Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr4 genome chr4:1423351..1427390 +
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G05110.2 vs.
Match: EWM28922.1 (EF-Hand 1, calcium-binding site [Nannochloropsis gaditana])
HSP 1 Score: 352.8 bits (904), Expect = 1.700e-93
Identity = 211/404 (52.23%), Postives = 248/404 (61.39%), Query Frame = 0
Query: 78 MTDVLSACDIDYVCLGNHETDIPHRAMLERVAESNFVWINSSMPALPLLDVPLDATKLPDHAVIEAGDTRVALLGLLTDDPSLYRPNSFGSAAILPLI-------PTAERLREKLYQTGNVDCVLAMTHQSIAMDRILARKRLFPLILGGHDHEPYIETYAKGGREGEREEGQQDGGSYCRIPWSAASLEEEEGGRAGLSARSTLVKVGMDAKCFGFVDVAFLQEEGEWEEEGEGEGEEEREGEGGPSKRRRRKRLLSPEVTVKTREAITFEPDATVNARVAVHLRVLEELERAKLCRVPTGMPLSSKGVRKMQTSVGSMLLTAARKALQVDCCFVNGGNIRAGVAYPITQKHFSYKDLKAEIPFSCNMVTLRVPGAILSSLLQFSRRFSLLDPPVEKGGFLQV 475
M DVL+AC +DYVCLGNHETDIPHR MLER+ ES+FVWINSS+P+LPLLDVPL+ K+P++A++E G VALLG S+ + PLI P E E + G G P + + G E ER EG+++ +S R TLVKVGMDA G VDVAF EEG EG EG E G+ G KRRRR+RL EV +EA +F D V RV VH RVLEELERA LC VP PLSSKGVRKMQTSVG+MLLTAAR+ALQVDC FVNGGNIRA VAYP++QK F+YKDLKAEIPF C MVT+R+PG++LSSLLQ+SR+F+LLDPPVEKGGFLQV
Sbjct: 1 MVDVLNACGVDYVCLGNHETDIPHRDMLERIVESDFVWINSSIPSLPLLDVPLEPQKIPEYALLEVGGIEVALLGNAEGKDSIAADRELAQTRLFPLILGGHDHDPFLETYGEGGREGGKEGSPGG----------------------GWSSRIPSAASLQEWGGERERVEGEKE-----------------------VSERCTLVKVGMDATWIGVVDVAFGAEEG--GAEGGAEGGREDGGDAGNGKRRRRRRL---EVKACIKEAASFAVDPAVQERVEVHWRVLEELERAVLCPVPAQTPLSSKGVRKMQTSVGTMLLTAARQALQVDCVFVNGGNIRASVAYPLSQKVFTYKDLKAEIPFPCEMVTVRLPGSVLSSLLQYSRQFALLDPPVEKGGFLQV 354
The following BLAST results are available for this feature:
BLAST of NO04G05110.2 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
200 400 600 800 1000 1200 1400 1600 1800 2000 2200 Expect = 1.70e-93 / Id = 52.23 Sequence EWM28922.1
Match Name E-value Identity Description
EWM28922.1 1.700e-93 52.23 EF-Hand 1, calcium-binding site [Nannochloropsis g... [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO04G05110.2 ID=NO04G05110.2|Name=NO04G05110.2|organism=Nannochloropsis oceanica|type=mRNA|length=2269bp AACACAAACACAGGCCCACTTCCACTAAGCGTCAAGTGGCTTCTCTGCCG GTCTCCCAGCTGTCTGTCGCACCTGTCCAAGCAGCCCAAAGCTGCCTCCC GCCCAAGCCCATGACCAACACGACTAGCACTCGCAACAAGCGTGTAATCA TACGTTTCTTGACAATCAATGACGTCTACGAGCTTGACAATCTGCCTCGG TTCGCGACCGCCGTCCGCGAGACACGTGCGGCAGCGCGAAAAGAGGAGGG GGAAGGGGATGTGGTGATCAAAGTATTGGCGGTCGTAGCGGGTGATTTCC TTGCGCCGTCCTTGTTGTCCTGCTTGGACGATGGCAGAGGCATGACGGAC GTCTTGAGCGCCTGTGACATTGACTATGTTTGCCTGGGCAACCACGAGAC TGATATACCCCATCGGGCTATGCTAGAGCGAGTCGCAGAGAGCAATTTTG TCTGGATCAATTCTTCCATGCCGGCCTTGCCGTTGCTGGACGTGCCGCTG GACGCCACCAAGCTGCCTGACCACGCCGTGATTGAAGCTGGGGACACTCG AGTGGCCTTGCTGGGCCTCCTCACCGACGATCCTTCCCTTTACCGGCCCA ATTCTTTCGGGTCCGCGGCGATCCTTCCCCTTATCCCCACGGCCGAACGC CTGCGCGAGAAGCTCTATCAGACAGGAAATGTGGATTGTGTGCTGGCCAT GACGCATCAGTCCATTGCCATGGATCGCATTTTGGCGCGAAAACGCCTTT TCCCCCTTATTTTGGGAGGCCACGACCACGAACCCTACATAGAGACTTAC GCGAAGGGAGGGAGGGAGGGAGAGAGGGAGGAAGGGCAGCAGGACGGTGG AAGCTATTGCCGGATCCCTTGGTCGGCGGCGTCGCTGGAGGAGGAGGAGG GCGGGAGGGCGGGGTTGTCGGCGAGGAGCACCTTGGTCAAGGTGGGCATG GACGCGAAGTGCTTCGGATTTGTGGACGTGGCATTTCTTCAGGAGGAGGG GGAGTGGGAGGAAGAGGGGGAGGGGGAGGGGGAGGAAGAGAGGGAGGGGG AGGGAGGGCCGAGCAAGAGGAGACGGAGGAAAAGGTTGTTGAGCCCTGAG GTGACGGTGAAGACCAGAGAGGCCATTACCTTTGAACCGGACGCGACGGT GAACGCGCGAGTGGCGGTGCACTTGAGAGTGTTGGAGGAGTTGGAGCGCG CGAAACTTTGTCGGGTCCCGACGGGCATGCCTCTTTCCTCCAAGGGCGTC CGAAAGATGCAAACGTCCGTGGGCTCCATGCTTCTGACAGCGGCTCGAAA GGCCTTGCAGGTGGATTGTTGCTTCGTTAATGGCGGCAACATCAGGGCTG GCGTGGCCTATCCCATCACACAGAAGCACTTCAGCTACAAAGATCTCAAA GCCGAGATCCCTTTCTCTTGCAACATGGTGACACTCCGTGTGCCAGGTGC CATCCTCTCCTCTCTACTCCAGTTTTCGCGTCGATTTTCCCTTCTTGACC CGCCCGTGGAAAAAGGAGGATTCTTGCAGGTACCGAGGGAGGGATGGAGG GAACGAACGAACGAACGAGGGAGGAACGAAGGGGGAATGGTTTATCACAT GCAACTTCCTTAAAATGAGACGACGCGCGAGGACATTGCGCAAGCCTTTC ATTCTCAACATTGCGAGCCCTCCCTCCCCTTCCCCCACGTCCCTCCTTCC CTTCTTTCCTCTTGCCCTCCTCAGGTGGACAACGGCGTCCACACCGATCC GTCCTCCCACGCTATTACGCACATCATGCACCAGCCCCTGGACCCCTCCA AGACATACTCCATGGCCACCACCTGGGGTGTCATTTCGGGGATCGACGAC CTCCGACCCATCTTAGGTAGGTAGATAGCTGGTCGTGGAGGGAAAGCGGG CAAGGAGAGGACGGCAGAGGTGAAGGAAATCTGACCTTGGCCTCTTTTCC TTGGCATGTTCCTCAGACTACATTAAGGACCACCCGGAGATGGACTTTCC GTCGTCGCCTGATTGCGGCCGAGGCCTGAAGGAAGTGCTGGTGGCATACC ACAGTCGCACCCTGTGGTGGAATTTGGCCAAACAGATAGGGTTTAAAGCC ATGGACACGAATGGGGATGGAGTCCTGTGCCGGAAGGAGGTGGAGGCTGC AACACGCGTAAGTTTATTAAATTTGATGTAACTCTGCGTAAAGCCTTTTG CCACAATGCACCTGTACAAACAGACCATAAACAGAAGGCCTCTTGCGCGA TCATGTGGGTTGTCTCGGG back to top protein sequence of NO04G05110.2
>NO04G05110.2-protein ID=NO04G05110.2-protein|Name=NO04G05110.2|organism=Nannochloropsis oceanica|type=polypeptide|length=501bp MTNTTSTRNKRVIIRFLTINDVYELDNLPRFATAVRETRAAARKEEGEGD VVIKVLAVVAGDFLAPSLLSCLDDGRGMTDVLSACDIDYVCLGNHETDIP HRAMLERVAESNFVWINSSMPALPLLDVPLDATKLPDHAVIEAGDTRVAL LGLLTDDPSLYRPNSFGSAAILPLIPTAERLREKLYQTGNVDCVLAMTHQ SIAMDRILARKRLFPLILGGHDHEPYIETYAKGGREGEREEGQQDGGSYC RIPWSAASLEEEEGGRAGLSARSTLVKVGMDAKCFGFVDVAFLQEEGEWE EEGEGEGEEEREGEGGPSKRRRRKRLLSPEVTVKTREAITFEPDATVNAR VAVHLRVLEELERAKLCRVPTGMPLSSKGVRKMQTSVGSMLLTAARKALQ VDCCFVNGGNIRAGVAYPITQKHFSYKDLKAEIPFSCNMVTLRVPGAILS SLLQFSRRFSLLDPPVEKGGFLQVPREGWRERTNERGRNEGGMVYHMQLP * back to top mRNA from alignment at chr4:1423351..1427390+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G05110.2 ID=NO04G05110.2|Name=NO04G05110.2|organism=Nannochloropsis oceanica|type=mRNA|length=4040bp|location=Sequence derived from alignment at chr4:1423351..1427390+ (Nannochloropsis oceanica) AACACAAACACAGGCCCACTTCCACTAAGCGTCAAGTGGCTTCTCTGCCG
GTCTCCCAGCTGTCTGTCGCACCTGTCCAAGCAGCCCAAAGCTGCCTCCC
GCCCAAGCCCATGACCAACACGACTAGCACTCGCAACAAGCGTGTAATCA
TACGTTTCTTGACAATCAATGACGTCTACGAGCTTGACAATCTGCCTCGG
TTCGCGACCGCCGTCCGCGAG GTACGTCAGCAGCTTCAGTGCCAGGAATG
CGTGTCGAGGGGGAAGGCGAGAGAAAAGCGGAAACGAATGCAACGGGGAG
ACTCGACGTGGATCTGTGAATGGAAAGTGTGAATGTATGCATTAGACCTG
TGATTGATCTGGGAGAGCTGTGGGAGAAATATAAAAAAAAACACTTGTAA
ACAAGACCCTCCCTTACCACATGGCACAGACACGTGCGGCAGCGCGAAAA
GAGGAGGGGGAAGGGGATGTGGTGATCAAAGTATTGGCGGTCGTAGCGGG
TGATTTCCTTGCGCCGTCCTTGTTGTCCTGCTTGGACGATGGCAGAG GTA
CGTGAATAAAAGAGTGGGGGTTGGGGGAGGAAAGAGAGAAGGAGTCAGAG
TGGAGGAGCCAGGGACTGCTCGCCATGTCCGCACTTTTGAGAAATGCATG
CCATAATGGACTCTATGAACATATCTCTCTCCCCGTCAACTTTCCCAGAA
GACTGTTGTTTTATACCGAATCCGCTCTCCTTCCGCTCTCTCCCTCTCTT
CTTCCTTCCTTCTGTCCTCGCCCCTGCAGGCATGACGGACGTCTTGAGCG
CCTGTGACATTGACTATGTTTGCCTGGGCAACCACGAGACTGATATACCC
CATCGGGCTATGCTAGAGCGAGTCGCAGAGAGCAATTTTGTCTGG GTAGG
GCTAGTAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAAGGAGGAGTAG
GCACATTTGCGATCCTCCTTCATGCCTCAAACAGCAAGCCGGTTGGTGCT
ATAATGACGACCCCCTCCTTCTTTCCCCTTTCCCCTTCTTCTTCTTCTTT
CTCTAGATCAATTCTTCCATGCCGGCCTTGCCGTTGCTGGACGTGCCGCT
GGACGCCACCAAGCTGCCTGACCACGCCGTGATTGAAGCTGGGGACACTC
GAGTGGCCTTGCTGG GTAAGGAGGGAGGGAGGGAGGAGGGGAGGGAGAGA
TAGGTGGAAGGGGGATAACGGAATGAAGTCAAAAGAGGGAGGCCAGGCTT
TCGACCACTGACCCCGCCGGTTGTCATCGCCCTTCCTCCCCCCTGCCTCC
CTCCCGCCCTCCTTCCAGGCCTCCTCACCGACGATCCTTCCCTTTACCGG
CCCAATTCTTTCGGGTCCGCGGCGATCCTTCCCCTTATCCCCACGGCCGA
ACGCCTGCGCGAGAAGCTCTATCAGACAGGAAATGTGGATTGTGTGCTGG
CCATGACGCATCAG GTAAAGAGCGGGGAGGGGGAAAGAAGGGAGGGAGGG
AGGAGGGACTGGAAACTGGTGCGTATAGACTTTTACCATTGGAATTGCTT
TCACCCTACTCACCCCTCGCTCCTTCCCTCCCTCTCTTCCTCCCCACGTT
CTGGCAGTCCATTGCCATGGATCGCATTTTGGCGCGAAAACGCCTTTTCC
CCCTTATTTTGGGAGGCCACGACCACGAACCCTACATAGAGACTTACGCG
AAGGGAGGGAGGGAGGGAGAGAGGGAGGAAGGGCAGCAGGACGGTGGAAG
CTATTGCCGGATCCCTTGGTCGGCGGCGTCGCTGGAGGAGGAGGAGGGCG
GGAGGGCGGGGTTGTCGGCGAGGAGCACCTTGGTCAAGGTGGGCATGGAC
GCGAAGTGCTTCGGATTTGTGGACGTGGCATTTCTTCAGGAGGAGGGGGA
GTGGGAGGAAGAGGGGGAGGGGGAGGGGGAGGAAGAGAGGGAGGGGGAGG
GAGGGCCGAGCAAGAGGAGACGGAGGAAAAGGTTGTTGAGCCCTGAGGTG
ACG GTACGTGTGGGGTTGAAGGGAAAAAAAAATGAGTTGAGCGCCAGCTT
ACCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCTCCCTCCCTCCTTTTCGA
TTTCCTTTCTCCTACATTTCACGTAGGTGAAGACCAGAGAGGCCATTACC
TTTGAACCGGACGCGACGGTGAACGCGCGAGTGGCGGTGCACTTGAGAGT
GTTGGAG GTAGGGGGGAAGGGCGGGAGGGAGGGCCGTCGGTCGTGGATAC
ACACGCACGCGGGATGGAGGGAAAGAGGGAGTAAAGGAGGGAGGGAACGA
GGGATAAAAGATAGGGAGAGAGACTGACGGTGGTAAGGAATCACCACGAA
CACAGGAGTTGGAGCGCGCGAAACTTTGTCGGGTCCCGACGGGCATGCCT
CTTTCCTCCAAGGGCGTCCGAAAG GTGGGTCGTGTGTGGGTGGTTGGGAG
GGAGGAGGGAGGGAGGGAGGGGAGAAAGGAAGGAGGGAAGGAAAGGAAAG
TGAATCATGTACGAGGCCGTGCAATCATATAAATGAGTTTACAAAGGATT
TCCTCCATTTTCCCCTCCCTCTTGTCTTCCTCCCTCTCGCCCTTCCTCCT
CCACAGATGCAAACGTCCGTGGGCTCCATGCTTCTGACAGCGGCTCGAAA
GGCCTTGCAG GTAAGAGGGATGAGGGTGGGGGGGGAGGGAGGCACGGAAT
TAGGGATAAGCGAAGGGGGGCGAGGCGGGTGGCTGGGGGGTAGAGGAGGG
CAAGGAGTTAGTGGAGAAAGGTGATAGTGGTTGTTGTTGACCGTTGATCA
CCCATTGGTTATTCATATGCCGTCCTTCCTTCTCGACCTCCCTCCCTCCC
TCCCTCCCGCCCTTCCTCGGTGTCCAGGTGGATTGTTGCTTCGTTAATGG
CGGCAACATCAGGGCTGGCGTGGCCTATCCCATCACACAGAAGCACTTCA
GCTACAAAGATCTCAAA GTACGATCCCGCTCCCTCCCTTCCTCCCTCCCT
CCCTTCCTTCCTGCTTTCCTCACTTCCTTCCTTCATCCCCCCCCCCTCCC
TCCCTCCCTCCCTCCTCAATCTTCCACCCCCTTACATGGAAAACACCCTC
CCACTTGTCCTGCACCCTCCCTCCCCCTTATCCCTTCTTCCCTTGCTCCT
TCCCTCCCTCCCCTCCTTCAGGCCGAGATCCCTTTCTCTTGCAACATGGT
GACACTCCGTGTGCCAGGTGCCATCCTCTCCTCTCTACTCCAGTTTTCGC
GTCGATTTTCCCTTCTTGACCCGCCCGTGGAAAAAGGAGGATTCTTGCAG
GTACCGAGGGAGGGATGGAGGGAACGAACGAACGAACGAGGGAGGAACGA
AGGGGGAATGGTTTATCACATGCAACTTCCTTAA AATGAGACGACGCGCG
AGGACATTGCGCAAGCCTTTCATTCTCAACATTGCGAGCCCTCCCTCCCC
TTCCCCCACGTCCCTCCTTCCCTTCTTTCCTCTTGCCCTCCTCAGGTGGA
CAACGGCGTCCACACCGATCCGTCCTCCCACGCTATTACGCACATCATGC
ACCAGCCCCTGGACCCCTCCAAGACATACTCCATGGCCACCACCTGGGGT
GTCATTTCGGGGATCGACGACCTCCGACCCATCTTAGGTAGGTAGATAGC
TGGTCGTGGAGGGAAAGCGGGCAAGGAGAGGACGGCAGAGGTGAAGGAAA
TCTGACCTTGGCCTCTTTTCCTTGGCATGTTCCTCAGACTACATTAAGGA
CCACCCGGAGATGGACTTTCCGTCGTCGCCTGATTGCGGCCGAGGCCTGA
AGGAAGTGCTGGTGGCATACCACAGTCGCACCCTGTGGTGGAATTTGGCC
AAACAGATAGGGTTTAAAGCCATGGACACGAATGGGGATGGAGTCCTGTG
CCGGAAGGAGGTGGAGGCTGCAACACGCGTAAGTTTATTAAATTTGATGT
AACTCTGCGTAAAGCCTTTTGCCACAATGCACCTGTACAAACAGACCATA
AACAGAAGGCCTCTTGCGCGATCATGTGGGTTGTCTCGGG back to top Coding sequence (CDS) from alignment at chr4:1423351..1427390+
>NO04G05110.2 ID=NO04G05110.2|Name=NO04G05110.2|organism=Nannochloropsis oceanica|type=CDS|length=1503bp|location=Sequence derived from alignment at chr4:1423351..1427390+ (Nannochloropsis oceanica) ATGACCAACACGACTAGCACTCGCAACAAGCGTGTAATCATACGTTTCTT GACAATCAATGACGTCTACGAGCTTGACAATCTGCCTCGGTTCGCGACCG CCGTCCGCGAGACACGTGCGGCAGCGCGAAAAGAGGAGGGGGAAGGGGAT GTGGTGATCAAAGTATTGGCGGTCGTAGCGGGTGATTTCCTTGCGCCGTC CTTGTTGTCCTGCTTGGACGATGGCAGAGGCATGACGGACGTCTTGAGCG CCTGTGACATTGACTATGTTTGCCTGGGCAACCACGAGACTGATATACCC CATCGGGCTATGCTAGAGCGAGTCGCAGAGAGCAATTTTGTCTGGATCAA TTCTTCCATGCCGGCCTTGCCGTTGCTGGACGTGCCGCTGGACGCCACCA AGCTGCCTGACCACGCCGTGATTGAAGCTGGGGACACTCGAGTGGCCTTG CTGGGCCTCCTCACCGACGATCCTTCCCTTTACCGGCCCAATTCTTTCGG GTCCGCGGCGATCCTTCCCCTTATCCCCACGGCCGAACGCCTGCGCGAGA AGCTCTATCAGACAGGAAATGTGGATTGTGTGCTGGCCATGACGCATCAG TCCATTGCCATGGATCGCATTTTGGCGCGAAAACGCCTTTTCCCCCTTAT TTTGGGAGGCCACGACCACGAACCCTACATAGAGACTTACGCGAAGGGAG GGAGGGAGGGAGAGAGGGAGGAAGGGCAGCAGGACGGTGGAAGCTATTGC CGGATCCCTTGGTCGGCGGCGTCGCTGGAGGAGGAGGAGGGCGGGAGGGC GGGGTTGTCGGCGAGGAGCACCTTGGTCAAGGTGGGCATGGACGCGAAGT GCTTCGGATTTGTGGACGTGGCATTTCTTCAGGAGGAGGGGGAGTGGGAG GAAGAGGGGGAGGGGGAGGGGGAGGAAGAGAGGGAGGGGGAGGGAGGGCC GAGCAAGAGGAGACGGAGGAAAAGGTTGTTGAGCCCTGAGGTGACGGTGA AGACCAGAGAGGCCATTACCTTTGAACCGGACGCGACGGTGAACGCGCGA GTGGCGGTGCACTTGAGAGTGTTGGAGGAGTTGGAGCGCGCGAAACTTTG TCGGGTCCCGACGGGCATGCCTCTTTCCTCCAAGGGCGTCCGAAAGATGC AAACGTCCGTGGGCTCCATGCTTCTGACAGCGGCTCGAAAGGCCTTGCAG GTGGATTGTTGCTTCGTTAATGGCGGCAACATCAGGGCTGGCGTGGCCTA TCCCATCACACAGAAGCACTTCAGCTACAAAGATCTCAAAGCCGAGATCC CTTTCTCTTGCAACATGGTGACACTCCGTGTGCCAGGTGCCATCCTCTCC TCTCTACTCCAGTTTTCGCGTCGATTTTCCCTTCTTGACCCGCCCGTGGA AAAAGGAGGATTCTTGCAGGTACCGAGGGAGGGATGGAGGGAACGAACGA ACGAACGAGGGAGGAACGAAGGGGGAATGGTTTATCACATGCAACTTCCT TAA back to top