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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr5 | genome | chr5:51980..55473 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G00120.3 vs.
Match: EWM27098.1 (lipase family protein [Nannochloropsis gaditana]) HSP 1 Score: 301.2 bits (770), Expect = 5.500e-78 Identity = 178/465 (38.28%), Postives = 245/465 (52.69%), Query Frame = 0
Query: 1 MQRSMDAEGVLCASGASWVAITKSMPPQLGRGSAAKRPVDPQGLFPEPLQDLR-PLPPTIPQNISDHERGTYYFLYRSLLNFYAVISLWKEGGKEGGVGQYPM---GLPEVWGEQRLYYLDDEEGGSEERKEEGAGEKVTSTAAKAEPGSSHWQAPLVMSFVRNETKGEEEGATLLVLIRGTVYANEWNLDFQYDYAAAEEFARFFPLEGEEGREEGRVHGGFFDAFSRLARPLKEEVGWLVGSNSSGKSLRKRPRGEEEDEKEDKEGGRRKGGALQRVLISGHSLGGSVGAMVALYIAEHFPEVQVDLVTFGAPNVGNAAVGRRFDKAVNNRHVTFTGVGGVGKAYYIGDWISQVPCGHLTACPLLESKVGGGADMSDDSPLPRTGSFNYTALGGAVPFTADDLGPHAAGWRTRSDLSSYRYSPVASHVCSYLCFTAPVVGDKEDRCQFTLDFWDTTAAPENRC 462
+Q +++ +G++C +G+ W+A+T+++PPQLG GS + PVDP P+PL+ L PLP +P + E+ TYYFLYR++ N YA + + Q PM LP W QR Y L G V A +P QAP +SF R++ +LV++RGT+Y+ EW +FQY +A E A + R G VH GFF F LA L ++ K A +V +GHSLGGSVGA++A Y P QV+LV+FGAPNVG+A F+ V NRH+ F+GVG G +Y+IGDWISQVPCG +T CPLL + S S++YTALGG+VPFT + + W RSD++ +RYSPVA+H CSY+CFTAP VGD D+C FTL+ ++ + RC
Sbjct: 110 IQAALNEDGLICLAGSLWLALTQTLPPQLGWGSKIRPPVDPLRELPQPLEVLSMPLPALVPTEKVEAEKPTYYFLYRAIQNLYAAVGA-NARSRGTDSAQEPMLNLALPPAWTNQREYTL------------RWTGSLV---AGVLQP-----QAPFAVSFTRDKE--------MLVVVRGTIYSAEWQRNFQYQHADPTETAAY--------RMPGGVHAGFFAVFKDLAEALVDD--------------------------------EIKRQAPSKVTFTGHSLGGSVGALLAFYTTHVLPRTQVELVSFGAPNVGDATFSSAFNARVRNRHLAFSGVGSEGDSYFIGDWISQVPCGAVTTCPLLTEMSSVDLNGSPSGQRQANESYSYTALGGSVPFTPAQM-QNGRTWALRSDVAGFRYSPVAAHTCSYMCFTAPSVGDAYDQCVFTLEL-GSSVDMDKRC 503
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G00120.3 ID=NO05G00120.3|Name=NO05G00120.3|organism=Nannochloropsis oceanica|type=mRNA|length=2530bp AGGCTTTGGCACACAATATAACCCAGATGCCACCATCACTGGCTTCGCAC AAACACAAACGACGGCGAGCACTAGGCGCTTCCCAGAGCAGCAGCATCAT ATGGGTCTGCCTCCTCGGCGCCGCTGCCGCTTCCCCTGCCCCCGCCACCA CAATCACGAATATGACAAGAAGAATAAGAAGGCATACTTTCGATGATCCT TCCATTACCTTCGCGACGGGGCCTACTTCTTCTTCTTCCTGGTCATCATG GTCTTCTTCGTTGTGGCCCGAACGCTGGAGCTGGCCCACTTCCACCACAA CCGCTTCCTCCTCTCCTGCGTCTACAGGGAGCGTGACGGCCGTACCCACC CCTTCTCCGACATACTCTAAACTTGACCAGGATAGGATCGACTATGGGGC GTATGTGCATGAGCATGGAGTGGTAAGAAACAAGAGATGGGGAAGGGAAG GCGGGAGGGAGTGATCGAGGGATGGTATAGGTCATTCATGATGTTCACCA CGCACATAGGACTTATGCTACTTTCTTAAATAGGCACCACAAGGGAACGA ATATCCATCCTGCCCCATGCAGAGAAGTATGGACGCCGAGGGAGTGTTGT GTGCCTCAGGCGCTTCCTGGGTCGCGATCACGAAATCCATGCCCCCCCAG CTTGGACGAGGCAGCGCCGCCAAACGCCCTGTCGACCCGCAAGGTCTCTT CCCGGAGCCGTTGCAGGACCTTCGCCCCCTCCCTCCCACCATCCCCCAAA ATATCTCCGACCACGAGCGAGGCACCTACTACTTCCTCTATCGCTCCCTC CTCAATTTTTACGCCGTCATATCCCTGTGGAAGGAGGGAGGGAAGGAGGG AGGGGTGGGCCAGTATCCAATGGGCCTGCCGGAGGTTTGGGGCGAGCAAC GCCTGTACTACCTGGATGACGAGGAGGGAGGGAGCGAGGAAAGGAAGGAG GAAGGTGCAGGGGAGAAGGTGACATCGACCGCGGCAAAAGCTGAGCCAGG CTCGTCGCATTGGCAGGCGCCATTGGTCATGAGCTTCGTGAGGAATGAGA CGAAGGGGGAGGAGGAGGGAGCCACGCTTCTCGTTCTCATTCGCGGCACC GTCTACGCGAATGAGTGGAATCTCGACTTTCAATACGATTACGCAGCGGC GGAAGAATTCGCGCGTTTTTTCCCTTTGGAGGGTGAGGAAGGGAGGGAGG AAGGGCGGGTCCACGGCGGGTTTTTCGATGCTTTCTCTCGGTTGGCGCGT CCCTTAAAGGAGGAGGTAGGGTGGCTGGTAGGGTCAAACAGCAGTGGGAA AAGTCTGCGAAAACGACCCAGGGGAGAGGAGGAGGACGAGAAGGAGGACA AGGAGGGGGGCAGGCGGAAGGGAGGAGCGCTGCAGAGAGTCCTTATCTCT GGGCACTCGCTCGGGGGTTCGGTGGGGGCGATGGTGGCCTTATATATCGC CGAGCATTTCCCTGAGGTGCAGGTGGATCTGGTGACATTCGGAGCGCCTA ATGTAGGGAATGCGGCCGTTGGGAGGAGGTTTGACAAGGCGGTGAACAAC CGACATGTGACCTTTACGGGCGTTGGCGGGGTGGGTAAGGCCTACTACAT CGGGGACTGGATCAGCCAGGTCCCTTGCGGCCACCTGACCGCCTGCCCTC TGCTCGAATCTAAGGTGGGCGGGGGGGCCGACATGAGCGACGACAGTCCG CTGCCGAGGACGGGTAGTTTCAACTACACCGCATTGGGTGGCGCAGTGCC CTTCACAGCGGACGATTTGGGTCCACACGCCGCAGGTTGGCGCACACGAA GCGACCTCTCCAGCTACAGGTACAGCCCCGTGGCCTCGCACGTATGCAGC TATCTGTGTTTCACCGCGCCTGTGGTGGGGGATAAAGAGGACAGATGCCA ATTTACACTTGACTTCTGGGACACCACTGCCGCGCCGGAAAATCGATGTC CACACTGGATGTAGAAGCTGTAAGGTAGCCCCTTTTGACTCCAAGGCCGT CCAGACGATTGATTGGGAGGGAGGGAGGGAGGGAAGTTGTGATTTAATAG AAGACATAGGGGATAGAGATAGAGAGATGTAAATGTGGGTGTTGTACGTA ATAGGGACAAGTCCGACAAACAGTGCAGCATGAAAAGAGATTATGTGCGT GGCTGTGCATGTGCGTGTTTTTCCTTTTCGGGGGGGAAAGAGAAAGAAAT GGGGAAGAGATGAGTCGAGGCGCTGAAGCTGGCAGGCGGGGAGTAACAAT GTACAGGCAGAGAGAGAGATCTGTATGCAAGTGCTTCGAAATTACAAATC GTTAATACACTAGAAGAGATGACAAGGCATTCGCCACGGCTTCGCACATT CTTTCTACCCATGGCAGAAACCTTAACCAAGTGGGGCAAAGACGGATCCT GGCAACGACGAGACGAACTTGGGCAGTGCCTCCGGTTGGTCGTTGGCGAA CAGTAGGGCGATGCATGGATCCCTAGGATCATTGTCTACGTAACAGAATT AAAGAGAAAAGTGCACCAAGAGGTTAAAGA back to topprotein sequence of NO05G00120.3 >NO05G00120.3-protein ID=NO05G00120.3-protein|Name=NO05G00120.3|organism=Nannochloropsis oceanica|type=polypeptide|length=466bp MQRSMDAEGVLCASGASWVAITKSMPPQLGRGSAAKRPVDPQGLFPEPLQ DLRPLPPTIPQNISDHERGTYYFLYRSLLNFYAVISLWKEGGKEGGVGQY PMGLPEVWGEQRLYYLDDEEGGSEERKEEGAGEKVTSTAAKAEPGSSHWQ APLVMSFVRNETKGEEEGATLLVLIRGTVYANEWNLDFQYDYAAAEEFAR FFPLEGEEGREEGRVHGGFFDAFSRLARPLKEEVGWLVGSNSSGKSLRKR PRGEEEDEKEDKEGGRRKGGALQRVLISGHSLGGSVGAMVALYIAEHFPE VQVDLVTFGAPNVGNAAVGRRFDKAVNNRHVTFTGVGGVGKAYYIGDWIS QVPCGHLTACPLLESKVGGGADMSDDSPLPRTGSFNYTALGGAVPFTADD LGPHAAGWRTRSDLSSYRYSPVASHVCSYLCFTAPVVGDKEDRCQFTLDF WDTTAAPENRCPHWM* back to topmRNA from alignment at chr5:51980..55473- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G00120.3 ID=NO05G00120.3|Name=NO05G00120.3|organism=Nannochloropsis oceanica|type=mRNA|length=3494bp|location=Sequence derived from alignment at chr5:51980..55473- (Nannochloropsis oceanica) AGGCTTTGGCACACAATATAACCCAGATGCCACCATCACTGGCTTCGCAC
AAACACAAACGACGGCGAGCACTAGGCGCTTCCCAGAGCAGCAGCATCAT
ATGGGTCTGCCTCCTCGGCGCCGCTGCCGCTTCCCCTGCCCCCGCCACCA
CAATCACGAATATGACAAGAAGAATAAGAAGGCATACTTTCGATGATCCT
TCCATTACCTTCGCGACGGGGCCTACTTCTTCTTCTTCCTGGTCATCATG
GTCTTCTTCGTTGTGGCCCGAACGCTGGAGCTGGCCCACTTCCACCACAA
CCGCTTCCTCCTCTCCTGCGTCTACAGGGAGCGTGACGGCCGTACCCACC
CCTTCTCCGACATACTCTAAACTTGACCAGGATAGGATCGACTATGGGGC
GTATGTGCATGAGCATGGAGTGGTAAGAAACAAGAGATGGGGAAGGGAAG
GCGGGAGGGAGTGATCGAGGGATGGTATAGGTCATTCATGATGTTCACCA
CGCACATAGGACTTATGCTACTTTCTTAAATAGGCACCACAAGGGAACGA
ATATCCATCCTGCCCCATGCAGAGAAGTATGGACGCCGAGGGAGTGTTGT
GTGCCTCAGGCGCTTCCTGGGTCGCGAGTAAGTCCTCGTAACGAGAAGGG
GAGGAGGGAGGGGAGGAATTCAATGCAAGGGATAAAGCTTGACAGGATTA
GGAATGACGAAAGTGTAAGTGTTTGTGGCGAAACTGCAATGACCATATCG
CTCGCTTGATCATAGTCTTCTCGAACACTCGGAGGCATCCAAGTACTCTC
TTTCCTCACTTCCCTCCCTTCCTCCATCCCTCCCTCCCTCCATCCATCCC
TCTCTTCCACTCTCCCTCCCTATCCTCCACCAGTCACGAAATCCATGCCC
CCCCAGCTTGGACGAGGCAGCGCCGCCAAACGCCCTGTCGACCCGCAAGG
TCTCTTCCCGGAGCCGTTGCAGGACCTTCGCCCCCTCCCTCCCACCATCC
CCCAAAATATCTCCGACCACGAGCGAGGCACCTACTACTTCCTCTATCGC
TCCCTCCTCAATTTTTACGCCGTCATATCCCTGTGGAAGGAGGGAGGGAA
GGAGGGAGGGGTGGGCCAGTATCCAATGGGCCTGCCGGAGGTTTGGGGCG
AGCAACGCCTGTACTACCTGGATGACGAGGAGGGAGGGAGCGAGGAAAGG
AAGGAGGAAGGTGCAGGGGAGAAGGTGACATCGACCGCGGCAAAAGCTGA
GCCAGGCTCGTCGCATTGGCAGGCGCCATTGGTCATGAGCTTCGTGAGGA
ATGAGACGAAGGGGGAGGAGGAGGGAGGTAAGACGGAGGAATTGGGAGTG
CAGGATCTTCTCTCGCTTTTTTTCCACCGAGTACTCAGCTTCGGACCTCC
TGTCCCTCCCTCTCTCCCTCCCTCCCCCCCTTTCCAGCCACGCTTCTCGT
TCTCATTCGCGGCACCGTCTACGCGAATGAGTGGAATCTCGACTTTCAAT
ACGATTACGCAGCGGCGGAAGAATTCGCGCGTTTTTTCCCTTTGGAGGGT
GAGGAAGGGAGGGAGGAAGGGCGGGTCCACGGCGGGTTTTTCGATGCTTT
CTCTCGGTTGGCGCGTCCCTTAAAGGAGGAGGTAGGGTGGCTGGTAGGGT
CAAACAGCAGTGGGAAAAGTCTGCGAAAACGACCCAGGGGAGAGGAGGAG
GACGAGAAGGAGGACAAGGAGGGGGGCAGGCGGAAGGGAGGAGCGCTGCA
GAGAGTCCTTATCTCTGGGCACTCGCTCGGGGGTTCGGTGGGGGCGATGG
TGGCCTTATATATCGCCGAGCATTTCCCTGAGGTGCAGGTGGATCTGGTG
ACATTCGGAGCGCCTAATGTAGGGAATGCGGCCGTTGGGAGGAGGTTTGA
CAAGGCGGTGAACAACCGACATGTAAGGAGGGGGGGAGGAAGGGAGGGAG
GAGGAGGGGAGGGAGGAAGAAGAGGAGAATGCTTCCATGTCTGAGTGATT
CTGGCCTCTCATTTCGCGCCTTTTTTCCTCGCAGGTGACCTTTACGGGCG
TTGGCGGGGTGGGTAAGGCCTACTACATCGGGGACTGGATCAGCCAGGTA
GGGAGGGAGGGAGGGAGGGAGGGAGGGAGGATCATACGCACGAAGAGAGC
ACAGGAAGCTTTCCGGAGGAGGGAAAAAAGGAAGCTATTTTCTCCATTCA
ACAGCCATGGGTGAGAAAGGGGTTTATCACCAACCTACTCTCTTCCCTAC
CTCCCTACCTCCCTTCCTCTCTCCCTTCCTTAGGTCCCTTGCGGCCACCT
GACCGCCTGCCCTCTGCTCGAATCTAAGGTGGGCGGGGGGGCCGACATGA
GCGACGACAGTCCGCTGCCGAGGACGGGTAGTTTCAACTACACCGCATGT
AGGGAGGGAGGGAGGGAGGGAGGGACGGAGGAACTGCACGGATATTTCCA
CCTCTGGACTGGGTCGTGGTGTCAGTATGCTGACGCTTCCTTCCCTCCCT
CACTCCCTCTTTTTGTCATACTTGTCAGTGGGTGGCGCAGTGCCCTTCAC
AGCGGACGATTTGGGTCCACACGCCGCAGGTTGGCGCACACGAAGCGACC
TCTCCAGCTACAGGTAACGCAAGGAGAGAGTCGAGGGAGGGAGGGAAGGA
GGGAGGGAGGGGAGGGAGGGAAGGAGAGAGTGGATGTCGCTATTTGATCT
TCGCCGCGCCTAACGCTGAAGAGATATATGCCCCTCATCCTCCCTCCTTC
CCTTCATTCTTCCCTCCCTCCTTATTCCGCCAGGTACAGCCCCGTGGCCT
CGCACGTATGCAGCTATCTGTGTTTCACCGCGCCTGTGGTGGGGGATAAA
GAGGACAGATGCCAATTTACACTTGACTTCTGGGACACCACTGCCGCGCC
GGAAAATCGATGTCCACACTGGATGTAGAAGCTGTAAGGTAGCCCCTTTT
GACTCCAAGGCCGTCCAGACGATTGATTGGGAGGGAGGGAGGGAGGGAAG
TTGTGATTTAATAGAAGACATAGGGGATAGAGATAGAGAGATGTAAATGT
GGGTGTTGTACGTAATAGGGACAAGTCCGACAAACAGTGCAGCATGAAAA
GAGATTATGTGCGTGGCTGTGCATGTGCGTGTTTTTCCTTTTCGGGGGGG
AAAGAGAAAGAAATGGGGAAGAGATGAGTCGAGGCGCTGAAGCTGGCAGG
CGGGGAGTAACAATGTACAGGCAGAGAGAGAGATCTGTATGCAAGTGCTT
CGAAATTACAAATCGTTAATACACTAGAAGAGATGACAAGGCATTCGCCA
CGGCTTCGCACATTCTTTCTACCCATGGCAGAAACCTTAACCAAGTGGGG
CAAAGACGGATCCTGGCAACGACGAGACGAACTTGGGCAGTGCCTCCGGT
TGGTCGTTGGCGAACAGTAGGGCGATGCATGGATCCCTAGGATCATTGTC
TACGTAACAGAATTAAAGAGAAAAGTGCACCAAGAGGTTAAAGA back to topCoding sequence (CDS) from alignment at chr5:51980..55473- >NO05G00120.3 ID=NO05G00120.3|Name=NO05G00120.3|organism=Nannochloropsis oceanica|type=CDS|length=1398bp|location=Sequence derived from alignment at chr5:51980..55473- (Nannochloropsis oceanica) ATGCAGAGAAGTATGGACGCCGAGGGAGTGTTGTGTGCCTCAGGCGCTTC CTGGGTCGCGATCACGAAATCCATGCCCCCCCAGCTTGGACGAGGCAGCG CCGCCAAACGCCCTGTCGACCCGCAAGGTCTCTTCCCGGAGCCGTTGCAG GACCTTCGCCCCCTCCCTCCCACCATCCCCCAAAATATCTCCGACCACGA GCGAGGCACCTACTACTTCCTCTATCGCTCCCTCCTCAATTTTTACGCCG TCATATCCCTGTGGAAGGAGGGAGGGAAGGAGGGAGGGGTGGGCCAGTAT CCAATGGGCCTGCCGGAGGTTTGGGGCGAGCAACGCCTGTACTACCTGGA TGACGAGGAGGGAGGGAGCGAGGAAAGGAAGGAGGAAGGTGCAGGGGAGA AGGTGACATCGACCGCGGCAAAAGCTGAGCCAGGCTCGTCGCATTGGCAG GCGCCATTGGTCATGAGCTTCGTGAGGAATGAGACGAAGGGGGAGGAGGA GGGAGCCACGCTTCTCGTTCTCATTCGCGGCACCGTCTACGCGAATGAGT GGAATCTCGACTTTCAATACGATTACGCAGCGGCGGAAGAATTCGCGCGT TTTTTCCCTTTGGAGGGTGAGGAAGGGAGGGAGGAAGGGCGGGTCCACGG CGGGTTTTTCGATGCTTTCTCTCGGTTGGCGCGTCCCTTAAAGGAGGAGG TAGGGTGGCTGGTAGGGTCAAACAGCAGTGGGAAAAGTCTGCGAAAACGA CCCAGGGGAGAGGAGGAGGACGAGAAGGAGGACAAGGAGGGGGGCAGGCG GAAGGGAGGAGCGCTGCAGAGAGTCCTTATCTCTGGGCACTCGCTCGGGG GTTCGGTGGGGGCGATGGTGGCCTTATATATCGCCGAGCATTTCCCTGAG GTGCAGGTGGATCTGGTGACATTCGGAGCGCCTAATGTAGGGAATGCGGC CGTTGGGAGGAGGTTTGACAAGGCGGTGAACAACCGACATGTGACCTTTA CGGGCGTTGGCGGGGTGGGTAAGGCCTACTACATCGGGGACTGGATCAGC CAGGTCCCTTGCGGCCACCTGACCGCCTGCCCTCTGCTCGAATCTAAGGT GGGCGGGGGGGCCGACATGAGCGACGACAGTCCGCTGCCGAGGACGGGTA GTTTCAACTACACCGCATTGGGTGGCGCAGTGCCCTTCACAGCGGACGAT TTGGGTCCACACGCCGCAGGTTGGCGCACACGAAGCGACCTCTCCAGCTA CAGGTACAGCCCCGTGGCCTCGCACGTATGCAGCTATCTGTGTTTCACCG CGCCTGTGGTGGGGGATAAAGAGGACAGATGCCAATTTACACTTGACTTC TGGGACACCACTGCCGCGCCGGAAAATCGATGTCCACACTGGATGTAG back to top
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