Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr4 genome chr4:1304798..1309638 -
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G04790.2 vs.
Match: EWM28872.1 (multi-sensor hybrid histidine kinase [Nannochloropsis gaditana])
HSP 1 Score: 1048.1 bits (2709), Expect = 1.800e-302
Identity = 618/973 (63.51%), Postives = 716/973 (73.59%), Query Frame = 0
Query: 50 TDDLGRVVREDNGREKASLPPSTTDGQSNGLMVFFQNAFREVYDPEWRGRVRAHCWRSLGGDSSDPLWGPFQYSYLLMALWSAILLVGAVMASAHIVLSGGIVLLWFFTPASILILSIQKRICWPYTCAVLMSVEIVAVSLGHGRISRDTLAGFVLIVVDLANIALGTLLLRPLVSSSIYIVRTSPFVRYLVAYVLIVTPAFSLINGGIIVLLPSNSINWLGGRQLIVAWLLGDFFATYFTVYAVLVFRHTIAQATHDTYRARDLCTYLQHRLRAGGIWLKLRLVEYAGMLILTYIVAQDVATSSNSIREYDLGPRMASRLMFPLLGLVTFRFGQFGSCIALIVASAGIFTVTYGQLDRGNRLTDIFYQIDLLLGPILVVFITWSMTFLAVALAEKQDGLNLLEQRNFQLLMQGRELQQAKLEAQRALSTKTEFFARVSHEFRTPLNIILGFAEEIKRQELPPYVQERIGYIITSGESLLRIVDDILELFRLSSNRLQIDVSVVDIHSYFMTLCDLVQVITDKNQRRLERVLDPSLPRHVLLDKIRFSQLIMNLSSNAAKFTGTGGRIVVRLKE----GRRGGKKGLLMKPAPAMPADTDAGGRREGGREGGMEDGDGKVSTSTPAAVDGSGGSSSSSSGSSGSSSMPSPPPSLPGSSNVDAPSTKSNKSKHKSSTIRSNTANKPLTTPSKEGGKDHTLLATTAGRGLTKGGREGRRKGGRKQHRVIWLRLEVEDDGIGIPQSTQDQIFNCFFSGNQQSGGEKGHGLGLAITKELVDLMKGSIEVTSQVGVGSLFTVDLPVRVV-EGEGREGRGEGKERGQRRAVSLSGGGAGAGRSAAAAAAAAAAAAAVGKDKGGSLLPPRLTSPGAPGGHN-ASLSPSFPSSSHRASPSSYS-CRETRDPSLPPSLLPFLPSNRRLQGLRIMAVEDLLPNQMVLGGMLREDAHHVQFVETAFGALEMLSRHPGHFDVVLL 1016
TD + + R K + +T L+ +A+R +YDP+ R R+RAH +SLG DP+ PF +S+LL ALWS+++L AV+ASAHIVLSGG+VLLWF TPAS L+L IQ R CWPYT ++ VE+ AV LGHGRISRD+LA F++IVVDL NI+LGTLLLRPLV+ SI+IVRTS FVRYLV YVL++TPAFSL+NGGIIVLLPSN+I W+GGRQL+VAWLLGDFFATYFTVYAVLVFR+TIAQAT DTYR RDL YLQ RLRAGGIWL LR+VEYAG+L++TY+VA VATSS S R++ LGPR+ SRLM PLLG VTFRFGQFGSC+ALIVA+AGIFTVTYGQLDRG+RLTDIFYQIDLLLGPI+VV ITWSMTFLAVALAEKQDGL+LLE+RNFQLL+QGRELQQAKLEAQRALS KTEFFARVS+EFRTPLNIILGFAEEIKRQ+LPPYVQERIGYIITSGESLLRIVDDILELFRLSS RLQID S+VDIH+YF T+CDLVQVITDK+QRRLERV DPSLPR+V LDKIRFSQL+MNLSSNAAK TGTGGRIV+RL++ G++GGK G+LM A +A GR E +G +E + V VD GG+ P +PG + ++ +HK T+ K + +P KE G+G+ K GR R+ HRVIWLRLEVEDDGIGIP+STQ+QIFNCF+SGNQ SGGEKGHGLGLAITKELVDLMKGSIEV S+VGVGSLFTVDLPV+V+ E EG+ G++ +R +G AG + A + L P R T P +S +P+ R S S E P P L NRRL GLRIMAVEDLLPNQMVLGGMLRED+H VQFVETAFGALEMLSRHPGHFDV LL
Sbjct: 26 TDVVAKKKRGRGKDRKVGMVVESTPPPPRTLLTRCTHAWRRMYDPDMRERIRAHFGQSLGDLPGDPVCKPFHWSFLLTALWSSLILTAAVVASAHIVLSGGVVLLWFLTPASTLLLCIQARACWPYTFTAIVGVELTAVCLGHGRISRDSLAAFIIIVVDLLNISLGTLLLRPLVAGSIHIVRTSTFVRYLVLYVLLITPAFSLVNGGIIVLLPSNNITWMGGRQLVVAWLLGDFFATYFTVYAVLVFRYTIAQATKDTYRWRDLAVYLQARLRAGGIWLYLRVVEYAGVLVVTYMVAHAVATSSTSPRDH-LGPRIVSRLMIPLLGFVTFRFGQFGSCVALIVAAAGIFTVTYGQLDRGDRLTDIFYQIDLLLGPIVVVLITWSMTFLAVALAEKQDGLSLLEKRNFQLLVQGRELQQAKLEAQRALSAKTEFFARVSYEFRTPLNIILGFAEEIKRQDLPPYVQERIGYIITSGESLLRIVDDILELFRLSSQRLQIDESLVDIHAYFTTMCDLVQVITDKSQRRLERVQDPSLPRYVFLDKIRFSQLVMNLSSNAAKSTGTGGRIVLRLRQVKGRGKKGGK-GVLMNSREAR----EARGREEREGKGVLEVEEKGVR------VDKHGGAGGGKE-----------PGEVPGEERIG-----NDAVRHKKGPGNEKTSPK-IGSPKKEK-------RVAEGKGIGKSGR-------RRSHRVIWLRLEVEDDGIGIPKSTQNQIFNCFYSGNQLSGGEKGHGLGLAITKELVDLMKGSIEVVSEVGVGSLFTVDLPVKVLEEEEGKHSAQNGRQLRRRPRAKRAGSPAGTTQGPEGNGQDPAGVRPPARASTRPLDPARATDPDRDTPPALSSPAPTLLEGDLRTSAVGVSPLMEAPSPFQQP-----LHRNRRLHGLRIMAVEDLLPNQMVLGGMLREDSHSVQFVETAFGALEMLSRHPGHFDVALL 950
The following BLAST results are available for this feature:
BLAST of NO04G04790.2 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
500 1000 1500 2000 2500 3000 3500 4000 Expect = 1.80e-302 / Id = 63.51 Sequence EWM28872.1
Match Name E-value Identity Description
EWM28872.1 1.800e-302 63.51 multi-sensor hybrid histidine kinase [Nannochlorop... [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO04G04790.2 ID=NO04G04790.2|Name=NO04G04790.2|organism=Nannochloropsis oceanica|type=mRNA|length=4115bp back to top protein sequence of NO04G04790.2
>NO04G04790.2-protein ID=NO04G04790.2-protein|Name=NO04G04790.2|organism=Nannochloropsis oceanica|type=polypeptide|length=1040bp back to top mRNA from alignment at chr4:1304798..1309638-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G04790.2 ID=NO04G04790.2|Name=NO04G04790.2|organism=Nannochloropsis oceanica|type=mRNA|length=4841bp|location=Sequence derived from alignment at chr4:1304798..1309638- (Nannochloropsis oceanica)ATGGTTACAATCAGTCCTGGAGGCGTCATCGAGGGGGA
TGATGAGAAGTCACCACCACCCTTGCTTGCTGTAGATGGGAGGGCGAGCG
AGTCTACGGACACCAGCAGCATTCAGAGCAATGGCAGGGACCGGGGCGGG
AGCACGCAAACCGATGATCTCGGACGTGTTGTAAGAGAGGATAATGGCAG
AGAAAAGGCGTCGCTCCCACCATCCACGACAGACGGTCAGAGCAACGGTC
TCATGGTCTTCTTTCAGAATGCTTTCCGGGAAGTGTATGACCCAGAATGG
CGAGGACGGGTGCGTGCACATTGTTGGCGGAGTCTTGGAGGGGATTCTTC
TGACCCCTTGTGGGGGCCTTTCCAATACTCGTACCTGTTGATGGCACTCT
GGTCGGCCATTCTCCTCGTGGGCGCAGTCATGGCCAGTGCCCACATTGTC
CTCTCCGGCGGCATCGTCCTGCTCTGGTTCTTCACACCCGCCTCGATCCT
GATTCTCTCCATCCAAAAGCGGATCTGCTGGCCGTATACCTGTGCAGTCC
TTATGAGCGTGGAAATTGTGGCTGTCTCCCTCGGGCATGGACGTATTTCC
CGTGATACCCTGGCCGGTTTCGTACTCATCGTTGTCGACCTCGCCAACAT
CGCCCTGGGAACGCTCCTCCTCCGGCCCCTTGTCTCTAGCAGCATTTACA
TCGTACGCACGTCACCCTTTGTTCGGTACTTGGTAGCCTACGTCCTTATT
GTTACCCCGGCGTTCTCGCTCATTAATGGCGGCATCATCGTGCTCCTGCC
CTCCAACAGCATCAACTGGCTCGGAGGACGTCAGTTAATCGTGGCATGGC
TACTTGGCGACTTCTTTGCCACATATTTCACCGTCTATGCCGTCCTTGTC
TTCCGGCATACCATTGCCCAAGCCACGCACGACACGTACCGTGCCCGGGA
TTTATGCACGTACTTGCAGCACCGGCTCCGGGCGGGGGGTATCTGGTTGA
AGCTGCGGTTGGTAGAATACGCAGGGATGTTGATCCTCACGTACATCGTC
GCCCAAGACGTGGCCACGTCCTCCAACTCCATCCGCGAATACGACCTGGG
CCCACGGATGGCGTCGCGGTTGATGTTCCCGTTATTAGGCTTGGTAACGT
TCCGTTTCGGCCAGTTCGGCTCGTGCATCGCCCTCATCGTTGCGTCAGCT
GGCATCTTTACCGTGACATACGGACAGTTGGACCGGGGGAATCGCCTGAC
GGACATTTTTTATCAGATTGACTTGTTGCTGGGCCCTATTCTGGTGGTAT
TTATCACCTGGAGCATGACCTTCCTGGCTGTGGCCTTGGCGGAGAAACAG
GACGGGTTGAATCTGTTGGAGCAGAG GTGAGGGGGGAGGGAGGGAGGAAG
GGAGGGGGGGGGAAGGGGATGGGGGATAGGTAAGGGCGTGGTGGCACGAC
TTTCTCCCCGTGCCTGAAGCTTTTCTTTTTTACATCGCCCTCCCTCCTTC
CGTCTCTCCTTCCCTTCTCCCCTCCTTCCCTCCTCTCCCACTAGAAATTT
CCAGCTGCTCATGCAAGGTCGTGAGCTGCAGCAAGCCAAGTTGGAAGCCC
AGCGAGCCCTGAGCACCAAAACGGAGTTCTTTGCCCGCGTCTCCCACGAA
TTCAGGACACCGCTCAATATCATCCTG GTATGTGTAATTCGAGGTCATTC
CCTCCGTCCCTCCCTCCGTCCGTCCCTCCCTCCCTTCCTCATTCTTAGTC
TACCACCTCTTTTTGCGAGAGCTCTTTCATCAAAGAAATTTGGCGACTGG
TCATAGCTTGCCCCATTCAGCATTTGCTTAGCCCCCCCCTCCGTCCCTCC
GTCCCTCCCTCCCTCCGTCCCTCCCTCCCTCCGTCCCTCCCTCCCTCCGT
CCCTCCCTCCCCAGGGGTTTGCCGAAGAGATCAAGCGACAGGAGCTTCCT
CCCTACGTGCAGGAACGGATTGGCTATATCATCACCAGCGGAGAGAGCCT
CCTCAG GTACTTTTCAACTCAAGAAGGAGAGGGAGGGAAGGAGGAAGGGA
GGGATGATCCCCTGTTCAATCGCGTTCGTTTCACACCTCTCCCACTTTCA
ATGTCAGGATCACCGTTCAGTTTCCTCACCTTCCCTCCCTCCTTCCCTCT
CTTTCTCCCTCCCTCCCTCTTTCAGGATCGTCGACGACATTCTGGAACTG
TTTCGCCTGTCGTCGAACCGGCTTCAGATCGACGTGTCCGTGGTGGATAT
CCACTCCTACTTTATGACTCTCTGTGACCTGGTGCAGGTCATCACGGATA
AGAACCAACGGCGACTGGAGAGGGTCCTTGATCCGTCTCTACCCAG GTGG
GGAGGGAGGCAGGGAGGGAGGGAATGAGGGAGGGAGGAAGGAAGGGAGGG
GTGGGTGGGGAGCCCTCGTTAGCCATCAACACCACCAATTTCACTCTTCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCAGAC
ATGTTCTTTTGGACAAGATTCGCTTCTCGCAATTGATCATGAATCTCTCG
AGTAATGCTGCCAAGTTCACTGGCACCGGAGGAAGGATTGTGGTGAGGCT
GAAGGAAGGGAGGAGGGGGGGGAAGAAGGGGCTGTTGATGAAGCCGGCGC
CTGCGATGCCGGCAGATACAGATGCTGGAGGACGGAGGGAAGGAGGGAGG
GAGGGCGGGATGGAGGACGGGGATGGAAAGGTGTCGACTTCGACGCCGGC
GGCGGTGGACGGTAGTGGTGGGAGCAGCAGCAGTAGCAGCGGCAGCAGCG
GCAGCAGCAGCATGCCTTCCCCTCCTCCCTCCCTCCCCGGCAGCAGCAAC
GTCGACGCGCCCTCCACCAAAAGCAATAAGAGTAAGCACAAGAGCAGCAC
CATCAGGAGCAACACCGCCAACAAGCCCCTCACAACGCCCTCGAAGGAAG
GAGGGAAGGATCACACCCTCCTGGCCACCACCGCCGGCAGGGGGCTGACG
AAAGGAGGAAGGGAGGGGAGGAGGAAGGGAGGGAGGAAGCAACACCGGGT
GATCTGGCTCCGCCTGGAGGTGGAGGATGATGGAATAGGCATCCCGCAGA
GCACCCAGGACCAGATTTTCAATTGTTTCTTCTCGGGCAATCAGCAGTCG
GGAGGCGAAAAGGGGCATGGCCTGGGTCTGGCGATCACTAAGGAGCTAGT
GGACCTGATGAAGGGCTCGATTGAGGTGACGAGTCAGGTCGGGGTTGGTA
GTCTCTTCACGGTCGATCTACCCGTGAGGGTGGTAGAGGGGGAGGGGAGG
GAGGGGAGGGGGGAAGGGAAGGAGAGAGGTCAGCGTAGGGCTGTTAGCTT
GTCGGGGGGAGGGGCGGGAGCTGGACGTTCGGCTGCTGCAGCTGCTGCAG
CTGCTGCAGCTGCTGCTGCTGTAGGTAAAGATAAAGGTGGCTCTCTTCTT
CCTCCAAGACTGACTTCTCCTGGGGCTCCGGGTGGCCACAACGCCTCCCT
CTCTCCCTCCTTTCCCTCTTCCTCTCACCGCGCGAGCCCGAGTAGCTACA
GCTGTAGAGAGACACGGGACCCGTCCCTCCCTCCCTCCCTGCTTCCTTTC
CTACCTTCGAATCGACGTTTACAGGGACTTCGGATCATGGCAGTGGAGGA
TTTGCTGCCTAACCAAATGGTTCTGGGCGGTATGCTGAGGGAGGACGCTC
ATCATGTCCAGTTCGTGGAGACGGCCTTTGGGGCGTTAGAGATGCTGTCA
AGGCACCCGGGCCATTTTGACGTGGTTTTGTTGGGTACGTTGTGGAGGCG
TGTATGTGTGTGTGTGTGTGTTTGTCGTCCACGTGCGTGTGAGTATTCTG
AAGTGTAA back to top Coding sequence (CDS) from alignment at chr4:1304798..1309638-
>NO04G04790.2 ID=NO04G04790.2|Name=NO04G04790.2|organism=Nannochloropsis oceanica|type=CDS|length=3120bp|location=Sequence derived from alignment at chr4:1304798..1309638- (Nannochloropsis oceanica) back to top