NO04G03720.2, NO04G03720.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G03720.2
Unique NameNO04G03720.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1751
Alignment locationchr4:1007357..1009221 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1007357..1009221 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G03720.2 vs.
Match: EWM28673.1 (cystathionine gamma-lyase [Nannochloropsis gaditana])

HSP 1 Score: 689.9 bits (1779), Expect = 4.900e-195
Identity = 343/412 (83.25%), Postives = 383/412 (92.96%), Query Frame = 0 
Query:    1 MSNGDGKKQVLTDPFRGFGTIAIHAGQEPDPGTGAVVPAISLATTFAQASPGTKYGTDLPNSFGKGFEYSRTGNPTRGAFERAMAAVEHGKHALAFASGLAATSAVVHLLETGQHVVIVDDVYGGTQRYFRKIAKPTYNIDFSFVDFNDTTALEAAFRPNQTKLIWLETPTNPTLKLSDIAATAAIAKKHGALFVVDNTFLSPYFQNPLDLGADMVVHSVTKYIGGHSDVVGGVIITNSPDLNEKLRFIQNSVGAVPSPFDCFMALRGLKTLHVRLEAAARNALAIATYLGQHSGVTKVLFPGLPSHPQFELAKKQQHGPGAMVTFYVGGEVSNARRFLESLQVFILAESLGAVESLAESPAIMTHASVPPEVRKALGIDDTLVRLSVGIESLPDLIEDLDQALKKAAAVTA 413
            MS+G  KK+  +D  RGFGTIAIHAGQEPDPGTGAVVPAISLATTF+Q SPG K+GTDLPNSFGKGFEYSRTGNPTRGAFERAMAAVEHG+ A++FASGLAATSA+VHLLETGQHVVIVDDVYGGTQRYFR + KPTY+IDF+FVDFND +AL+AAF+P +T+L+WLETPTNPTLK+SD+AATAA+AKKHGALFV DNTFLSPYFQNPLDLGADMVVHSVTKYIGGHSDVVGGV++TN P+++EKLRFIQNSVGAVPSPFD +MALRGLKTLHVR+EAAARNALAIA +L QH+GV +VL+PGLPSHPQ+ LA+KQQHG GAM+TFYV G + NARRFLE+LQVFILAESLGAVESLAESPAIMTHASVP EVR+ LGIDDTLVRLSVGIESLPDLIEDLD+AL+ A A TA
Sbjct:   17 MSHGK-KKEAYSD--RGFGTIAIHAGQEPDPGTGAVVPAISLATTFSQVSPGVKHGTDLPNSFGKGFEYSRTGNPTRGAFERAMAAVEHGQFAVSFASGLAATSAIVHLLETGQHVVIVDDVYGGTQRYFRMVVKPTYDIDFTFVDFNDPSALDAAFQPGRTRLVWLETPTNPTLKVSDVAATAALAKKHGALFVADNTFLSPYFQNPLDLGADMVVHSVTKYIGGHSDVVGGVVVTNLPEVHEKLRFIQNSVGAVPSPFDAYMALRGLKTLHVRMEAAARNALAIARHLEQHAGVARVLYPGLPSHPQYALAQKQQHGSGAMITFYVRGALHNARRFLETLQVFILAESLGAVESLAESPAIMTHASVPAEVRRTLGIDDTLVRLSVGIESLPDLIEDLDRALEAAGAATA 425
The following BLAST results are available for this feature:
BLAST of NO04G03720.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
2004006008001000120014001600Expect = 4.90e-195 / Id = 83.25SequenceEWM28673.1
Match NameE-valueIdentityDescription
EWM28673.14.900e-19583.25cystathionine gamma-lyase [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G03720NO04G03720Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G03720.2NO04G03720.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G03720.2.cds1NO04G03720.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G03720.2.cds2NO04G03720.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G03720.2 ID=NO04G03720.2|Name=NO04G03720.2|organism=Nannochloropsis oceanica|type=mRNA|length=1751bp
CGGATAACTGCTATAGCTGCAATATCTCCAAGAGACACTGTTTCAAGGGG
GGGCTCCACGATAAAGGACAATTGGAGTGACTTTTCCCGCCTTCCTCCAT
CCATGTCGCTGTTGCACGAGACGCTGAGGATTTAAGATTCAGTGTCTCGA
TTTTCAGGATCACTATGAGAACAAAATTTCATAGGGGGAGGAGTAAATTG
TGGGAAACTACAGGAAAAAGAATTGACATGTTCGGAACAAGACACTCAAC
ACAACGCATCATACTTCCCTCAAGATCCCTCCGCAGGTAGCTACGCGGGT
TCCCACCCTTTGGTTTAAGTGAGCAGTACCAGCCAGCACGCTCTTTCTAC
AAATACTCCCTCCCATCTCTCCCCTCCTTCCGTAGAACAACACACCAGAC
ATGAGCAACGGGGACGGAAAGAAGCAGGTTTTAACGGATCCCTTCCGTGG
GTTTGGGACCATTGCCATCCACGCCGGGCAGGAGCCGGATCCTGGGACGG
GTGCAGTGGTCCCCGCTATTTCGCTCGCTACAACGTTTGCTCAAGCAAGC
CCAGGGACCAAGTACGGAACGGACCTGCCCAATAGCTTTGGGAAAGGCTT
CGAGTACAGCAGGACGGGAAACCCAACCCGAGGCGCATTTGAGCGGGCTA
TGGCCGCGGTGGAGCATGGTAAACACGCCTTGGCATTCGCCTCGGGTTTG
GCTGCGACTTCAGCCGTCGTTCATCTGCTCGAGACGGGGCAGCATGTAGT
AATTGTGGACGACGTCTATGGAGGGACACAACGTTACTTCCGTAAGATTG
CCAAGCCCACCTATAACATCGACTTCAGCTTTGTGGATTTCAACGATACC
ACCGCCCTGGAAGCAGCTTTTCGACCAAATCAGACCAAACTAATTTGGCT
CGAGACTCCTACCAATCCCACCCTCAAACTGTCCGATATTGCCGCCACTG
CCGCCATCGCCAAGAAGCACGGCGCCCTCTTCGTGGTGGACAACACCTTT
CTCTCACCCTACTTCCAGAACCCCCTCGACCTCGGCGCGGACATGGTCGT
GCACAGCGTCACTAAGTACATTGGCGGCCACTCCGATGTCGTTGGTGGAG
TCATTATCACCAACTCACCCGACTTGAACGAGAAACTGCGGTTTATACAA
AACTCAGTCGGGGCCGTGCCCTCCCCCTTCGATTGCTTCATGGCCCTCCG
CGGCCTCAAGACACTCCACGTCCGCCTCGAAGCTGCTGCACGCAATGCCC
TTGCGATTGCCACTTATTTGGGGCAACATTCTGGAGTGACCAAGGTTTTG
TTTCCTGGCCTTCCATCCCACCCTCAGTTTGAACTGGCGAAGAAGCAACA
GCATGGGCCCGGGGCGATGGTTACATTTTATGTTGGGGGGGAGGTGAGCA
ACGCCCGAAGATTCTTGGAGTCATTGCAGGTCTTTATACTGGCGGAGAGC
CTGGGAGCGGTTGAATCCTTGGCGGAGTCCCCGGCAATCATGACGCATGC
CTCAGTCCCACCTGAAGTGAGGAAGGCGTTGGGCATTGATGATACGTTGG
TGAGGCTATCGGTGGGGATTGAGAGCTTGCCTGATTTAATTGAAGACCTG
GACCAGGCCTTGAAAAAGGCCGCGGCAGTGACGGCCTAGGAAGGAAAGGG
GGGTTGGGGGGGTGGATGGGAGGGGTGGTTGAAGTGCGTCGAAGCGCGTG
GAGATGGGGAGGAAAAAGAGAAAGGAGGCGTCGAAGAGAGAGGGGGGGGG
G
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protein sequence of NO04G03720.2

>NO04G03720.2-protein ID=NO04G03720.2-protein|Name=NO04G03720.2|organism=Nannochloropsis oceanica|type=polypeptide|length=413bp
MSNGDGKKQVLTDPFRGFGTIAIHAGQEPDPGTGAVVPAISLATTFAQAS
PGTKYGTDLPNSFGKGFEYSRTGNPTRGAFERAMAAVEHGKHALAFASGL
AATSAVVHLLETGQHVVIVDDVYGGTQRYFRKIAKPTYNIDFSFVDFNDT
TALEAAFRPNQTKLIWLETPTNPTLKLSDIAATAAIAKKHGALFVVDNTF
LSPYFQNPLDLGADMVVHSVTKYIGGHSDVVGGVIITNSPDLNEKLRFIQ
NSVGAVPSPFDCFMALRGLKTLHVRLEAAARNALAIATYLGQHSGVTKVL
FPGLPSHPQFELAKKQQHGPGAMVTFYVGGEVSNARRFLESLQVFILAES
LGAVESLAESPAIMTHASVPPEVRKALGIDDTLVRLSVGIESLPDLIEDL
DQALKKAAAVTA*
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mRNA from alignment at chr4:1007357..1009221+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G03720.2 ID=NO04G03720.2|Name=NO04G03720.2|organism=Nannochloropsis oceanica|type=mRNA|length=1865bp|location=Sequence derived from alignment at chr4:1007357..1009221+ (Nannochloropsis oceanica)
CGGATAACTGCTATAGCTGCAATATCTCCAAGAGACACTGTTTCAAGGGG
GGGCTCCACGATAAAGGACAATTGGAGTGACTTTTCCCGCCTTCCTCCAT
CCATGTCGCTGTTGCACGAGACGCTGAGGATTTAAGATTCAGTGTCTCGA
TTTTCAGGATCACTATGAGAACAAAATTTCATAGGGGGAGGAGTAAATTG
TGGGAAACTACAGGAAAAAGAATTGACATGTTCGGAACAAGACACTCAAC
ACAACGCATCATACTTCCCTCAAGATCCCTCCGCAGGTAGCTACGCGGGT
TCCCACCCTTTGGTTTAAGTGAGCAGTACCAGCCAGCACGCTCTTTCTAC
AAATACTCCCTCCCATCTCTCCCCTCCTTCCGTAGAACAACACACCAGAC
ATGAGCAACGGGGACGGAAAGAAGCAGGTTTTAACGGATCCCTTCCGTGG
GTTTGGGACCATTGCCATCCACGCCGGGCAGGAGCCGGATCCTGGGACGG
GTGCAGTGGTCCCCGCTATTTCGCTCGCTACAACGTTTGCTCAAGCAAGC
CCAGGGACCAAGTACGGAACGGACCTGCCCAATAGCTTTGGGAAAGGCTT
CGAGTACAGCAGGACGGGAAACCCAACCCGAGGCGCATTTGAGCGGGCTA
TGGCCGCGGTGGAGCATGGTAAACACGCCTTGGCATTCGCCTCGGGTTTG
GCTGCGACTTCAGCCGTCGTTCATCTGCTCGAGACGGGGCAGCATGTAGT
AATTGTGGACGACGTCTATGGAGGGACACAAGTAAGATGATTCGTATTCA
TTCATGTGGGTCACATATTATCTCTAACGTCAATCTGTTTTCAAACTGCA
AGCTCGTCTAACCCATGCACCCACATACCCCGACTCTTGCAAAAGCGTTA
CTTCCGTAAGATTGCCAAGCCCACCTATAACATCGACTTCAGCTTTGTGG
ATTTCAACGATACCACCGCCCTGGAAGCAGCTTTTCGACCAAATCAGACC
AAACTAATTTGGCTCGAGACTCCTACCAATCCCACCCTCAAACTGTCCGA
TATTGCCGCCACTGCCGCCATCGCCAAGAAGCACGGCGCCCTCTTCGTGG
TGGACAACACCTTTCTCTCACCCTACTTCCAGAACCCCCTCGACCTCGGC
GCGGACATGGTCGTGCACAGCGTCACTAAGTACATTGGCGGCCACTCCGA
TGTCGTTGGTGGAGTCATTATCACCAACTCACCCGACTTGAACGAGAAAC
TGCGGTTTATACAAAACTCAGTCGGGGCCGTGCCCTCCCCCTTCGATTGC
TTCATGGCCCTCCGCGGCCTCAAGACACTCCACGTCCGCCTCGAAGCTGC
TGCACGCAATGCCCTTGCGATTGCCACTTATTTGGGGCAACATTCTGGAG
TGACCAAGGTTTTGTTTCCTGGCCTTCCATCCCACCCTCAGTTTGAACTG
GCGAAGAAGCAACAGCATGGGCCCGGGGCGATGGTTACATTTTATGTTGG
GGGGGAGGTGAGCAACGCCCGAAGATTCTTGGAGTCATTGCAGGTCTTTA
TACTGGCGGAGAGCCTGGGAGCGGTTGAATCCTTGGCGGAGTCCCCGGCA
ATCATGACGCATGCCTCAGTCCCACCTGAAGTGAGGAAGGCGTTGGGCAT
TGATGATACGTTGGTGAGGCTATCGGTGGGGATTGAGAGCTTGCCTGATT
TAATTGAAGACCTGGACCAGGCCTTGAAAAAGGCCGCGGCAGTGACGGCC
TAGGAAGGAAAGGGGGGTTGGGGGGGTGGATGGGAGGGGTGGTTGAAGTG
CGTCGAAGCGCGTGGAGATGGGGAGGAAAAAGAGAAAGGAGGCGTCGAAG
AGAGAGGGGGGGGGG
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Coding sequence (CDS) from alignment at chr4:1007357..1009221+

>NO04G03720.2 ID=NO04G03720.2|Name=NO04G03720.2|organism=Nannochloropsis oceanica|type=CDS|length=1239bp|location=Sequence derived from alignment at chr4:1007357..1009221+ (Nannochloropsis oceanica)
ATGAGCAACGGGGACGGAAAGAAGCAGGTTTTAACGGATCCCTTCCGTGG
GTTTGGGACCATTGCCATCCACGCCGGGCAGGAGCCGGATCCTGGGACGG
GTGCAGTGGTCCCCGCTATTTCGCTCGCTACAACGTTTGCTCAAGCAAGC
CCAGGGACCAAGTACGGAACGGACCTGCCCAATAGCTTTGGGAAAGGCTT
CGAGTACAGCAGGACGGGAAACCCAACCCGAGGCGCATTTGAGCGGGCTA
TGGCCGCGGTGGAGCATGGTAAACACGCCTTGGCATTCGCCTCGGGTTTG
GCTGCGACTTCAGCCGTCGTTCATCTGCTCGAGACGGGGCAGCATGTAGT
AATTGTGGACGACGTCTATGGAGGGACACAACGTTACTTCCGTAAGATTG
CCAAGCCCACCTATAACATCGACTTCAGCTTTGTGGATTTCAACGATACC
ACCGCCCTGGAAGCAGCTTTTCGACCAAATCAGACCAAACTAATTTGGCT
CGAGACTCCTACCAATCCCACCCTCAAACTGTCCGATATTGCCGCCACTG
CCGCCATCGCCAAGAAGCACGGCGCCCTCTTCGTGGTGGACAACACCTTT
CTCTCACCCTACTTCCAGAACCCCCTCGACCTCGGCGCGGACATGGTCGT
GCACAGCGTCACTAAGTACATTGGCGGCCACTCCGATGTCGTTGGTGGAG
TCATTATCACCAACTCACCCGACTTGAACGAGAAACTGCGGTTTATACAA
AACTCAGTCGGGGCCGTGCCCTCCCCCTTCGATTGCTTCATGGCCCTCCG
CGGCCTCAAGACACTCCACGTCCGCCTCGAAGCTGCTGCACGCAATGCCC
TTGCGATTGCCACTTATTTGGGGCAACATTCTGGAGTGACCAAGGTTTTG
TTTCCTGGCCTTCCATCCCACCCTCAGTTTGAACTGGCGAAGAAGCAACA
GCATGGGCCCGGGGCGATGGTTACATTTTATGTTGGGGGGGAGGTGAGCA
ACGCCCGAAGATTCTTGGAGTCATTGCAGGTCTTTATACTGGCGGAGAGC
CTGGGAGCGGTTGAATCCTTGGCGGAGTCCCCGGCAATCATGACGCATGC
CTCAGTCCCACCTGAAGTGAGGAAGGCGTTGGGCATTGATGATACGTTGG
TGAGGCTATCGGTGGGGATTGAGAGCTTGCCTGATTTAATTGAAGACCTG
GACCAGGCCTTGAAAAAGGCCGCGGCAGTGACGGCCTAG
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Synonyms
Publications