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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr5 | genome | chr5:51980..55473 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G00120.2 vs.
Match: EWM27098.1 (lipase family protein [Nannochloropsis gaditana]) HSP 1 Score: 319.7 bits (818), Expect = 2.000e-83 Identity = 201/552 (36.41%), Postives = 280/552 (50.72%), Query Frame = 0
Query: 58 PSITFATGPTSSSSWSSWSSSLWPERWSWPTSTTTASSSPASTGSVTAVPTPSPTYSKLDQDRIDYGAYVHEHGVAP-QGNEYPSCPMQRSMDAEGVLCASGASWVAITKSMPPQLGRGSAAKRPVDPQGLFPEPLQDLR-PLPPTIPQNISDHERGTYYFLYRSLLNFYAVISLWKEGGKEGGVGQYPM---GLPEVWGEQRLYYLDDEEGGSEERKEEGAGEKVTSTAAKAEPGSSHWQAPLVMSFVRNETKGEEEGATLLVLIRGTVYANEWNLDFQYDYAAAEEFARFFPLEGEEGREEGRVHGGFFDAFSRLARPLKEEVGWLVGSNSSGKSLRKRPRGEEEDEKEDKEGGRRKGGALQRVLISGHSLGGSVGAMVALYIAEHFPEVQVDLVTFGAPNVGNAAVGRRFDKAVNNRHVTFTGVGGVGKAYYIGDWISQVPCGHLTACPLLESKVGGGADMSDDSPLPRTGSFNYTALGGAVPFTADDLGPHAAGWRTRSDLSSYRYSPVASHVCSYLCFTAPVVGDKEDRCQFTLDFWDTTAAPENRC 605
PS +T + + S +S W+WP+ P TG TA PT I+Y Y +HG + +E+P+C +Q +++ +G++C +G+ W+A+T+++PPQLG GS + PVDP P+PL+ L PLP +P + E+ TYYFLYR++ N YA + + Q PM LP W QR Y L G V A +P QAP +SF R++ +LV++RGT+Y+ EW +FQY +A E A + R G VH GFF F LA L ++ K A +V +GHSLGGSVGA++A Y P QV+LV+FGAPNVG+A F+ V NRH+ F+GVG G +Y+IGDWISQVPCG +T CPLL + S S++YTALGG+VPFT + + W RSD++ +RYSPVA+H CSY+CFTAP VGD D+C FTL+ ++ + RC
Sbjct: 39 PSTGTSTSNIRGAPFQSSQTSPQDVGWTWPSW-----GDPWGTGGSTAQPTS-----------INYSNYTRQHGTSTTSASEFPACSIQAALNEDGLICLAGSLWLALTQTLPPQLGWGSKIRPPVDPLRELPQPLEVLSMPLPALVPTEKVEAEKPTYYFLYRAIQNLYAAVGA-NARSRGTDSAQEPMLNLALPPAWTNQREYTL------------RWTGSLV---AGVLQP-----QAPFAVSFTRDKE--------MLVVVRGTIYSAEWQRNFQYQHADPTETAAY--------RMPGGVHAGFFAVFKDLAEALVDD--------------------------------EIKRQAPSKVTFTGHSLGGSVGALLAFYTTHVLPRTQVELVSFGAPNVGDATFSSAFNARVRNRHLAFSGVGSEGDSYFIGDWISQVPCGAVTTCPLLTEMSSVDLNGSPSGQRQANESYSYTALGGSVPFTPAQM-QNGRTWALRSDVAGFRYSPVAAHTCSYMCFTAPSVGDAYDQCVFTLEL-GSSVDMDKRC 503
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G00120.2 ID=NO05G00120.2|Name=NO05G00120.2|organism=Nannochloropsis oceanica|type=mRNA|length=2419bp
AGGCTTTGGCACACAATATAACCCAGATGCCACCATCACTGGCTTCGCAC
AAACACAAACGACGGCGAGCACTAGGCGCTTCCCAGAGCAGCAGCATCAT
ATGGGTCTGCCTCCTCGGCGCCGCTGCCGCTTCCCCTGCCCCCGCCACCA
CAATCACGAATATGACAAGAAGAATAAGAAGGCATACTTTCGATGATCCT
TCCATTACCTTCGCGACGGGGCCTACTTCTTCTTCTTCCTGGTCATCATG
GTCTTCTTCGTTGTGGCCCGAACGCTGGAGCTGGCCCACTTCCACCACAA
CCGCTTCCTCCTCTCCTGCGTCTACAGGGAGCGTGACGGCCGTACCCACC
CCTTCTCCGACATACTCTAAACTTGACCAGGATAGGATCGACTATGGGGC
GTATGTGCATGAGCATGGAGTGGCACCACAAGGGAACGAATATCCATCCT
GCCCCATGCAGAGAAGTATGGACGCCGAGGGAGTGTTGTGTGCCTCAGGC
GCTTCCTGGGTCGCGATCACGAAATCCATGCCCCCCCAGCTTGGACGAGG
CAGCGCCGCCAAACGCCCTGTCGACCCGCAAGGTCTCTTCCCGGAGCCGT
TGCAGGACCTTCGCCCCCTCCCTCCCACCATCCCCCAAAATATCTCCGAC
CACGAGCGAGGCACCTACTACTTCCTCTATCGCTCCCTCCTCAATTTTTA
CGCCGTCATATCCCTGTGGAAGGAGGGAGGGAAGGAGGGAGGGGTGGGCC
AGTATCCAATGGGCCTGCCGGAGGTTTGGGGCGAGCAACGCCTGTACTAC
CTGGATGACGAGGAGGGAGGGAGCGAGGAAAGGAAGGAGGAAGGTGCAGG
GGAGAAGGTGACATCGACCGCGGCAAAAGCTGAGCCAGGCTCGTCGCATT
GGCAGGCGCCATTGGTCATGAGCTTCGTGAGGAATGAGACGAAGGGGGAG
GAGGAGGGAGCCACGCTTCTCGTTCTCATTCGCGGCACCGTCTACGCGAA
TGAGTGGAATCTCGACTTTCAATACGATTACGCAGCGGCGGAAGAATTCG
CGCGTTTTTTCCCTTTGGAGGGTGAGGAAGGGAGGGAGGAAGGGCGGGTC
CACGGCGGGTTTTTCGATGCTTTCTCTCGGTTGGCGCGTCCCTTAAAGGA
GGAGGTAGGGTGGCTGGTAGGGTCAAACAGCAGTGGGAAAAGTCTGCGAA
AACGACCCAGGGGAGAGGAGGAGGACGAGAAGGAGGACAAGGAGGGGGGC
AGGCGGAAGGGAGGAGCGCTGCAGAGAGTCCTTATCTCTGGGCACTCGCT
CGGGGGTTCGGTGGGGGCGATGGTGGCCTTATATATCGCCGAGCATTTCC
CTGAGGTGCAGGTGGATCTGGTGACATTCGGAGCGCCTAATGTAGGGAAT
GCGGCCGTTGGGAGGAGGTTTGACAAGGCGGTGAACAACCGACATGTGAC
CTTTACGGGCGTTGGCGGGGTGGGTAAGGCCTACTACATCGGGGACTGGA
TCAGCCAGGTCCCTTGCGGCCACCTGACCGCCTGCCCTCTGCTCGAATCT
AAGGTGGGCGGGGGGGCCGACATGAGCGACGACAGTCCGCTGCCGAGGAC
GGGTAGTTTCAACTACACCGCATTGGGTGGCGCAGTGCCCTTCACAGCGG
ACGATTTGGGTCCACACGCCGCAGGTTGGCGCACACGAAGCGACCTCTCC
AGCTACAGGTACAGCCCCGTGGCCTCGCACGTATGCAGCTATCTGTGTTT
CACCGCGCCTGTGGTGGGGGATAAAGAGGACAGATGCCAATTTACACTTG
ACTTCTGGGACACCACTGCCGCGCCGGAAAATCGATGTCCACACTGGATG
TAGAAGCTGTAAGGTAGCCCCTTTTGACTCCAAGGCCGTCCAGACGATTG
ATTGGGAGGGAGGGAGGGAGGGAAGTTGTGATTTAATAGAAGACATAGGG
GATAGAGATAGAGAGATGTAAATGTGGGTGTTGTACGTAATAGGGACAAG
TCCGACAAACAGTGCAGCATGAAAAGAGATTATGTGCGTGGCTGTGCATG
TGCGTGTTTTTCCTTTTCGGGGGGGAAAGAGAAAGAAATGGGGAAGAGAT
GAGTCGAGGCGCTGAAGCTGGCAGGCGGGGAGTAACAATGTACAGGCAGA
GAGAGAGATCTGTATGCAAGTGCTTCGAAATTACAAATCGTTAATACACT
AGAAGAGATGACAAGGCATTCGCCACGGCTTCGCACATTCTTTCTACCCA
TGGCAGAAACCTTAACCAAGTGGGGCAAAGACGGATCCTGGCAACGACGA
GACGAACTTGGGCAGTGCCTCCGGTTGGTCGTTGGCGAACAGTAGGGCGA
TGCATGGATCCCTAGGATCATTGTCTACGTAACAGAATTAAAGAGAAAAG
TGCACCAAGAGGTTAAAGA back to topprotein sequence of NO05G00120.2 >NO05G00120.2-protein ID=NO05G00120.2-protein|Name=NO05G00120.2|organism=Nannochloropsis oceanica|type=polypeptide|length=609bp
MPPSLASHKHKRRRALGASQSSSIIWVCLLGAAAASPAPATTITNMTRRI
RRHTFDDPSITFATGPTSSSSWSSWSSSLWPERWSWPTSTTTASSSPAST
GSVTAVPTPSPTYSKLDQDRIDYGAYVHEHGVAPQGNEYPSCPMQRSMDA
EGVLCASGASWVAITKSMPPQLGRGSAAKRPVDPQGLFPEPLQDLRPLPP
TIPQNISDHERGTYYFLYRSLLNFYAVISLWKEGGKEGGVGQYPMGLPEV
WGEQRLYYLDDEEGGSEERKEEGAGEKVTSTAAKAEPGSSHWQAPLVMSF
VRNETKGEEEGATLLVLIRGTVYANEWNLDFQYDYAAAEEFARFFPLEGE
EGREEGRVHGGFFDAFSRLARPLKEEVGWLVGSNSSGKSLRKRPRGEEED
EKEDKEGGRRKGGALQRVLISGHSLGGSVGAMVALYIAEHFPEVQVDLVT
FGAPNVGNAAVGRRFDKAVNNRHVTFTGVGGVGKAYYIGDWISQVPCGHL
TACPLLESKVGGGADMSDDSPLPRTGSFNYTALGGAVPFTADDLGPHAAG
WRTRSDLSSYRYSPVASHVCSYLCFTAPVVGDKEDRCQFTLDFWDTTAAP
ENRCPHWM* back to topmRNA from alignment at chr5:51980..55473- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G00120.2 ID=NO05G00120.2|Name=NO05G00120.2|organism=Nannochloropsis oceanica|type=mRNA|length=3494bp|location=Sequence derived from alignment at chr5:51980..55473- (Nannochloropsis oceanica)
AGGCTTTGGCACACAATATAACCCAGATGCCACCATCACTGGCTTCGCAC
AAACACAAACGACGGCGAGCACTAGGCGCTTCCCAGAGCAGCAGCATCAT
ATGGGTCTGCCTCCTCGGCGCCGCTGCCGCTTCCCCTGCCCCCGCCACCA
CAATCACGAATATGACAAGAAGAATAAGAAGGCATACTTTCGATGATCCT
TCCATTACCTTCGCGACGGGGCCTACTTCTTCTTCTTCCTGGTCATCATG
GTCTTCTTCGTTGTGGCCCGAACGCTGGAGCTGGCCCACTTCCACCACAA
CCGCTTCCTCCTCTCCTGCGTCTACAGGGAGCGTGACGGCCGTACCCACC
CCTTCTCCGACATACTCTAAACTTGACCAGGATAGGATCGACTATGGGGC
GTATGTGCATGAGCATGGAGTGGTAAGAAACAAGAGATGGGGAAGGGAAG
GCGGGAGGGAGTGATCGAGGGATGGTATAGGTCATTCATGATGTTCACCA
CGCACATAGGACTTATGCTACTTTCTTAAATAGGCACCACAAGGGAACGA
ATATCCATCCTGCCCCATGCAGAGAAGTATGGACGCCGAGGGAGTGTTGT
GTGCCTCAGGCGCTTCCTGGGTCGCGAGTAAGTCCTCGTAACGAGAAGGG
GAGGAGGGAGGGGAGGAATTCAATGCAAGGGATAAAGCTTGACAGGATTA
GGAATGACGAAAGTGTAAGTGTTTGTGGCGAAACTGCAATGACCATATCG
CTCGCTTGATCATAGTCTTCTCGAACACTCGGAGGCATCCAAGTACTCTC
TTTCCTCACTTCCCTCCCTTCCTCCATCCCTCCCTCCCTCCATCCATCCC
TCTCTTCCACTCTCCCTCCCTATCCTCCACCAGTCACGAAATCCATGCCC
CCCCAGCTTGGACGAGGCAGCGCCGCCAAACGCCCTGTCGACCCGCAAGG
TCTCTTCCCGGAGCCGTTGCAGGACCTTCGCCCCCTCCCTCCCACCATCC
CCCAAAATATCTCCGACCACGAGCGAGGCACCTACTACTTCCTCTATCGC
TCCCTCCTCAATTTTTACGCCGTCATATCCCTGTGGAAGGAGGGAGGGAA
GGAGGGAGGGGTGGGCCAGTATCCAATGGGCCTGCCGGAGGTTTGGGGCG
AGCAACGCCTGTACTACCTGGATGACGAGGAGGGAGGGAGCGAGGAAAGG
AAGGAGGAAGGTGCAGGGGAGAAGGTGACATCGACCGCGGCAAAAGCTGA
GCCAGGCTCGTCGCATTGGCAGGCGCCATTGGTCATGAGCTTCGTGAGGA
ATGAGACGAAGGGGGAGGAGGAGGGAGGTAAGACGGAGGAATTGGGAGTG
CAGGATCTTCTCTCGCTTTTTTTCCACCGAGTACTCAGCTTCGGACCTCC
TGTCCCTCCCTCTCTCCCTCCCTCCCCCCCTTTCCAGCCACGCTTCTCGT
TCTCATTCGCGGCACCGTCTACGCGAATGAGTGGAATCTCGACTTTCAAT
ACGATTACGCAGCGGCGGAAGAATTCGCGCGTTTTTTCCCTTTGGAGGGT
GAGGAAGGGAGGGAGGAAGGGCGGGTCCACGGCGGGTTTTTCGATGCTTT
CTCTCGGTTGGCGCGTCCCTTAAAGGAGGAGGTAGGGTGGCTGGTAGGGT
CAAACAGCAGTGGGAAAAGTCTGCGAAAACGACCCAGGGGAGAGGAGGAG
GACGAGAAGGAGGACAAGGAGGGGGGCAGGCGGAAGGGAGGAGCGCTGCA
GAGAGTCCTTATCTCTGGGCACTCGCTCGGGGGTTCGGTGGGGGCGATGG
TGGCCTTATATATCGCCGAGCATTTCCCTGAGGTGCAGGTGGATCTGGTG
ACATTCGGAGCGCCTAATGTAGGGAATGCGGCCGTTGGGAGGAGGTTTGA
CAAGGCGGTGAACAACCGACATGTAAGGAGGGGGGGAGGAAGGGAGGGAG
GAGGAGGGGAGGGAGGAAGAAGAGGAGAATGCTTCCATGTCTGAGTGATT
CTGGCCTCTCATTTCGCGCCTTTTTTCCTCGCAGGTGACCTTTACGGGCG
TTGGCGGGGTGGGTAAGGCCTACTACATCGGGGACTGGATCAGCCAGGTA
GGGAGGGAGGGAGGGAGGGAGGGAGGGAGGATCATACGCACGAAGAGAGC
ACAGGAAGCTTTCCGGAGGAGGGAAAAAAGGAAGCTATTTTCTCCATTCA
ACAGCCATGGGTGAGAAAGGGGTTTATCACCAACCTACTCTCTTCCCTAC
CTCCCTACCTCCCTTCCTCTCTCCCTTCCTTAGGTCCCTTGCGGCCACCT
GACCGCCTGCCCTCTGCTCGAATCTAAGGTGGGCGGGGGGGCCGACATGA
GCGACGACAGTCCGCTGCCGAGGACGGGTAGTTTCAACTACACCGCATGT
AGGGAGGGAGGGAGGGAGGGAGGGACGGAGGAACTGCACGGATATTTCCA
CCTCTGGACTGGGTCGTGGTGTCAGTATGCTGACGCTTCCTTCCCTCCCT
CACTCCCTCTTTTTGTCATACTTGTCAGTGGGTGGCGCAGTGCCCTTCAC
AGCGGACGATTTGGGTCCACACGCCGCAGGTTGGCGCACACGAAGCGACC
TCTCCAGCTACAGGTAACGCAAGGAGAGAGTCGAGGGAGGGAGGGAAGGA
GGGAGGGAGGGGAGGGAGGGAAGGAGAGAGTGGATGTCGCTATTTGATCT
TCGCCGCGCCTAACGCTGAAGAGATATATGCCCCTCATCCTCCCTCCTTC
CCTTCATTCTTCCCTCCCTCCTTATTCCGCCAGGTACAGCCCCGTGGCCT
CGCACGTATGCAGCTATCTGTGTTTCACCGCGCCTGTGGTGGGGGATAAA
GAGGACAGATGCCAATTTACACTTGACTTCTGGGACACCACTGCCGCGCC
GGAAAATCGATGTCCACACTGGATGTAGAAGCTGTAAGGTAGCCCCTTTT
GACTCCAAGGCCGTCCAGACGATTGATTGGGAGGGAGGGAGGGAGGGAAG
TTGTGATTTAATAGAAGACATAGGGGATAGAGATAGAGAGATGTAAATGT
GGGTGTTGTACGTAATAGGGACAAGTCCGACAAACAGTGCAGCATGAAAA
GAGATTATGTGCGTGGCTGTGCATGTGCGTGTTTTTCCTTTTCGGGGGGG
AAAGAGAAAGAAATGGGGAAGAGATGAGTCGAGGCGCTGAAGCTGGCAGG
CGGGGAGTAACAATGTACAGGCAGAGAGAGAGATCTGTATGCAAGTGCTT
CGAAATTACAAATCGTTAATACACTAGAAGAGATGACAAGGCATTCGCCA
CGGCTTCGCACATTCTTTCTACCCATGGCAGAAACCTTAACCAAGTGGGG
CAAAGACGGATCCTGGCAACGACGAGACGAACTTGGGCAGTGCCTCCGGT
TGGTCGTTGGCGAACAGTAGGGCGATGCATGGATCCCTAGGATCATTGTC
TACGTAACAGAATTAAAGAGAAAAGTGCACCAAGAGGTTAAAGA back to topCoding sequence (CDS) from alignment at chr5:51980..55473- >NO05G00120.2 ID=NO05G00120.2|Name=NO05G00120.2|organism=Nannochloropsis oceanica|type=CDS|length=1827bp|location=Sequence derived from alignment at chr5:51980..55473- (Nannochloropsis oceanica)
ATGCCACCATCACTGGCTTCGCACAAACACAAACGACGGCGAGCACTAGG
CGCTTCCCAGAGCAGCAGCATCATATGGGTCTGCCTCCTCGGCGCCGCTG
CCGCTTCCCCTGCCCCCGCCACCACAATCACGAATATGACAAGAAGAATA
AGAAGGCATACTTTCGATGATCCTTCCATTACCTTCGCGACGGGGCCTAC
TTCTTCTTCTTCCTGGTCATCATGGTCTTCTTCGTTGTGGCCCGAACGCT
GGAGCTGGCCCACTTCCACCACAACCGCTTCCTCCTCTCCTGCGTCTACA
GGGAGCGTGACGGCCGTACCCACCCCTTCTCCGACATACTCTAAACTTGA
CCAGGATAGGATCGACTATGGGGCGTATGTGCATGAGCATGGAGTGGCAC
CACAAGGGAACGAATATCCATCCTGCCCCATGCAGAGAAGTATGGACGCC
GAGGGAGTGTTGTGTGCCTCAGGCGCTTCCTGGGTCGCGATCACGAAATC
CATGCCCCCCCAGCTTGGACGAGGCAGCGCCGCCAAACGCCCTGTCGACC
CGCAAGGTCTCTTCCCGGAGCCGTTGCAGGACCTTCGCCCCCTCCCTCCC
ACCATCCCCCAAAATATCTCCGACCACGAGCGAGGCACCTACTACTTCCT
CTATCGCTCCCTCCTCAATTTTTACGCCGTCATATCCCTGTGGAAGGAGG
GAGGGAAGGAGGGAGGGGTGGGCCAGTATCCAATGGGCCTGCCGGAGGTT
TGGGGCGAGCAACGCCTGTACTACCTGGATGACGAGGAGGGAGGGAGCGA
GGAAAGGAAGGAGGAAGGTGCAGGGGAGAAGGTGACATCGACCGCGGCAA
AAGCTGAGCCAGGCTCGTCGCATTGGCAGGCGCCATTGGTCATGAGCTTC
GTGAGGAATGAGACGAAGGGGGAGGAGGAGGGAGCCACGCTTCTCGTTCT
CATTCGCGGCACCGTCTACGCGAATGAGTGGAATCTCGACTTTCAATACG
ATTACGCAGCGGCGGAAGAATTCGCGCGTTTTTTCCCTTTGGAGGGTGAG
GAAGGGAGGGAGGAAGGGCGGGTCCACGGCGGGTTTTTCGATGCTTTCTC
TCGGTTGGCGCGTCCCTTAAAGGAGGAGGTAGGGTGGCTGGTAGGGTCAA
ACAGCAGTGGGAAAAGTCTGCGAAAACGACCCAGGGGAGAGGAGGAGGAC
GAGAAGGAGGACAAGGAGGGGGGCAGGCGGAAGGGAGGAGCGCTGCAGAG
AGTCCTTATCTCTGGGCACTCGCTCGGGGGTTCGGTGGGGGCGATGGTGG
CCTTATATATCGCCGAGCATTTCCCTGAGGTGCAGGTGGATCTGGTGACA
TTCGGAGCGCCTAATGTAGGGAATGCGGCCGTTGGGAGGAGGTTTGACAA
GGCGGTGAACAACCGACATGTGACCTTTACGGGCGTTGGCGGGGTGGGTA
AGGCCTACTACATCGGGGACTGGATCAGCCAGGTCCCTTGCGGCCACCTG
ACCGCCTGCCCTCTGCTCGAATCTAAGGTGGGCGGGGGGGCCGACATGAG
CGACGACAGTCCGCTGCCGAGGACGGGTAGTTTCAACTACACCGCATTGG
GTGGCGCAGTGCCCTTCACAGCGGACGATTTGGGTCCACACGCCGCAGGT
TGGCGCACACGAAGCGACCTCTCCAGCTACAGGTACAGCCCCGTGGCCTC
GCACGTATGCAGCTATCTGTGTTTCACCGCGCCTGTGGTGGGGGATAAAG
AGGACAGATGCCAATTTACACTTGACTTCTGGGACACCACTGCCGCGCCG
GAAAATCGATGTCCACACTGGATGTAG back to top
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