NO04G04120.1, NO04G04120.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G04120.1
Unique NameNO04G04120.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1797
Alignment locationchr4:1120377..1122173 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1120377..1122173 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G04120.1 vs.
Match: EWM28667.1 (dual specificity protein phosphatase 12 [Nannochloropsis gaditana])

HSP 1 Score: 339.3 bits (869), Expect = 2.100e-89
Identity = 232/550 (42.18%), Postives = 303/550 (55.09%), Query Frame = 0 
Query:   10 EDNFEALDMEMLIIDVPHPPNPMPRFYVSGVSATRKPAVLVTLQLTHLVSIGAEPGKILASQFQPGRTSLSFPKILDIEEQDLLSSLLPTLLPFLAATTPEDTILVHCQAGQSRSVAAVLMYLIICQGLTLVDAHAQVARSRPGVCVNPGFLRQLLFLEDF-----------PGLRRSPFTGTKCG--ANEFISASFTDTESKATALIQSSRRRSAMRGSWAAEHRLYLLNNLFRVTCRLSSLEPVQVWETIDNEHRKLVKLLIRYGHACRKGPPVEEEGGGEEEEEEVLGEEEEARGK------GWVARCRHCHQLLCTEEDVVRHAGEEIDILKKRTRVRARGIGRAAPAAESVWGYGREFERQPVLHLLPLSHACVKTRKAEEEK---------------RKKEGKR--RNIENGEDEGKGEGGRHGKSRTTCRHRYVFPPPWVMPSLLTSERGGDGISITATDAKEGTMNVRGGIGRGGGKEGGMVDLRCPGRHCGAVVGSMQAR-PEEGRREKGG--CECLEPLPVVVVRFWEEALMNECAREER 521
            EDN   +D+ +L+ + P  P P PRFYV GVSA      L    LTHL+S+G  P   +A+ F  GRTSL  P +LD+E+QDLLS+  P+LL FL+ATT  D+ILVHCQAGQSRS+AAVLMYLI+C+G+ LVDAHAQ+AR RP VCVN GFLRQLLFLEDF           P L   P T    G   +  ++ +   T+ + T    SS   S      A+EHRLY+L    + TC+LSSL+   + E ++  HR L+  +  Y      G     +   EE EE ++   E  RGK      GWVARCRHC  +LCTEE+ VRH+    D    R   R + IGRAAP AE   GY   FER+P+LHL  + +A +K R+  + +               ++K+G+R    I +   EG        +    C++ Y +P  W + SLL    GG   S +A   K+  +   G  G  GG E GM  LRCPGRHCG +VG+ QAR  E     +GG  CEC+E LP+VVVRF    L  +   E R
Sbjct:    8 EDNL-GVDVNLLVFNPPLWP-PSPRFYVGGVSAAYASGALQLFGLTHLLSLGVTPAAHVAAHFTVGRTSLCLPDLLDVEDQDLLSAA-PSLLAFLSATTSSDSILVHCQAGQSRSIAAVLMYLIVCKGMDLVDAHAQIARCRPQVCVNAGFLRQLLFLEDFVARDIFYESLMPRLVTRPLTHNSHGHDTDGILNRTGCATQEQCT----SSGLHSC---QLASEHRLYILGKRIQTTCQLSSLDAGSLLEEVEEMHRALIDQVRLYFRGACTGK--HRDPTSEEREEGMVRSAE--RGKTGGQAVGWVARCRHCGHVLCTEEEEVRHSAP--DFKASRVFDRVKAIGRAAPEAEKFRGYLEAFERRPLLHLSTVPYAILKQRRKRDGRTDPRRAVRGDGIPDIQQKDGRRPSAEISSASREGSIRRADDREVGQGCQYMYAYPRRWSLASLL----GGGTASGSAVKPKDRGVEGGGTGGDFGGSE-GMRSLRCPGRHCGVIVGATQARVGEVAGSARGGEACECMEALPMVVVRFRRGCLRIDTVTERR 536
The following BLAST results are available for this feature:
BLAST of NO04G04120.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28667.12.100e-8942.18dual specificity protein phosphatase 12 [Nannochlo... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G04120NO04G04120Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G04120.1NO04G04120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G04120.1.cds1NO04G04120.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G04120.1 ID=NO04G04120.1|Name=NO04G04120.1|organism=Nannochloropsis oceanica|type=mRNA|length=1797bp
ACAGACACAAGTACAGAGGCTGTTACGACATTCGCAAGGATCAGGAGGGC
GCGTCGATCGCTTGCTGCGGTGCTGGTTGTGCCTCTTCACGTCTCCAAAA
ACACGACGAGAGCGAACCTCCCACCCCCATTGCTCCTCCTTCAAAACCCC
TTCCACCATAACGCATTAACCAGTTGCACAATTATGGAGACCACTGCCAC
TGCACCTGTCGAAGACAATTTTGAAGCCCTGGACATGGAAATGCTCATTA
TAGACGTTCCCCACCCTCCAAATCCAATGCCTCGCTTCTACGTTAGCGGC
GTCTCGGCAACACGCAAGCCCGCAGTCCTGGTGACGCTCCAGCTAACCCA
CCTTGTCTCCATTGGAGCTGAACCCGGAAAGATTCTGGCTTCACAGTTTC
AGCCGGGCCGTACCTCCCTCTCTTTCCCAAAAATCTTGGACATCGAAGAA
CAAGACCTCCTCTCCTCCCTACTTCCCACTCTCCTTCCCTTCCTCGCCGC
GACCACGCCAGAGGACACCATCCTAGTGCATTGCCAAGCCGGCCAATCAC
GTTCTGTTGCTGCAGTGTTGATGTACTTGATAATATGTCAAGGCCTGACC
TTGGTGGATGCCCACGCCCAGGTAGCTCGGTCTCGGCCAGGGGTTTGTGT
AAATCCGGGCTTCCTCCGTCAGCTTTTGTTTTTGGAAGACTTTCCCGGCT
TGCGTCGCTCTCCTTTCACAGGAACCAAATGTGGCGCCAATGAATTTATC
TCCGCTTCTTTTACTGACACGGAGAGCAAAGCAACCGCACTCATTCAGAG
TAGCCGCAGAAGAAGTGCAATGCGCGGTTCATGGGCCGCCGAGCACCGCC
TTTACCTCTTGAATAATCTCTTTCGAGTCACATGTCGTCTTTCCTCTTTG
GAGCCAGTACAGGTCTGGGAAACAATCGACAATGAACACAGAAAGCTGGT
AAAGTTGTTGATCAGGTATGGGCATGCTTGTCGCAAGGGTCCGCCGGTGG
AAGAGGAAGGGGGGGGGGAGGAGGAAGAGGAGGAAGTGTTGGGAGAGGAA
GAAGAGGCAAGGGGAAAAGGGTGGGTCGCGCGCTGTCGACATTGCCATCA
GCTACTATGTACAGAAGAAGATGTAGTGAGGCATGCGGGGGAGGAAATTG
ATATTTTGAAGAAGAGGACGAGGGTGAGAGCGCGAGGCATAGGCAGAGCA
GCACCAGCAGCTGAGAGTGTGTGGGGGTACGGGAGGGAGTTCGAGCGGCA
GCCGGTGCTGCATTTGTTGCCCCTATCGCATGCTTGTGTGAAGACTAGGA
AAGCAGAGGAGGAGAAGAGAAAGAAGGAGGGGAAAAGGAGGAATATTGAA
AATGGAGAGGATGAGGGAAAAGGGGAGGGCGGCAGACATGGAAAAAGCAG
GACGACTTGTCGTCATCGTTATGTGTTCCCCCCACCATGGGTCATGCCGT
CCTTGCTTACATCAGAAAGGGGAGGAGATGGCATCAGTATCACAGCCACT
GACGCCAAGGAAGGGACGATGAATGTGAGAGGAGGAATAGGGAGGGGGGG
AGGGAAGGAAGGAGGGATGGTCGATCTCAGGTGCCCGGGTCGGCATTGTG
GCGCTGTGGTGGGGTCAATGCAGGCACGACCGGAGGAAGGAAGGAGGGAG
AAAGGAGGATGCGAGTGCTTAGAGCCGTTGCCAGTGGTAGTGGTGAGATT
TTGGGAGGAGGCATTGATGAATGAATGCGCGAGAGAGGAGCGAGGGAGAG
AGGGATGGAAGGAAAGAGAAGATCACGGGGGTCTGTGTGTGAAATAA
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protein sequence of NO04G04120.1

>NO04G04120.1-protein ID=NO04G04120.1-protein|Name=NO04G04120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=538bp
METTATAPVEDNFEALDMEMLIIDVPHPPNPMPRFYVSGVSATRKPAVLV
TLQLTHLVSIGAEPGKILASQFQPGRTSLSFPKILDIEEQDLLSSLLPTL
LPFLAATTPEDTILVHCQAGQSRSVAAVLMYLIICQGLTLVDAHAQVARS
RPGVCVNPGFLRQLLFLEDFPGLRRSPFTGTKCGANEFISASFTDTESKA
TALIQSSRRRSAMRGSWAAEHRLYLLNNLFRVTCRLSSLEPVQVWETIDN
EHRKLVKLLIRYGHACRKGPPVEEEGGGEEEEEEVLGEEEEARGKGWVAR
CRHCHQLLCTEEDVVRHAGEEIDILKKRTRVRARGIGRAAPAAESVWGYG
REFERQPVLHLLPLSHACVKTRKAEEEKRKKEGKRRNIENGEDEGKGEGG
RHGKSRTTCRHRYVFPPPWVMPSLLTSERGGDGISITATDAKEGTMNVRG
GIGRGGGKEGGMVDLRCPGRHCGAVVGSMQARPEEGRREKGGCECLEPLP
VVVVRFWEEALMNECAREERGREGWKEREDHGGLCVK*
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mRNA from alignment at chr4:1120377..1122173-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G04120.1 ID=NO04G04120.1|Name=NO04G04120.1|organism=Nannochloropsis oceanica|type=mRNA|length=1797bp|location=Sequence derived from alignment at chr4:1120377..1122173- (Nannochloropsis oceanica)
ACAGACACAAGTACAGAGGCTGTTACGACATTCGCAAGGATCAGGAGGGC
GCGTCGATCGCTTGCTGCGGTGCTGGTTGTGCCTCTTCACGTCTCCAAAA
ACACGACGAGAGCGAACCTCCCACCCCCATTGCTCCTCCTTCAAAACCCC
TTCCACCATAACGCATTAACCAGTTGCACAATTATGGAGACCACTGCCAC
TGCACCTGTCGAAGACAATTTTGAAGCCCTGGACATGGAAATGCTCATTA
TAGACGTTCCCCACCCTCCAAATCCAATGCCTCGCTTCTACGTTAGCGGC
GTCTCGGCAACACGCAAGCCCGCAGTCCTGGTGACGCTCCAGCTAACCCA
CCTTGTCTCCATTGGAGCTGAACCCGGAAAGATTCTGGCTTCACAGTTTC
AGCCGGGCCGTACCTCCCTCTCTTTCCCAAAAATCTTGGACATCGAAGAA
CAAGACCTCCTCTCCTCCCTACTTCCCACTCTCCTTCCCTTCCTCGCCGC
GACCACGCCAGAGGACACCATCCTAGTGCATTGCCAAGCCGGCCAATCAC
GTTCTGTTGCTGCAGTGTTGATGTACTTGATAATATGTCAAGGCCTGACC
TTGGTGGATGCCCACGCCCAGGTAGCTCGGTCTCGGCCAGGGGTTTGTGT
AAATCCGGGCTTCCTCCGTCAGCTTTTGTTTTTGGAAGACTTTCCCGGCT
TGCGTCGCTCTCCTTTCACAGGAACCAAATGTGGCGCCAATGAATTTATC
TCCGCTTCTTTTACTGACACGGAGAGCAAAGCAACCGCACTCATTCAGAG
TAGCCGCAGAAGAAGTGCAATGCGCGGTTCATGGGCCGCCGAGCACCGCC
TTTACCTCTTGAATAATCTCTTTCGAGTCACATGTCGTCTTTCCTCTTTG
GAGCCAGTACAGGTCTGGGAAACAATCGACAATGAACACAGAAAGCTGGT
AAAGTTGTTGATCAGGTATGGGCATGCTTGTCGCAAGGGTCCGCCGGTGG
AAGAGGAAGGGGGGGGGGAGGAGGAAGAGGAGGAAGTGTTGGGAGAGGAA
GAAGAGGCAAGGGGAAAAGGGTGGGTCGCGCGCTGTCGACATTGCCATCA
GCTACTATGTACAGAAGAAGATGTAGTGAGGCATGCGGGGGAGGAAATTG
ATATTTTGAAGAAGAGGACGAGGGTGAGAGCGCGAGGCATAGGCAGAGCA
GCACCAGCAGCTGAGAGTGTGTGGGGGTACGGGAGGGAGTTCGAGCGGCA
GCCGGTGCTGCATTTGTTGCCCCTATCGCATGCTTGTGTGAAGACTAGGA
AAGCAGAGGAGGAGAAGAGAAAGAAGGAGGGGAAAAGGAGGAATATTGAA
AATGGAGAGGATGAGGGAAAAGGGGAGGGCGGCAGACATGGAAAAAGCAG
GACGACTTGTCGTCATCGTTATGTGTTCCCCCCACCATGGGTCATGCCGT
CCTTGCTTACATCAGAAAGGGGAGGAGATGGCATCAGTATCACAGCCACT
GACGCCAAGGAAGGGACGATGAATGTGAGAGGAGGAATAGGGAGGGGGGG
AGGGAAGGAAGGAGGGATGGTCGATCTCAGGTGCCCGGGTCGGCATTGTG
GCGCTGTGGTGGGGTCAATGCAGGCACGACCGGAGGAAGGAAGGAGGGAG
AAAGGAGGATGCGAGTGCTTAGAGCCGTTGCCAGTGGTAGTGGTGAGATT
TTGGGAGGAGGCATTGATGAATGAATGCGCGAGAGAGGAGCGAGGGAGAG
AGGGATGGAAGGAAAGAGAAGATCACGGGGGTCTGTGTGTGAAATAA
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Coding sequence (CDS) from alignment at chr4:1120377..1122173-

>NO04G04120.1 ID=NO04G04120.1|Name=NO04G04120.1|organism=Nannochloropsis oceanica|type=CDS|length=1614bp|location=Sequence derived from alignment at chr4:1120377..1122173- (Nannochloropsis oceanica)
ATGGAGACCACTGCCACTGCACCTGTCGAAGACAATTTTGAAGCCCTGGA
CATGGAAATGCTCATTATAGACGTTCCCCACCCTCCAAATCCAATGCCTC
GCTTCTACGTTAGCGGCGTCTCGGCAACACGCAAGCCCGCAGTCCTGGTG
ACGCTCCAGCTAACCCACCTTGTCTCCATTGGAGCTGAACCCGGAAAGAT
TCTGGCTTCACAGTTTCAGCCGGGCCGTACCTCCCTCTCTTTCCCAAAAA
TCTTGGACATCGAAGAACAAGACCTCCTCTCCTCCCTACTTCCCACTCTC
CTTCCCTTCCTCGCCGCGACCACGCCAGAGGACACCATCCTAGTGCATTG
CCAAGCCGGCCAATCACGTTCTGTTGCTGCAGTGTTGATGTACTTGATAA
TATGTCAAGGCCTGACCTTGGTGGATGCCCACGCCCAGGTAGCTCGGTCT
CGGCCAGGGGTTTGTGTAAATCCGGGCTTCCTCCGTCAGCTTTTGTTTTT
GGAAGACTTTCCCGGCTTGCGTCGCTCTCCTTTCACAGGAACCAAATGTG
GCGCCAATGAATTTATCTCCGCTTCTTTTACTGACACGGAGAGCAAAGCA
ACCGCACTCATTCAGAGTAGCCGCAGAAGAAGTGCAATGCGCGGTTCATG
GGCCGCCGAGCACCGCCTTTACCTCTTGAATAATCTCTTTCGAGTCACAT
GTCGTCTTTCCTCTTTGGAGCCAGTACAGGTCTGGGAAACAATCGACAAT
GAACACAGAAAGCTGGTAAAGTTGTTGATCAGGTATGGGCATGCTTGTCG
CAAGGGTCCGCCGGTGGAAGAGGAAGGGGGGGGGGAGGAGGAAGAGGAGG
AAGTGTTGGGAGAGGAAGAAGAGGCAAGGGGAAAAGGGTGGGTCGCGCGC
TGTCGACATTGCCATCAGCTACTATGTACAGAAGAAGATGTAGTGAGGCA
TGCGGGGGAGGAAATTGATATTTTGAAGAAGAGGACGAGGGTGAGAGCGC
GAGGCATAGGCAGAGCAGCACCAGCAGCTGAGAGTGTGTGGGGGTACGGG
AGGGAGTTCGAGCGGCAGCCGGTGCTGCATTTGTTGCCCCTATCGCATGC
TTGTGTGAAGACTAGGAAAGCAGAGGAGGAGAAGAGAAAGAAGGAGGGGA
AAAGGAGGAATATTGAAAATGGAGAGGATGAGGGAAAAGGGGAGGGCGGC
AGACATGGAAAAAGCAGGACGACTTGTCGTCATCGTTATGTGTTCCCCCC
ACCATGGGTCATGCCGTCCTTGCTTACATCAGAAAGGGGAGGAGATGGCA
TCAGTATCACAGCCACTGACGCCAAGGAAGGGACGATGAATGTGAGAGGA
GGAATAGGGAGGGGGGGAGGGAAGGAAGGAGGGATGGTCGATCTCAGGTG
CCCGGGTCGGCATTGTGGCGCTGTGGTGGGGTCAATGCAGGCACGACCGG
AGGAAGGAAGGAGGGAGAAAGGAGGATGCGAGTGCTTAGAGCCGTTGCCA
GTGGTAGTGGTGAGATTTTGGGAGGAGGCATTGATGAATGAATGCGCGAG
AGAGGAGCGAGGGAGAGAGGGATGGAAGGAAAGAGAAGATCACGGGGGTC
TGTGTGTGAAATAA
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Synonyms
Publications