTCAAGAACTCAGGTCCATCGCTGATACTGCTGACTCTCTTTACGCTT
GTTCTTTGCTTTGTGATGGGTGCGTTGGTGTTTTATTTCGAAGGCGGCGT
CTACCGGGTCACGCCCGAACACCCTGAGGGCGCGTTTTATCGCCCGGCCT
TAGAGGGAGGCGAAGAAGTCACCCCTTTCACGTCTGTCCCTGTGTCAGCT
TATTGGGTTATTGTCACTGCTACTACCGTCGGATACGGTGATCTCTATCC
TACTTCGGGCCCAGGACAATTCGTGGCTGCAGCTTCGGCCTACTGCGGCA
TCGTATTCCTCTCGTTGCCCATCGCCATCGTGGTCAAACAGTTTAACATC
GCTTACGACAAGGATGAAGACGAGAAGGCCGTCGAAGAGCAACTAAGAAA
AGAGGAGATCGAGAAGCAAAAGGCGAACGAGCGCCCTACCGCTGTGAGTG
CTGCAGAAGCGAAGTGGAAGAGGAAACACGTGCGGAAATTAATGGAAATG
CGGGAGTTTATTCACGAACAAATGAAGCAGGCAACCCCGCTTTTCGAGAC
GATGTGGGAGGAATTTGTTGCCAAGCACTTACTGGAACGCTTGCAGGAAT
ATGAAAGACAACCGATGCGGGACGGAACGCAATCTGTGTAGAGTGGGAAG
GAAAGAGAGAATGAGATAGCGTCCGATAGACTTGTTCATACCAAAGAAAG
AGAGGGGATCGCAGATAGCAGGGAAATGGACAGGTAGGATGGAGAAATTG
ATCCTCATTTTAAAAGATGATGAATGTGCAGGAGCGTGACAAGGAAACTG
AATGGAAAAAGAAGAAAGATGCAAAGGACAATGAAATCGATGGGCATATT
TT
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protein sequence of NO05G00130.1

>NO05G00130.1-protein ID=NO05G00130.1-protein|Name=NO05G00130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=516bp
MYATLGDPREKHPLILHAATSSYIGGVSSQRSPPGSARDDEEERAELGAL
SGGKHSEKHVRLPAEGEEGGQQGEVGNGVRKRRPSFVQQMTRSLSRVLTP
EDLADWRAEHSYRTIIFMTSDHMYYSFYAWLYGFVMCAATAISCIAFVLS
TMPEFTYIPHNCKHPICVPGAPGAVCDQVICFPEPLPYLDKTETITLCLF
IFDYLLRVCTVHAVPQRLIYWDGRRINEDTTRGKPQPSAASKTFHYLMHS
HQVIDLLVILPFFLTYFISSVDVVHWRLLRITRVLRVLKLSRYSSGGELV
WNTLKNSGPSLILLTLFTLVLCFVMGALVFYFEGGVYRVTPEHPEGAFYR
PALEGGEEVTPFTSVPVSAYWVIVTATTVGYGDLYPTSGPGQFVAAASAY
CGIVFLSLPIAIVVKQFNIAYDKDEDEKAVEEQLRKEEIEKQKANERPTA
VSAAEAKWKRKHVRKLMEMREFIHEQMKQATPLFETMWEEFVAKHLLERL
QEYERQPMRDGTQSV*
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mRNA from alignment at chr5:55759..59286-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G00130.1 ID=NO05G00130.1|Name=NO05G00130.1|organism=Nannochloropsis oceanica|type=mRNA|length=3528bp|location=Sequence derived from alignment at chr5:55759..59286- (Nannochloropsis oceanica)
AGGAGCAGCACCTGCGGCAGCAGCAATATAAAGGTATTCACCACCATCAC GATAAATAAAGCAAAAGCAATAGGAACATCGTCATCTACATCAGCAGAAG CAGCTGCTGCTGCAGCAGCAACAGAAGTGATAATTCGACAAAGAGCGCCA AGGGTAAGGGTGGTTGTCTTTTGCTGTGATTACCTAGGATATCCACGGGC CGACAAAGTCATCCAAGGGAGGAGGAGATGAAGTACTCATATTAAGGGAA TTATCACTAAAATTCGTCGTCGTCGATATATAGAAAGAGTGTAGGAAATC TTTACAATCTAAAAGCATATGATGGGGACAGTACGCTAGAATGAATACAT GTGTTCACATCCGAATATGCCCGACTGGTCAAACTAGACATATTAAAGGA CAAAATGGGGTATTGAAGAGAGCTAATGAGCATCAAAGCCTGCTTTAAAT GCGCGCGCGTACACACACACACACACATGTGTGACGTAGCAGAGAACACC CTGGCAGGCGAAGTGAAGCAGCTGAGAGCGCGGTCATTTGATTGAGCAGT ATAAGAGAGCCAAATGGAAAAAGCACCGCGGGCAACTACCTCCAAGAAAA CATACGCATTATACGCTTTTTTTTATGTCGCCGCTTCCTGTCCTGCGTCA ACCGAAATCCTCTTGAGCAATCATGCCGCCAGCCCCACTTCTCCGAGACC AAATTCGACAAGGTCAAGATCAAGATCAAGTGTTGTTAATTAATTAACCG ACCCACAATTACCCTTACCTCACACAACCAACTAATAGTAGGAATGTACG CCACGCTTGGGGATCCTAGAGAAAAACACCCGTAAGTTCTCTTTCTGCTT CTTTGTTTTGTCCCCACCATTATGTGAGCCTCTCTTATCCCCCCCTCCAC TTTATTAGCCTAATCCTGCACGCGGCCACCTCTTCCTACATCGGCGGGGT GTCATCGCAGCGTTCCCCCCCCGGCAGTGCGCGGGATGATGAAGAAGAGC GTGCAGAGGTGAGCATGGAGAGTAAGAGGGCGACAGTTGGAAATGCGCAG TATAGATGAAAATGACCGCCACCGTTACATCCACGTGCTCCCTGTGTGTC TTAATCTGCCTGTGTTAAAATGAGAAGTGTAAGCCATGGCATCATACTTT CCTCCCCCCCATTTACTCATTTCGTCCATATTTTAAACGGCACATCAAAG CTGGGTGCATTGTCCGGCGGGAAGCACAGCGAGAAGCATGTGCGGCTGCC CGCCGAAGGCGAGGAGGGAGGGCAACAAGGCGAGGTGGGCAATGGGGTTA GAAAACGACGACCAAGCTTTGTGCAGCAGATGACACGATCACTGTCACGA GTTTTGACACCGGTACGTAGGGAAGGAGATAGGAAGGGAAAGTGGAAGGG GAAAAGGGGGGAAGGGGGGATTGGAGACCAAGCCTTTGAAATAGAAGTAA ACATACGCGTCGATAAAATATGAGTGAATTAAAACTGACAACAGAAATGT TTTACGCTTTCCTCTTCCTCCTTTCTTTTTTTCTTTTTTCGCAGGAGGAC CTGGCCGACTGGCGCGCGGAGCATTCCTACCGCACGATCATCTTCATGAC CTCAGACCACATGTATTACTCGTTCTATGTGCGTGTCAGGGGGAGGAAGT GGAAGCGAGAAGCGGGATTGTTGGGACTGTTTGTCCTCTCGGACAATTTA CCTGATTTGCCTCACCTCGTCCCGTCTTTCCTGTCCCTCTTATCAGGCCT GGCTCTATGGGTTCGTCATGTGCGCCGCCACGGCCATCTCCTGCATCGCT TTCGTCCTCTCCACCATGCCCGAGTTCACTTACATCCCGCACAACTGCAA ACACCCTATTTGTGTCCCGGGTGCTCCAGGTGCGGTCTGCGACCAAGTAA TTTGCTTCCCGGAGCCTCTCCCCTACCTTGACAAGACCGAGACGATAACC CTCTGCCTTTTCATATTCGACTACCTCCTTCGAGTGTGCACCGTCCACGC CGTCCCTCAGCGCCTCATTTACTGGGATGGCCGCCGTATCAACGAGGACA CTACGGTACGTCCATCACCCTCCTGCTGGCCCTCTCTCTTTATCTCATTG GATTCTTCAACACCCCTCCCTCCCTCCTTTTCTCTTTCCCCACACTACTT ACTGCGGAGTGGGGAAACCACGACCACCCCATTATCTCGAGGCAGGCCTA AGACTGAATTATTGACCTGCTGCTCACCACATCTGAAAATCTCCCTCTCT CCCTTCCTCGTTTACTTGTTCAGCGGGGAAAGCCTCAACCCTCCGCGGCA AGCAAGACTTTTCACTACTTGATGCACTCGCACCAAGTCATCGACCTGCT CGTCATCCTCCCCTTCTTCCTCACATACTTCATCTCGTCGGTAGACGTGG TCCACTGGCGACTCCTCCGGATTACGCGGTAAGGAGCGAGGGAGGGAGGG AGGGAAGGGAGGAAGGGGAGACGGAGCAAGGAATAAATGTCTACTTTCTG TGATGAAATTGGGGTGAATTAGGGGAGCGAATACGAGAAGAGACAAATGA ATTAAAGAAAGGAAGGATTATTCAGACACCACTAATGGATATATTGGATA TCACACGAAACAATCAGGGTATTGCGAGTGCTGAAACTAAGCCGGTATTC GTCCGGGGGCGAACTAGTGTGGAACACACTCAAGAACTCAGGTCCATCGC TGATACTGCTGACTCTCTTTACGCTTGTTCTTTGCTTTGTGATGGGTGCG TTGGTGTTTTATTTCGAAGGCGGCGTCTACCGGGTCACGCCCGAACACCC TGAGGGCGCGTTTTATCGCCCGGCCTTAGAGGGAGGCGAAGAAGTCACCC CTTTCACGTCTGTCCCTGTGTCAGCTTATTGGGTTATTGTCACTGCTACT ACCGTCGGATACGGTGATCTCTATCCTACTTCGGGCCCAGGACAATTCGT GGCTGCAGCTTCGGCCTACTGCGGCATCGTATTCCTCTCGTTGCCCATCG CCATCGTGGTCAAACAGTTTAACATCGCTTACGACAAGGATGAAGACGAG AAGGCCGTCGAAGAGCAACTAAGAAAAGAGGAGATCGAGAAGCAAAAGGC GAACGAGCGCCCTACCGCTGTGAGTGCTGCAGAAGCGAAGTGGAAGAGGA AACACGTGCGGAAATTAATGGAAATGCGGGAGTTTATTCACGAACAAATG AAGCAGGCAACCCCGCTTTTCGAGACGATGTGGGAGGAATTTGTTGCCAA GCACTTACTGGAACGCTTGCAGGAATATGAAAGACAACCGATGCGGGACG GAACGCAATCTGTGTAGAGTGGGAAGGAAAGAGAGAATGAGATAGCGTCC GATAGACTTGTTCATACCAAAGAAAGAGAGGGGATCGCAGATAGCAGGGA AATGGACAGGTAGGATGGAGAAATTGATCCTCATTTTAAAAGATGATGAA TGTGCAGGAGCGTGACAAGGAAACTGAATGGAAAAAGAAGAAAGATGCAA AGGACAATGAAATCGATGGGCATATTTT
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Coding sequence (CDS) from alignment at chr5:55759..59286-

>NO05G00130.1 ID=NO05G00130.1|Name=NO05G00130.1|organism=Nannochloropsis oceanica|type=CDS|length=1548bp|location=Sequence derived from alignment at chr5:55759..59286- (Nannochloropsis oceanica)
ATGTACGCCACGCTTGGGGATCCTAGAGAAAAACACCCCCTAATCCTGCA
CGCGGCCACCTCTTCCTACATCGGCGGGGTGTCATCGCAGCGTTCCCCCC
CCGGCAGTGCGCGGGATGATGAAGAAGAGCGTGCAGAGCTGGGTGCATTG
TCCGGCGGGAAGCACAGCGAGAAGCATGTGCGGCTGCCCGCCGAAGGCGA
GGAGGGAGGGCAACAAGGCGAGGTGGGCAATGGGGTTAGAAAACGACGAC
CAAGCTTTGTGCAGCAGATGACACGATCACTGTCACGAGTTTTGACACCG
GAGGACCTGGCCGACTGGCGCGCGGAGCATTCCTACCGCACGATCATCTT
CATGACCTCAGACCACATGTATTACTCGTTCTATGCCTGGCTCTATGGGT
TCGTCATGTGCGCCGCCACGGCCATCTCCTGCATCGCTTTCGTCCTCTCC
ACCATGCCCGAGTTCACTTACATCCCGCACAACTGCAAACACCCTATTTG
TGTCCCGGGTGCTCCAGGTGCGGTCTGCGACCAAGTAATTTGCTTCCCGG
AGCCTCTCCCCTACCTTGACAAGACCGAGACGATAACCCTCTGCCTTTTC
ATATTCGACTACCTCCTTCGAGTGTGCACCGTCCACGCCGTCCCTCAGCG
CCTCATTTACTGGGATGGCCGCCGTATCAACGAGGACACTACGCGGGGAA
AGCCTCAACCCTCCGCGGCAAGCAAGACTTTTCACTACTTGATGCACTCG
CACCAAGTCATCGACCTGCTCGTCATCCTCCCCTTCTTCCTCACATACTT
CATCTCGTCGGTAGACGTGGTCCACTGGCGACTCCTCCGGATTACGCGGG
TATTGCGAGTGCTGAAACTAAGCCGGTATTCGTCCGGGGGCGAACTAGTG
TGGAACACACTCAAGAACTCAGGTCCATCGCTGATACTGCTGACTCTCTT
TACGCTTGTTCTTTGCTTTGTGATGGGTGCGTTGGTGTTTTATTTCGAAG
GCGGCGTCTACCGGGTCACGCCCGAACACCCTGAGGGCGCGTTTTATCGC
CCGGCCTTAGAGGGAGGCGAAGAAGTCACCCCTTTCACGTCTGTCCCTGT
GTCAGCTTATTGGGTTATTGTCACTGCTACTACCGTCGGATACGGTGATC
TCTATCCTACTTCGGGCCCAGGACAATTCGTGGCTGCAGCTTCGGCCTAC
TGCGGCATCGTATTCCTCTCGTTGCCCATCGCCATCGTGGTCAAACAGTT
TAACATCGCTTACGACAAGGATGAAGACGAGAAGGCCGTCGAAGAGCAAC
TAAGAAAAGAGGAGATCGAGAAGCAAAAGGCGAACGAGCGCCCTACCGCT
GTGAGTGCTGCAGAAGCGAAGTGGAAGAGGAAACACGTGCGGAAATTAAT
GGAAATGCGGGAGTTTATTCACGAACAAATGAAGCAGGCAACCCCGCTTT
TCGAGACGATGTGGGAGGAATTTGTTGCCAAGCACTTACTGGAACGCTTG
CAGGAATATGAAAGACAACCGATGCGGGACGGAACGCAATCTGTGTAG
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Synonyms
Publications