Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr4 genome chr4:1327447..1333120 -
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G04860.1 vs.
Match: EWM28877.1 (lactase-phlorizin hydrolase [Nannochloropsis gaditana])
HSP 1 Score: 887.1 bits (2291), Expect = 3.500e-254
Identity = 470/700 (67.14%), Postives = 534/700 (76.29%), Query Frame = 0
Query: 1 MADRSLTTGMRTQRGEWFRSVAPPVVVVCALAGLASGLYIFLGTNPFVYRVPPSVEG--TGKPSMQCSLYQDPTDPTSIINMPDKEVFDSKDTKFPAEFAWGTATSAYQIEGAWDEDGRGESIWDTFAHTKGKVEGNQNGDVACDHYHLYKEDVALMKELGIKHYRFSISWSRIIPDGTGNVNFKGLEWYSGLVDELLANGIEPYVTLYHWDLPEKLQERHQGWWSQVTSDAFAEYADIVFNHLGDRVKYWITLNEPWCSALLGYGIGVHAPGIKNIKSGAYLAGHNLLLAHSKAVKVYKTKYQAAQGGKIGITINSDYKQCACETSQDKEAAERSQIFVMGWFADPVFFGDYPEEMRKTCGDRLPSFTAEEKANLRGSLDFLGLNHYTTALVSHPLFRASSGNYYTDMGTMDSSDKSWPVGESGWLKDVPWGFRKLLVWIKARYNDPIIYITENGVSGPKEDEVKSDAEGLNDTFRQTFMQGYIAEMYKAIKFDKVNVAGYFYWALMDNFEWADGYRPRFGIIRVNFTSQARYPKESALMYKDMMTRFS--PTEAVPVIPTTPAAGAAAAEEANPAGPVAPIAPIGEDVSPAQPARVSVVPAAGAPSTVQDAATV---ADLQEGLIAAADAAAAAAAAAAAAAAAADAAAADASAAAPVTQ-GVPMDSAGVAQTHVLAEELQGFEEGEEGVMEVEVGEE 693
MAD T M +QR W R+V PV +V +L +A +Y LG+ +YR P S +GK SMQC +YQDP DPTS INMP KEVF S T+FP+ FAWG ATSAYQIEGAWDEDGRG SIWDTF+HTKGKVE N+NGDVACDHYHLYKEDVA+MK LGI +YRFSISW RI+P GTGNVNFKGLE+YS LVDELLANGIEPY TLYHWDLP+ LQ++H GW+S VTSDAFAEYAD+VF+ LGDRVKYWITLNEPWCSALLGYGIGVHAPGIK+IKSGAYLAGH+LLLAHSKAVK+Y+ KYQ QGGKIGITINSD+KQ C+ + DK AAERSQIFVMGWFADPVF GDYPEEMRKTCGDRLPSFT EEKA+L+GSLDFLGLNHYTTALV+ PLFR + GNYYTDMGTMDSSDKSWPVGESGWLKDVPWG RKLLVWI+ RY+DP+IYITENGVSGP E VK D+EGL+DTFRQ+FMQGYI E+YKAI +DKV V GYFYW+LMDNFEWADG+RPRFG++RVNFTSQAR+PKES+ MY++MM R + P E PV+PT PA AA A GPV P+A GED P ++ A A S +DA V ++EG AA D AA A + A AS + G+P A VA +E +EG E E G E
Sbjct: 1 MADE--TQLMPSQRRGWLRNVFAPVTLVTSLVAVAVAVYFVLGSKSLIYRRPGSSSSLESGKTSMQCKVYQDPADPTSTINMPSKEVFASNLTQFPSGFAWGAATSAYQIEGAWDEDGRGLSIWDTFSHTKGKVENNENGDVACDHYHLYKEDVAVMKALGITNYRFSISWPRILPSGTGNVNFKGLEFYSDLVDELLANGIEPYATLYHWDLPQALQDKHDGWYSPVTSDAFAEYADVVFDALGDRVKYWITLNEPWCSALLGYGIGVHAPGIKDIKSGAYLAGHHLLLAHSKAVKLYREKYQVLQGGKIGITINSDFKQYYCDNTLDKAAAERSQIFVMGWFADPVFLGDYPEEMRKTCGDRLPSFTEEEKADLKGSLDFLGLNHYTTALVASPLFRTNGGNYYTDMGTMDSSDKSWPVGESGWLKDVPWGLRKLLVWIQNRYDDPLIYITENGVSGPGESSVKKDSEGLDDTFRQSFMQGYIGELYKAIAYDKVQVGGYFYWSLMDNFEWADGFRPRFGLVRVNFTSQARFPKESSFMYQEMMARVTPPPPEPEPVVPTVPAVPAA----AEGTGPV-PVA--GED-----PGGMAGGGEAAADS--EDAVGVDGDVSIEEG--AAGDGAAIGAGESPATEERGSGLDPLASIPPEAPEDGLPSTDAAVA---AASEAKLQVKEGGNPQEEEEAGRE 679
The following BLAST results are available for this feature:
BLAST of NO04G04860.1 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
500 1000 1500 2000 2500 3000 Expect = 3.50e-254 / Id = 67.14 Sequence EWM28877.1
Match Name E-value Identity Description
EWM28877.1 3.500e-254 67.14 lactase-phlorizin hydrolase [Nannochloropsis gadit... [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO04G04860.1 ID=NO04G04860.1|Name=NO04G04860.1|organism=Nannochloropsis oceanica|type=mRNA|length=3391bp back to top protein sequence of NO04G04860.1
>NO04G04860.1-protein ID=NO04G04860.1-protein|Name=NO04G04860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=702bp back to top mRNA from alignment at chr4:1327447..1333120-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G04860.1 ID=NO04G04860.1|Name=NO04G04860.1|organism=Nannochloropsis oceanica|type=mRNA|length=5674bp|location=Sequence derived from alignment at chr4:1327447..1333120- (Nannochloropsis oceanica)ATGGCAGATCGATCCCTCACCACTGGCATGCGCACTCAGAGAGG
CGAATGGTTTCGCAGCGTTGCTCCTCCTGTCGTGGTGGTGTGTGCGTTGG
CAGGACTGGCCTCTGGCCTCTACATATTCCTAGGCACTAATCCATTTGTC
TATCGCGTTCCTCCTTCCGTAGAGGGGACTG GTATGGACGGGGGTCTGGA
GGGAGGGAGGGAGGAAAGGCGGGCGGGAGTGCAGGAGGGGAGAAAGAAGG
GAGAATGAAATAAATAGGGGGAGAGCATTTCTATAGAGGACATCAGCCAG
ACTAGACGGCACATAATGTGTTCCTCGTTCTCTAAACTCTCCTCTTCCCT
TCTCCCTCCTTCTCTCCTTCCCTCCTGCTCCCCCTTCTCCAGGAAAGCCC
AGCATGCAATGCAGCCTTTATCAAGACCCCACCGATCCTACGTCTATCAT
TAATATGCCCGATAAAGAGGTGTTTGACAGCAAGGATACCAAGTTCCCGG
CAGAGTTCGCGTGGGGTACGGCCACGAGTGCTTATCAGATAGAAGGAGCT
TGGGACGAGGATGGACGGGGAGAATCCATTTGGGACACGTTTGCGCATAC
AAAG GTGGGTAAGTGGGAGGGAGGGAGGGAGGGAAGGAGGGCCTTTATTG
GAGGAGGGCCAGGACTCAGGCTTTTGTTCCCTTTGTGCCTTCCCCTCCTC
GTATAGGGCAAGGTGGAGGGCAATCAGAACGGGGACGTGGCATGCGACCA
CTACCATCTCTACAAAG GTACGTATGCTCTCCTCTTTCCCCTCCTTCTTC
CCTCTTTCCCTTCCCTCTCTCCCTTTGTATGTCTGCTCCGATTCAATGGC
AATGGAGCGAAGGGTTGGGCTCTTGATCCTCTTTGACTCGCCCAGGATAC
TTCCCTCCCTCTCTCCTTACCCCCCTCCCCCCCTCCCTTGTAACGTTCCA
AACCACCATATTTCTCTCCCGTGTTTCTCTGCATCCACCCGTCCGCCCCT
CTTTCCCTCCCTCCCTCCCTCCCTCCCCCCCTCCCTCCCTTGCAGAGGAC
GTGGCCCTCATGAAGGAGCTTGGCATTAAACATTATCGATTCTCCATATC
TTGGTCTAGAATCATACCTGATGGCACGGGGAACGTCAATTTCAAG GTAA
GCCGTCTGTCCGTCCGTTCCTCCCTCCCTCTCTCCCTACTTCCTCCCTTT
GCTCCCTCTTTCCCTGCATGTATTTTTTCTTGGTCGCACATTTTCAAGAA
ATCGACCCTAACGACACCGCCCGCCCTCCCTCCGTCCCCCCCTCTTTCCC
TCCCTCCCTCCCTAGGGCCTGGAGTGGTACAGCGGCCTCGTGGACGAGTT
ATTAGCGAACGGCATTGAGCCCTACGTGACTCTCTATCACTGGGATCTAC
CGGAGAAACTGCAGGAGCGGCACCAGGGCTGGTGGTCGCAGGTGACGAGC
GACGCCTTTGCTGAGTATGCCGACATTGTCTTCAATCATTTGG GTGAGGG
AGGGCGGGAGGGAGGGAGAGCGGGAGGGAGGGAGGGAGGGAGGGAGGGAG
GGAGGGAGGGAAACATGTTGTCTGAAGCGTCGGGTCGTCTGAGAGGAGCC
TTTTGCCCTAAATGCAAATCTCCTTCCTTCTTCCCTCCCTTCCTCCCTCC
CTCCCTCCCTCCCCCTTTGGTCCTCAGGCGACCGTGTCAAGTATTGGATT
ACGTTAAACGAGCCCTGGTGCTCTGCCCTTCTAGGGTACGGCATCGGAGT
CCACGCTCCGGGTATCAAAAACATCAAGTCAG GTAAAACGCTCATCCTTT
GTTTCCCCTCGTTCTTCTCTCTCTTTCCCTCCCTCCCTCTCTTCCTCCGC
CCCACTGTCCCCTCGTGCCTTTCGCTCCATCAGGCTGCTTACGCATCTTC
CCCCACCTGCACCCCTCACTCCTTTCCTTCTTTCGCTCCCAAGGCGCCTA
CCTCGCGGGCCACAACCTCTTGCTCGCGCACTCCAAAGCCGTCAAGGTCT
ATAAAACCAAATACCAAGCAGCGCAAGGGGGAAAGATCGGGATCACCATC
AACAGTGATTACAAACAG GTAGGTAGGTAGGGAGGGAGGGAGGGAGGGAG
GGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGGGGTATATCTCGAGCC
TGCGCTACTTTTCGCCTCCCCTCTTTGTTGATTCCTCCTGCCTGTCTCAT
TTCCATACAATCCCTCCCTCCCTCCCTCCCTTCCTCCCTCCCTCCTTCAG
TGCGCCTGTGAAACGAGCCAGGACAAGGAGGCAGCGGAGAGGTCTCAGAT
CTTCGTCATGGGGTGGTTTGCCGACCCCGTGTTTTTTGGAGACTACCCGG
AAGAGATGCGGAAGACG GTAAGGAAGGAGGGAGGAAGGGCAGGAGGGCGG
GGGTGGGACGATAATGCTTTTGCGATTGCAGAAGGGTATCAGACACATTT
TGGTCTCTCCTCACCCTCCCTTTCCCCCTTCTTCCCTCCCTCCCCCTCTC
TCTCCCCCTCTCCCTCCTCCTGTAGTGCGGCGATCGCCTCCCCTCCTTCA
CGGCGGAAGAGAAAGCTAATCTGCGGGGTTCATTGGATTTCTTAGGCCTT
AATCATTACACCACGGCCTTGGTGTCACACCCACTCTTCCGCGCGAGTAG
TGGGAATTATTACACGGACATGGGCACTATGGATTCGTCGGATAAG GTGC
ATCTTCCCTCCCTCCCTCCCTCCCTCTCTTCCTTCCTTCTTTTCTCTCTT
TCTTTGTGTTCTATCCCCTCTCCACCCCCTCGCGCCCATTGAGCTCGCCA
AGTCGAATAATGGATGGAGAGGGAGGGAGAAAAGGAGAAAAGGAGGGAGG
GGACAAGGATGAGGGTCATATCCGTTAATTTGGGCATTTATTCACTCCTC
CCTCCCTTCCTCCCTCCCTCCCTCCTCCTCCCCCCTTCCTAGTCCTGGCC
TGTGGGTGAGTCCGGCTGGCTTAAGGATGTCCCCTGGGGATTCCGCAAGC
TCTTAGTCTGGATCAAGGCGCG GTACGTCCCTCCTTCCCTCCCTCCCTCC
CACCCTCCCTCCTTCCCTCCCTCTCTCCCTCCCTCCCTCCCATCCACCTT
TTCCTCTCACCTCCTTCCCCTTCCCCTCCTTCCCCTTCTCCTCCTTTCTT
CCCTCCCTCCCTCGCTTAGATACAACGATCCGATCATCTACATCACCGAA
AACGGCGTCTCGGGTCCCAAGGAAGATGAAGTTAAATCAGATGCAGAAGG
CTTGAACGACACCTTCCGTCAG GTGGGCCCTCCCTCCAACCCTCACTCGT
TCCTCCTTCCCCTTCCCTCCCGCTCTATCTTCCTCGTTCTTTCCCTCTCG
TCCTCCTGCCTTCTCTCTGTCTGCCGTACTCATCGACAAAAAATGACTTT
TATTCCCTCCCATCCCCACGTCATATCCATTTCCCTATATCATCCTTCAC
CTGCCTAATCTCAATCACGGCGTTTCCCTATATCACCACCACCTACAGAC
GTTTATGCAAGGCTATATCGCTGAGATGTACAAGGCCATCAAGTTCGACA
AG GTACGGCCCTTCCCTTCCTCCCTCCCTCCCTCCCTCACCTCCCTCGCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCTTCAGGTCAAGGGCGCAGGGTAT
TTCTACTGATCCTCTCTGTGTGCTTCGCATAATTTCCTCTAACCACTCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCTCTTCCTTCCTCCCCCCCTCC
CTCTCTCTCTCCTTTCCTCAGGTTAATGTCGCAGGATATTTCTACTGGGC
TTTAATGGATAATTTCGAATGGGCCGACGGTTACCGCCCTCGTTTCGGGA
TCATCCGTGTGAATTTCACCAGCCAAGCTCGCTATCCTAAGGAAAGCGCA
CTCATGTATAAGGATATGATGACTCGTTTCTCACCTACCGAGGCCGTGCC
GGTCATCCCTACTACTCCTGCTGCTGGTGCAGCTGCTGCTGAAGAAGCAA
ATCCCGCTGGGCCTGTTGCACCTATAGCTCCGATTGGTGAAGATGTTTCT
CCTGCCCAGCCGGCCCGGGTGTCAGTAGTACCAGCAGCAGGCGCTCCTTC
TACTGTACAAGACGCTGCCACTGTTGCAGATTTACAAGAAGGACTTATCG
CTGCTGCTGATGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCT
GCTGCCGCTGATGCTGCTGCTGCTGATGCCTCAGCCGCTGCGCCTGTCAC
TCAGGGTGTTCCCATGGATAGTGCCGGTGTGGCCCAAACCCACGTGCTTG
CGGAAGAGCTTCAGGGATTCGAGGAGGGAGAGGAGGGAGTGATGGAGGTG
GAGGTGGGTGAGGAGGGAGGACAGCAACGATTGCGGAAGCTGTAG back to top Coding sequence (CDS) from alignment at chr4:1327447..1333120-
>NO04G04860.1 ID=NO04G04860.1|Name=NO04G04860.1|organism=Nannochloropsis oceanica|type=CDS|length=2106bp|location=Sequence derived from alignment at chr4:1327447..1333120- (Nannochloropsis oceanica) back to top