Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr4 genome chr4:1271780..1275683 +
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G04670.1 vs.
Match: EWM28857.1 (serine threonine-protein kinase cbk1 [Nannochloropsis gaditana])
HSP 1 Score: 738.4 bits (1905), Expect = 1.500e-209
Identity = 379/506 (74.90%), Postives = 428/506 (84.58%), Query Frame = 0
Query: 15 GGRGLVPPGTPGRMSAEAVANDKADRMKAYLEEKYERLRRDKEEEKDRRANLEETMARLNLDEIQKEHYRAELQRMEDEHKREQQRRLTTDDFDPLVIIGRGAFGEVHLVKKKSNGEVYAMKSMIKEAMVRKNQVGHVRAERDVLAVADNPWIVTLHYSFQDEQMLHMVMEFLPGGDLMTLLIREDTFPEAATRQYMAEMVMAVASVHELGYIHRDLKPDNILLDWDGHLKLSDMGLCKKVDLEDSPLLYDGSSISVHASPADGAGACNRAPSPSH----PHHHHHYHHPHCAPHLPTSSASSRRPSTPPPPLVTPTRDRKLAYSTVGTPDYIAPEVLMQKGYGRECDWWSLGVIMYECLVGYTPFYADEPVMTCRKILRWQQHLEVSAEVRSRVSPACLDFMHSLIAPAERRLGRNGLEEIKAHPWFATSGLEWEGLKELEAPYRPEGSEVLRGMMEDLKGVERRDARFQPLIEQITANFDDFPEVEG-----GGGGMRGREGEG 512
GG+G P G ++ +A A DKADRM+AYLEEKYERL+RDKEEE+DRRA+LEETMARLNLD+ QKEHYR EL+RME E++ EQQRRLTT+DFDPLVIIGRGAFGEV LV+K+++GE+YAMKSMIKEAMVRKNQVGHVRAERDVLAVADNPWIVTLHYSFQD+ MLHMVMEFLPGGDLMTLLIREDTFPEAATRQYMAEM+MAVASVH LGYIHRDLKPDNILLDW+GHLKLSDMGLCKK++ ++ LL D +S+S+HASP GAGAC P+ +H PHHH H +P H P S PST P +P RDR+LAYSTVGTPDYIAPEVLMQKGYG+ECDWWSLGVIMYECLVGYTPFYA+EPVMTCRKILRWQQHLEV EVR+RVSPACLDFM SL+APAERRLGR+G EEIKAHPWF SGL+W+ LK APY+PEG EVLR M+EDL+ V + D R++PL+EQITANFDDFPE EG GGGG GR+ +G
Sbjct: 8 GGKGNGPGGE--KVVVDAEAKDKADRMQAYLEEKYERLKRDKEEEQDRRASLEETMARLNLDDAQKEHYRQELERMEAEYRTEQQRRLTTNDFDPLVIIGRGAFGEVRLVRKRADGEIYAMKSMIKEAMVRKNQVGHVRAERDVLAVADNPWIVTLHYSFQDDHMLHMVMEFLPGGDLMTLLIREDTFPEAATRQYMAEMIMAVASVHALGYIHRDLKPDNILLDWEGHLKLSDMGLCKKMETGEAHLLTDNASLSIHASP-HGAGACPTPPASAHFAPPPHHHPHPQYPPLV-HPPPSQTP---PSTSSLPPSSPARDRRLAYSTVGTPDYIAPEVLMQKGYGKECDWWSLGVIMYECLVGYTPFYAEEPVMTCRKILRWQQHLEVPGEVRARVSPACLDFMFSLMAPAERRLGRHGWEEIKAHPWFVESGLDWDALKTAPAPYKPEGWEVLRAMLEDLRQVPKEDVRYRPLLEQITANFDDFPETEGGLGAVGGGGAAGRKEKG 506
The following BLAST results are available for this feature:
BLAST of NO04G04670.1 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
500 1000 1500 2000 2500 3000 Expect = 1.50e-209 / Id = 74.90 Sequence EWM28857.1
Match Name E-value Identity Description
EWM28857.1 1.500e-209 74.90 serine threonine-protein kinase cbk1 [Nannochlorop... [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO04G04670.1 ID=NO04G04670.1|Name=NO04G04670.1|organism=Nannochloropsis oceanica|type=mRNA|length=3445bp back to top protein sequence of NO04G04670.1
>NO04G04670.1-protein ID=NO04G04670.1-protein|Name=NO04G04670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=521bp back to top mRNA from alignment at chr4:1271780..1275683+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G04670.1 ID=NO04G04670.1|Name=NO04G04670.1|organism=Nannochloropsis oceanica|type=mRNA|length=3904bp|location=Sequence derived from alignment at chr4:1271780..1275683+ (Nannochloropsis oceanica)ATGGCGTCGCGGCGGACAGGAACAGCCGGAGCAGTAGGAGGAGGG
GGGAGAGGACTCGTGCCCCCCGGAACGCCTGGGCGAATGTCGGCAGAGGC
GGTAGCCAATGACAAGGCAGATCGGATGAAAGCTTACCTGGAAGAGAAGT
ACGAGCGTCTAAGACGGGACAAGGAGGAGGAGAAGGACCGACGGGCGAAT
TTGGAGGAGACAATG GTAAGCAACTGGGGAAGGAAGAGAGGGCCAAGCGC
CCAGTGACCGAGTTGTCGGCATTTGTTGGCCGAGAAGTGAGATTTGTGGA
CCTTGACTTTTGTGCCTGGTCCACTTACCCAATCCATCGATCCCTCCCTT
TCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCTTGCAGGCCCGCCTCAA
CTTGGATGAGATCCAAAAAGAGCATTACCGGGCAGAGCTCCAACGAATGG
AAGACGAACACAAGCGCGAGCAACAGCGACGCTTGACGACGGATGACTTC
GATCCTTTGGTCATCATTGGGAGGGGAGCGTTTGGAGAG GTAGGGAGGGA
ATGAGGGAGGGAGGGAGGGAGGGGAGGGAGGGAGATTGTGGAGGAGGGGA
AGTAAAAGAGGATGTAAATATGCACGAGAGCAATACAGCAGGCTAGTTAT
CCATTCCTCCTTCCCTCCTATTCTTTGTAGGTTCACCTGGTGAAAAAGAA
GTCCAACGGCGAGGTATACGCTATGAAGTCCATGATTAAGGAAGCCATGG
TCAGGAAGAACCAAGTAGGGCATGTGCGGGCGGAGCGAGACGTTTTGGCC
GTTGCGGATAATCCATGGATTGTCACGTTGCACTATTCCTTCCAAGATGA
GCAG GTACAAAGGGAGGACAGGTGGGAGGGAGGGAGGGAAGGACGAAAGA
GGATGCTTCCACCCGGTACCAATGCGATATAAGAGACTGATTTGATTTGA
AGACTTCACCCTCACCCTCCCTTCCTCCCCTCCTTCCTCCCTTCTCAGAT
GCTCCACATGGTGATGGAGTTCCTCCCCGGTGGGGACCTGATGACCCTCC
TCATCCGGGAAGACACCTTCCCTGAAGCCGCCACCCGTCAATACATGGCC
GAGATGGTTATGGCCGTCGCGAGTGTCCACGAGCTCGGCTACATCCACCG
GGACCTCAAGCCCGACAACATCCTTCTCGATTGGGACGGTCATCTCAAAC
TGAGCGATATGGGTCTGTGTAAGAAGGTGGATTTGGAAGACTCTCCCCTT
CTCTACGACGGCTCCTCCATCTCTGTCCATGCCTCGCCTGCTGACGGTGC
CGGGGCCTGCAATCGCGCTCCCTCCCCCTCGCACCCCCACCACCATCACC
ATTACCACCACCCACACTGTGCACCTCACCTGCCTACCTCCTCCGCTTCC
TCCCGGCGTCCCTCCACCCCTCCTCCTCCCCTTGTCACCCCTACCCGTGA
CCGTAAGCTTGCTTATTCCACCGTAGGCACGCCTGATTACATCGCACCTG
AAGTTCTGATGCAAAAGGGCTACGGCCGTGAATGCGACTGGTGGAGTCTA
GGGGTGATCATGTATGAATGCCTCGTGGGGTACACGCCGTTTTACGCCGA
CGAGCCCGTCATGACATGCCGGAAAATCTTACGGTGGCAGCAACACTTGG
AGGTATCGGCGGAGGTACGTTCGAGGGTCAGCCCCGCGTGCTTGGACTTC
ATGCATTCACTCATTGCACCAGCAGAAAGGAGGTTGGGAAGGAACGGCCT
GGAGGAGATCAAGGCCCACCCGTGGTTTGCCACGTCAGGGCTGGAATGGG
AGGGACTGAAGGAGCTCGAGGCACCGTACCGTCCCGAGGGGTCGGAGGTA
TTGAGAGGGATGATGGAGGACCTGAAGGGCGTAGAAAGGAGAGATGCGAG
GTTTCAGCCGTTAATTGAGCAAATAACTGCGAATTTTGACGATTTTCCGG
AGGTGGAGGGAGGGGGGGGAGGAATGCGGGGGAGGGAGGGGGAGGGGGAG
GGAAGGGGGAAGGGGGGGAGTTCATAG back to top Coding sequence (CDS) from alignment at chr4:1271780..1275683+
>NO04G04670.1 ID=NO04G04670.1|Name=NO04G04670.1|organism=Nannochloropsis oceanica|type=CDS|length=1563bp|location=Sequence derived from alignment at chr4:1271780..1275683+ (Nannochloropsis oceanica) back to top