NO04G04250.1, NO04G04250.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G04250.1
Unique NameNO04G04250.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length633
Alignment locationchr4:1154487..1155119 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1154487..1155119 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G04250.1 vs.
Match: EWM28738.1 (aurora kinase a [Nannochloropsis gaditana])

HSP 1 Score: 174.9 bits (442), Expect = 2.700e-40
Identity = 79/107 (73.83%), Postives = 95/107 (88.79%), Query Frame = 0 
Query:    1 MLRHDGRGYAESVDTWSVGVLCYEFLVGRTPFRKSSPVMFQEDEDEEGEALKEQEGTMFANILEGRLNFPTYVSEAAKDFISKLLVVETERRMTLSEAMRHPWMLLY 108
            MLRHDG+GYAESVDTWSVGVLCYEFLVGRTPFR+SSPV FQE++D EGEALK  EG+MF NI++G+++FP Y+S AA+DFI KLL+V+T  RMTL EAMRHPWM ++
Sbjct:  600 MLRHDGKGYAESVDTWSVGVLCYEFLVGRTPFRRSSPVTFQEEDDVEGEALKNFEGSMFENIMDGKVSFPLYMSRAAQDFIEKLLIVDTRVRMTLQEAMRHPWMRMH 706
The following BLAST results are available for this feature:
BLAST of NO04G04250.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28738.12.700e-4073.83aurora kinase a [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G04250NO04G04250Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G04250.1NO04G04250.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G04250.1.cds1NO04G04250.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G04250.1 ID=NO04G04250.1|Name=NO04G04250.1|organism=Nannochloropsis oceanica|type=mRNA|length=633bp
ATGCTGCGGCATGACGGGAGGGGATATGCGGAGAGTGTAGACACGTGGTC
GGTGGGGGTGCTGTGCTACGAGTTTCTGGTGGGCCGGACCCCGTTTCGAA
AGTCGAGCCCAGTGATGTTCCAGGAGGACGAGGACGAGGAGGGGGAGGCC
TTGAAGGAGCAGGAGGGGACCATGTTTGCGAACATCTTGGAGGGGAGGTT
GAATTTTCCCACGTATGTCTCGGAGGCTGCGAAGGATTTTATCAGTAAGT
TGTTGGTGGTGGAGACGGAGAGAAGGATGACTTTGAGTGAGGCGATGCGC
CACCCCTGGATGCTGCTCTATGCACATCAGGCAACAGGACTGCTACAACA
GCAGCGACAGCAACAGCAACAGCGGCGGCAGCCTATTATATCACCGGTGG
AATCGTCTGGATATGGATATGGCGGAAGGGGAATATCTGCCGCTGGCTCT
GCCATGAAAAACAGGAGTGATAAAAGCGGCAGCAACAGTAGCAGCGGCAA
TGGCAGCAGTGATATAAACAAGATGGTGGGGGTGGGAAGGCGAATTAAGT
CATGTTCATATTCTTCTGCAATGCCGAGACGGCAAGCAGGGGTCATCTTG
CCTTTGTCTACCAGGCCAGCCTGGACCGAGTAA
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protein sequence of NO04G04250.1

>NO04G04250.1-protein ID=NO04G04250.1-protein|Name=NO04G04250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=211bp
MLRHDGRGYAESVDTWSVGVLCYEFLVGRTPFRKSSPVMFQEDEDEEGEA
LKEQEGTMFANILEGRLNFPTYVSEAAKDFISKLLVVETERRMTLSEAMR
HPWMLLYAHQATGLLQQQRQQQQQRRQPIISPVESSGYGYGGRGISAAGS
AMKNRSDKSGSNSSSGNGSSDINKMVGVGRRIKSCSYSSAMPRRQAGVIL
PLSTRPAWTE*
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mRNA from alignment at chr4:1154487..1155119-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G04250.1 ID=NO04G04250.1|Name=NO04G04250.1|organism=Nannochloropsis oceanica|type=mRNA|length=633bp|location=Sequence derived from alignment at chr4:1154487..1155119- (Nannochloropsis oceanica)
ATGCTGCGGCATGACGGGAGGGGATATGCGGAGAGTGTAGACACGTGGTC
GGTGGGGGTGCTGTGCTACGAGTTTCTGGTGGGCCGGACCCCGTTTCGAA
AGTCGAGCCCAGTGATGTTCCAGGAGGACGAGGACGAGGAGGGGGAGGCC
TTGAAGGAGCAGGAGGGGACCATGTTTGCGAACATCTTGGAGGGGAGGTT
GAATTTTCCCACGTATGTCTCGGAGGCTGCGAAGGATTTTATCAGTAAGT
TGTTGGTGGTGGAGACGGAGAGAAGGATGACTTTGAGTGAGGCGATGCGC
CACCCCTGGATGCTGCTCTATGCACATCAGGCAACAGGACTGCTACAACA
GCAGCGACAGCAACAGCAACAGCGGCGGCAGCCTATTATATCACCGGTGG
AATCGTCTGGATATGGATATGGCGGAAGGGGAATATCTGCCGCTGGCTCT
GCCATGAAAAACAGGAGTGATAAAAGCGGCAGCAACAGTAGCAGCGGCAA
TGGCAGCAGTGATATAAACAAGATGGTGGGGGTGGGAAGGCGAATTAAGT
CATGTTCATATTCTTCTGCAATGCCGAGACGGCAAGCAGGGGTCATCTTG
CCTTTGTCTACCAGGCCAGCCTGGACCGAGTAA
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Coding sequence (CDS) from alignment at chr4:1154487..1155119-

>NO04G04250.1 ID=NO04G04250.1|Name=NO04G04250.1|organism=Nannochloropsis oceanica|type=CDS|length=633bp|location=Sequence derived from alignment at chr4:1154487..1155119- (Nannochloropsis oceanica)
ATGCTGCGGCATGACGGGAGGGGATATGCGGAGAGTGTAGACACGTGGTC
GGTGGGGGTGCTGTGCTACGAGTTTCTGGTGGGCCGGACCCCGTTTCGAA
AGTCGAGCCCAGTGATGTTCCAGGAGGACGAGGACGAGGAGGGGGAGGCC
TTGAAGGAGCAGGAGGGGACCATGTTTGCGAACATCTTGGAGGGGAGGTT
GAATTTTCCCACGTATGTCTCGGAGGCTGCGAAGGATTTTATCAGTAAGT
TGTTGGTGGTGGAGACGGAGAGAAGGATGACTTTGAGTGAGGCGATGCGC
CACCCCTGGATGCTGCTCTATGCACATCAGGCAACAGGACTGCTACAACA
GCAGCGACAGCAACAGCAACAGCGGCGGCAGCCTATTATATCACCGGTGG
AATCGTCTGGATATGGATATGGCGGAAGGGGAATATCTGCCGCTGGCTCT
GCCATGAAAAACAGGAGTGATAAAAGCGGCAGCAACAGTAGCAGCGGCAA
TGGCAGCAGTGATATAAACAAGATGGTGGGGGTGGGAAGGCGAATTAAGT
CATGTTCATATTCTTCTGCAATGCCGAGACGGCAAGCAGGGGTCATCTTG
CCTTTGTCTACCAGGCCAGCCTGGACCGAGTAA
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Synonyms
Publications