Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr4 genome chr4:1486112..1494554 +
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G05270.2 vs.
Match: OAJ16359.1 (hypothetical protein A4X06_g6519 [Tilletia controversa])
HSP 1 Score: 149.8 bits (377), Expect = 5.900e-32
Identity = 173/661 (26.17%), Postives = 270/661 (40.85%), Query Frame = 0
Query: 638 RARERGKEEAKEEDEDFLGHILEHATLPSKVAAFLRTFLRHVLPPSLLGSRHNTQIFIQAAVRTCVEEAHSRTLISPSAFLSGGGLRVKEVGWAAAASSPPSSSVPSPSDLALRQDLVLSLLRFLLADLVLPLLKGCFYVTEADGTGLALHFFRKPVWQRVQSTPLEVLFPGQY------EALDLFPPSAGAGRGEVGKEGGGERAAVPWRLGVSAIRLMPKKKGGLRIIADHAKAPVAVQDLLRSKEGGREGGGEGGLQRGGKRYSLLPVNRALANVHQVLKYEMSRRPSLT----GVGVLGLDAIHCPLLRFVEQLRGRTGGREGRKEGGCGCACHRLRREEEGEDDGEGGRTGSGRP-LYFVSVDVQRCYDHIQVHRLMDILRDTLSAEAYHIRRFAVSHPFRSRHSIHINHLKEAYPEGGWEAFPDIAAKLSRHYKAAVMTDGVIESRLSRAEALTLLEEHLMCSFVHLPQQQQQPQHLQQRRRKGGGGMEGGREKGAGGKQCGRRVLRQIRGISQGSILSPALCNLYLGQAEGEKARGREGGRGLASLVQEEEREEEGACEACLCSGHRKEGGREGRASSPSLVVRMIDDYLFVSTSRQKAVAFLERVYSALPPVGMRVHPDKTKTNF-------ACTVRVRERKDEREVGGQAED 1281
RAR +++AKE+ + ++A +V+ F L+ ++P LLGSRHN + +Q A + + + G+R+ EV W + P+ + LR DL L+ ++ L++PLL+ FY+TE+ +FR+ W + L+ L + EAL + +GR LG S IRL+PK+ G+R I + + V + + G G + ++Y+L NR++ N+ Q + ++ S G V G++ I L F Q+ R GS RP LYFV VDVQ +D I+ +L+ I+R L+ + Y I+RF P + I N++K A E F ++A L+ + + DGV+ + R LTLLE+H +EG K GR +Q GI QGS LS LC+++ E L + + E+ A E+ +KEG + S SL++R DD+LF+STSR+KA AF + + P G + P KT NF RVRER +R G A +
Sbjct: 546 RARIAAEKQAKEKPRFY-----KYAVSTGQVSHFAYVVLKSIIPHGLLGSRHNLNVLLQKASQFIKGRRYESLTLHEVM----QGIRISEVDWLLPVNGRAQQQRPTAVESQLRNDLFAELVYWIFDSLLIPLLRTTFYITESAAFRNRTLYFRQDDWATASAPLLDTLKTSLFTPITHREALQIM-----SGRN----------------LGYSHIRLLPKE-AGVRPIVNLRRRSV------KQTQTGDSKAPTPGKNQAYEKYAL---NRSINNILQSTFHILTYERSSQPDLMGASVFGMNDIFRRLKDFQRQVFA--------------------------------SRKGSARPHLYFVKVDVQAAFDTIEQGKLLAIVRKLLTGDDYLIQRFTEVMPTGGK--IKKNYMKRACLETEHGTFLELAQDLANSLRHVIFVDGVVYAHEERRRVLTLLEQH----------------------------IEGNLVK------IGREFFKQKIGIPQGSSLSTLLCSVFYADME-------RSDPDLLPIGTVTRQTEQSAPES------QKEGSASSK-SIVSLLMRYTDDFLFISTSRRKAKAFFKTMLKGHPEYGCFISPGKTLANFDLFFPDGGFVPRVRERTVKRRRPGAASN 1084
The following BLAST results are available for this feature:
BLAST of NO04G05270.2 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
500 1000 1500 2000 2500 3000 3500 4000 4500 5000 5500 Expect = 5.90e-32 / Id = 26.17 Sequence OAJ16359.1
Match Name E-value Identity Description
OAJ16359.1 5.900e-32 26.17 hypothetical protein A4X06_g6519 [Tilletia controv... [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO04G05270.2 ID=NO04G05270.2|Name=NO04G05270.2|organism=Nannochloropsis oceanica|type=mRNA|length=5795bp back to top protein sequence of NO04G05270.2
>NO04G05270.2-protein ID=NO04G05270.2-protein|Name=NO04G05270.2|organism=Nannochloropsis oceanica|type=polypeptide|length=1328bp back to top mRNA from alignment at chr4:1486112..1494554+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G05270.2 ID=NO04G05270.2|Name=NO04G05270.2|organism=Nannochloropsis oceanica|type=mRNA|length=8443bp|location=Sequence derived from alignment at chr4:1486112..1494554+ (Nannochloropsis oceanica)ATGTCACCC
GACCGTAGTCGCAGCCGACGTCCCCTAGCCATGAATGAGGTCAAAAGCGG
TAGAAATCCAAACAAAGGAAAGATGGATAGCAAAGGGCACTTCATCTGGA
CCCTTTTTCCTGAAACCAAGCGTCTGCAAGAACACCTCCTCTC GTAAGTC
TTGCTCCCTCCATCTTCTTCCCCTCCCACTGTGCTCACTACCCACCGCCC
ATTTCTCATCACGGCCCCAAATCTTGATCGCCTCTAGGTGGGTGTCTTCA
CCTCAAGCCCTCCGCCGCCCCGGGGATACCACCACTTTCCTTGCCTTCCT
TCGCAACACCCTCGTCGTGCCCCTCGACCCGACTCTTCTCCCTGCCTCCA
CTCGACCACGTCTCCTTGTTCAGTCGCCGACAGCCGCGAGAGGCACTGAG
ACAACAGTCGGACCAACCTTACTACATGAGAGCTACACCATGGATGACGT
CTTGGAAAG GTGGGTGCGTGTCCTTCCTTGTCTCTGCTCCAACCCTTTCT
TCCCTCCATCCCGCCCCCTGTCTACCTCGGACCCACGGACTATGTCTTCC
GTCACTCCAATCCCTCTCTATCACGTCAGGCTCACCACTCCAGCAGCTAC
GAGCCGCTCCGCTGCCGGAGCGGGTCCCTCGGTCCTGACCCTTGGCTATC
GCCCCATCTCTTCCGAAAGGGACGAAGGTCTGCTCAACCATCCAG GTACT
TGCTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCTGTCCTGTCCTTCCTTCCATTATCCCAGTCTTCCA
AATTTCGATTTGGGTTAGAAGAAAAGGACGACATCCGGACTGAAGGGAAA
GGGCCTTAAAATTGTGCTCAGCTCCCTGGCTCCTACACGTCCACCGTAAT
AGAATAATCCTCACCCACCAATTTCTTCTTCCCTCCCTCCCTTTCTCCCT
CCCTCCTTCCCTCGCAGGCATCCAGTGTGATCACGTGAACAGCACCCGCG
ATGTCCTCACCCACCAGCCCGAGTGGTCTCTCCTCCTGGCCCGGGTGGGG
GGGCTGTGCCTTACAGACCTGCTGTTGCGACACATGGTGCTGCTTCCCTT
GCCCGCCAACGGCAGCTTCCTGCAG GTAGGCAGGAAGAAAGGGAGGGATG
AGGAAGGGAGGGAGGGAGGGAGGGTGCGACTCATCGACCATCAGCGGGGT
ACAATCTTTTATCCTAGCCCGCCGACCGCATCCAGTAGATAGATGGCTGG
AAAGGGTGGCAGATATGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGACGG
GGGGAAAGGGGCCTTGTTCTCCTCGTGCTCCCCTGGATATCATCCTTCTG
TCGTCTCAATCTTATGCATTTGCTTCGCTCCCGAATCGCTCCCTCTCCCC
CTCCTTCTCTCCAGCTGTCGGGACCGCCCCTTCCGTCCTTGTTGAGCCGC
AAAGAGGTCGTAGCCCGCTACCAGGCAGCCACACGCCTCAAGAGGAGGAG
GGCCGGAAGGAAGGAGGGAAAGGGGGAAAGGAAAGAGGGAGGGGAGGGGG
AGGAGGAGATTGAGGAGGAGGACAAGGAGGCAAAGGAGGAAGATAATCAA
AAAAATGAGGGGAAGGAGGAGGAGAACGCAGTGGAGGAGGAGAAGGGGGT
GAAGCAGAGGGAGGAGAGAAAAGGCGTGATTTTTGCTGCCGAGGCATCTG
AAGAAAAAGTAGACCGAAAATCAGATGGTGAGAAAGGGAGGGAGGAGGGA
AACGAAGATGAGGGGAGCAGGAAAAAGAGGAAATGCACGACAGAGGACGA
AGAAGAAAGATTAAACTCCAGCCGGTCACGGAGAGAGGGAGACGAATGGG
AGGAGGCAGAGGTGGCGATGGAGGAGGGAGGGGAGGAGGAGGAGGAAGAG
GAGGAGGAGGAAAAGAAGAACGTTCTCAAGAAGATCAATGAGAAGGAAAG
AGGAAGGAAGGAAGGGAAGGAGGATAAGGATCGACAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGGAGGAGGAAGAGGAGGTAGTGATCTCGCTGGGT
CGGATCTTGTATAGTTGTGAGTTCAAAGGACGCGGCGTGGGGCTGCATCC
ACATTCTCTCTTGAGCCGGGTGCTATCTTCAGGGAGGAAAGAAAGGGCGA
AGGAAAGAGGAGAAGAAGGAGGACGAGGAGGAAGAAGTGACACGAGCTTG
CTCTCTCGGCAGGCTGGGAGGTTGGTGGAATCGATCTTCTGCCCCTTGCC
CCCTCCTCCCCCGCCCTCCTTCCTCCTTCCTTACCCTCCTCCTTCCGCAC
CACCGACCCAGGCGAAGCAGAAGATAAAGCGTGGCCCTCACCCAAACCGC
GCTCCCTCCCGCCTTCCCTCCCTCCCTCCCGCTACCCGTCGTCGGATCCG
TCAGGTCGTTCCCCTTCTCGTGGACCTATTGGAGCGGTATCAAG GTGAGG
GAGGGACGGAGGGCGGTTGGGAGGAAGGGAGGGAGAAGAAATCAAGAGGT
GCTCACACCGACGATTTTCTTTCACGTGCTCAAGCTCCCCTTTCTCCCTT
ACTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTCTCCGCACAGGTT
TGAATGTCGGGAGGATGCTGGGTCGGTTTTGTCCGTACGAGAAGACCAAG
ATAAGGAAGAGAGGGAGGGAGGGGGGGAGGGAGGGGGGCGATAAGGAGGA
GGAGGAGGGGGCAGGGTATAGGTCTCAGGCGGAGGCAGCGGGGGGATGGG
GGGATGAGGAAGAGGACGAGGAGGCAGAGGAGAAGAGCAGAAGACAGGTA
AAAAATAGGAGAGAGGGGGGCGGGAGAAAAAGGGCAAGGGAGCGAGGAAA
AGAGGAGGCGAAGGAGGAGGATGAGGACTTTCTAGGTCACATTTTGGAGC
ACGCCACGCTTCCGTCAAAG GTAGGGGAAAGCGCGGACAGAGGGGGTAGG
CAGAGAGAGGAGGGGGGAAGGGGGGAGGGAGGAAAGGGAGAAGAATTCAG
GTAAGCTGCAGCGCTACTCCAACGCACCTCATTGGCCCTTCCACCTTCCC
TCCCTGCTCTCTTTCCCCCCCTCAGGTCGCTGCCTTCCTCCGCACCTTCC
TCCGCCACGTCCTCCCTCCCTCCCTCCTCGGTTCGCGCCATAACACCCAG
ATCTTCATCCAGGCCGCTGTACGCACTTGCGTGGAGGAGGCGCACTCCCG
GACGCTCATTTCGCCCTCCGCTTTCCTCTCGGGGGGGGGCTTGAGAGTCA
AGGAGGTGGGCTGGGCGGCAGCAGCCTCCTCCCCTCCCTCCTCCTCTGTC
CCTTCCCCTTCGGACCTCGCCCTCCGCCAGGACCTCGTCCTCTCCCTGCT
CCGCTTCCTCCTTGCCGACCTGGTGCTCCCCTTACTCAAAG GTACGGGCT
GGCGAGGGAGGGAGGGAGGAGGGAAGGGAGGGAGGGACACAGGGAAAAGA
AGAGTAAAGGACTCGACACGGGAGGGAGTAGGGTTAAGGATTCTTGCGAA
CAGGAGAACAAGCTCACCTTCCACTCGGCCTCCCTCCCTCCCTTTCTCTC
TCTTTCCCTCCCTCTCTCCTCCCCCTGTGTGTCCATTCCCAGGCTGCTTT
TATGTGACCGAAGCGGACGGCACGGGGCTGGCCTTGCACTTCTTCCGGAA
GCCCGTCTGGCAACGGGTGCAG GTAGGGAGGGAGGGAGGGAGGGAGGGAG
GGAGAGAGAGAGGGCGGGGATGGCCATGGAAAGCGAAGGATTCCTAGCCT
TGAGGCAGCTCTCAGTCGCATCATCTCGCCACATGTATCTTCCCTCCCTC
CCGCCCTCCCTCCCTTCTTTCCCCCCACCCTGCAGAGCACGCCCCTGGAG
GTTCTTTTCCCCGGCCAGTACGAGGCTCTCGACCTCTTCCCTCCCTCTGC
TGGGGCAGGACGCGGGGAGGTCGGGAAGGAGGGAGGGGGGGAAAGGGCAG
CCGTGCCCTGGCGGCTGGGCGTGTCGGCAATCCGGCTGATGCCGAAAAAG
AAG GTGAGGGAGGGAGGGAGGGAGGAAGAGGCAGTAGGGCGTGGGATGGA
CAAGGACATGGGCCGTCAGACCGTCTATTCATGACAGTGACCTCTCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTTTGTCCCCGGTCAGGGTGG
CCTCCGCATCATCGCCGACCACGCCAAGGCGCCCGTCGCCGTCCAAGACC
TCCTCCGCTCCAAGGAGGGGGGGAGGGAGGGAGGGGGGGAGGGGGGGTTG
CAGAGAGGAGGGAAGCGATATTCTCTTCTCCCTGTTAACCGGGCCCTCGC
AAACGTGCACCAG GTGAGGGCAGGCGGGAGGGAGGATGGGAGGGAGGGAG
GGAGGGAGGGAGGGAGGGAGGGAGGAATGGAAAGGGACCGAGGAACACGA
GGAACATCACCTACATCTACGGCTGGACACGTCCAGCCACTTTTCACGAC
CAAGCCTCCCTCCCTCCCTCCCTCCCTCCCGCCCTCCCTCAGGTCCTCAA
GTATGAGATGTCGCGTCGTCCGTCCCTGACCGGCGTGGGCGTTCTGGGGC
TCGACGCCATTCACTGCCCCTTGCTGCGATTCGTTGAGCAATTGAGGGGC
AGGACGGGAGGGAGGGAGGGGCGGAAGGAGGGGGGGTGCGGTTGTGCGTG
CCACCGCCTACGTAGGGAGGAGGAGGGGGAGGACGACGGCGAAGGAGGGA
GGACTGGGTCCGGTCGTCCTCTTTACTTCGTGTCGGTGGACGTGCAGCGC
TGCTATGACCATATCCAGGTGCACCGTCTCATGGACATCTTGCGAG GTGG
GGGGGGAGGGAGGGGGGAGGGAAGGAGGGAGAAAGAGCTGGAGGGACTTT
TTTCGATGCCTTGCTATTTAGTGGCTGTCCCTCAAGTCGATGCTCGTCAT
CAGTCTGGTGTCATGCTCTCATTCACTCACTCGCCCACTCCCTCCAACCC
TCCCTTCCTCCCGCCCTCCCACCTCTCAGACACCTTATCTGCGGAGGCCT
ACCACATCCGTCGGTTTGCCGTCTCTCACCCTTTCCGCTCCCGGCACTCG
ATCCACATCAATCACCTCAAGGAGGCTTACCCCGAG GTAGGGAGGGAGGG
AAGGAGGACGGGACGGACGGAAGGAGGCTTGGCCATAGCGAGAGATGGGC
CATCATTTTAACAACGCACACGGACGACAGGGCGGGTGGGAGGCTTTCCC
CGATATTGCCGCGAAGCTATCCCGGCATTATAAG GTACGCCGGCCAAACT
TCCTTCCTCCCTTCTTCCTTCCCTTCCTCCCTCTTTCCTCTCCTAGTACC
TTCCCTCATCCCGCCCCCGGCCCACCCGCCCTCCCTCCTTCCCTCTTTCC
CTCCCCTCCAGGCCGCTGTGATGACGGACGGTGTGATCGAGTCCCGGCTA
TCGCGCGCCGAGGCGTTGACCCTCTTGGAGGAGCACCTGATGTGCAGCTT
TGTCCATCTCCCGCAGCAGCAGCAGCAGCCGCAGCATCTGCAGCAGCGGC
GGCGGAAGGGAGGAGGAGGGATGGAAGGAGGGCGGGAGAAAGGAGCGGGA
GGAAAGCAATGCGGGAGGCGGGTGCTGCGACAG GTAATGAGCCCAGGGAA
GCCTGTCGGTTGCGATGTATCTGCTTCACTTACCCTGCCCTCCCCCCCTC
CCTCCCTTAGATTCGTGGCATTTCTCAAGGCTCGATCCTTTCCCCCGCTC
TGTGCAACCTTTATCTGGGCCAGGCGGAAGGAGAAAAGGCGAGAGGAAGG
GAGGGAGGGAGAGGTCTCGCCTCCCTCGTCCAAGAGGAAGAAAGGGAAGA
GGAAGGAGCGTGTGAGGCATGCCTCTGCAGCGGCCACAGGAAGGAGGGAG
GGAGGGAGGGAAGGGCATCATCGCCCTCTCTAGTGGTGAGGATGATTGAC
GACTATCTCTTCGTATCGACGTCGCGCCAGAAGGCAGTGGCGTTCCTGGA
GAGGGTGTACTCGGCCTTGCCGCCTGTTG GTAAGGAGGGAGGGAGGGAGG
GAGGGAGGGGGGGTTGCGTTGGGCCTGTTTTGACGTGTGTAGCAGAGGGG
GAGGGAGAGAAGGGGGAGTGGAGGGAGAGAGAGAGAGACAGAGAGGGAGA
AAGCAATCTTCAGCCGTCATCCTCATCCACTCGCGCCATGACAGGCATGC
GGGTGCACCCTGACAAGACGAAGACAAATTTCGCTTGCACCGTCCGAGTC
AGGGAAAGAAAGGACGAGAGGGAGGTAGGAGGACAGGCGGAGGACGAGGA
TCGGGGAGAGGGAGGGAATGAAGAGGAGCAGGAGATGAACATAGAGCCGG
CGGAGCTGCCAGTGCTGGTAAGGAGTAAAGAGTTGGGGAGAAGGAGAGGG
AGGGAGGGAGGAAGGGAGCGAGGGCGGGGAGGGAGGTGA back to top Coding sequence (CDS) from alignment at chr4:1486112..1494554+
>NO04G05270.2 ID=NO04G05270.2|Name=NO04G05270.2|organism=Nannochloropsis oceanica|type=CDS|length=3984bp|location=Sequence derived from alignment at chr4:1486112..1494554+ (Nannochloropsis oceanica) back to top