NO04G03690.1, NO04G03690.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO04G03690.1
Unique Name	NO04G03690.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2998
Alignment location	chr4:1001134..1004305 -

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr4	genome	chr4:1001134..1004305 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO04G03690.1 vs.
Match: EWM28800.1 (heat shock protein hsp20 [Nannochloropsis gaditana])

HSP 1 Score: 231.5 bits (589), Expect = 1.700e-57
Identity = 116/150 (77.33%), Postives = 132/150 (88.00%), Query Frame = 0

Query:    1 MFGHPGHMLAFDQGGMNADMAHHLMLNPHHPH-HHSHMLMDISETDREYRIEVDLPGNKKDDIDISVDDDVLTIQTERREESSEDQLNYHVKERRVGKSKRSIRLPKSADTDSIRAQYMDGVLRICVDKKTEKSQSKSVIITDHSYPFAK 150
            MFGHPGH+L FDQGGMN+DMA HL+   HHP+ HH  M MDISETDRE+RI+VDLPG+KK+DIDISVDDD+LT+QTERREE SED  N+HVKERRVGK+KRSIRLP+SADTDS+RAQY DGVLRICV+KK EK QSKS+ ITD SYPF K
Sbjct:    1 MFGHPGHLLTFDQGGMNSDMARHLV---HHPYAHHPSMQMDISETDREFRIQVDLPGHKKEDIDISVDDDILTVQTERREEHSEDTENFHVKERRVGKAKRSIRLPRSADTDSVRAQYADGVLRICVEKKAEKGQSKSIKITDQSYPFTK 147

The following BLAST results are available for this feature:

BLAST of NO04G03690.1 vs.

BLAST of NO04G03690.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM28800.1	1.700e-57	77.33	heat shock protein hsp20 [Nannochloropsis gaditana...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO04G03690	NO04G03690	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO04G03690.1	NO04G03690.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO04G03690.1.cds1	NO04G03690.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO04G03690.1.cds2	NO04G03690.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr4:1001134..1004305-
coding sequence from alignment at chr4:1001134..1004305-

mRNA sequence

>NO04G03690.1 ID=NO04G03690.1|Name=NO04G03690.1|organism=Nannochloropsis oceanica|type=mRNA|length=2998bp
CCTTCCCACCCTCCCTCCCTGTGCTCACGCAGTCGACGCCTCCTTTATCT
CGAGCACCATCTTGGCATACGTTTCTTTCTCCTCCTTTCCTGCATCTTTA
TTGCTCACCAACACACAACTTGTTGGTCGCTTCACTGCCGCTGCACTGCC
CAGGTCATGCTTGGACGGTACGTAAATATAGGGGGTGTCTTTCTCCTCAC
ACAAGACTGCCAGGTGGCTTATGACGTCGACCGGGTAGATGTCCCCCGCG
ATGAGACAGATGCCTTTCTCGCCCTTCTTGAGTCCTTTTACCACTTCCTT
GACGCCGCGTTTAACGTTCTTGGCGGACGAGGCTTTTTTTACGAGCTTGT
AAAGTTTCTTGGTCAATTTCTTACCGGCCAGAGGCTTGGAGATGATACTG
ACAGCTTTTAACCGGTCTTCGTAGGATTTGGCGCTGTTGGTTAGGTGGAG
GGATGAGGGATGGATGGTGGCGTATGTGAGAGATGGTGAGCGCGGGAAGG
GAGAGTTAGGAGGGGAAACGTTATCAGCACTATGTCTTCGTGGGTCATGG
CTCTGCTTTGTTTTGGGGAGTGGATAGGGGAAGAAAGGTAAGCGGAGTGG
GATTCACAGAGTTCGCGTGCCAATGATATTGGCCTTGAATAGGTCACCAT
TTATTCATGCAAAGACATGATTGCATTCCAAGAAGGGCGATTGTGTGAAT
GAAATGAGTCAAGGGCGTTGCTGATAGGAGAGGTTGTACTTTGAGACGAC
GACTGGGCGACATTTTGTCGAAAGCATGCTTGTGCTCAAGTGATTTATCC
TGATCTCTGAGGAACGCAAAGCCTTGTCATTATAGTGGCTCTGAATTTTG
GGGAAAACGTGGCACACGGCGGCCGAGTTAAGAGGCCGAGGCAGGGAGTA
CCAAGTGCGGGTTGGTGTGAGCACAGGCCAAACTCTGCTCACAGCCTATA
ATTCTTGCTGCGCCGCGCCAGACTCTCAAACAGGGTATGCTAAAGGCGAG
GCGAACAAGAGCCCACAACGACAGGGCATAGAGAAGGTGGATGCATTGCG
AGAAGGCAGGGTATACTTGGATGGGTGGGGAGGCTGTGCAAGAACAAACG
TACCCTTTCTTCGTGCCCTCGTCGTCGCTCATGTTCCCGGTGCGACTGCA
GACTCTTCTGCTGCTCTTGAGCTGTAAGATTGTGGTGAAAGGGTGACATG
GCAAGTAAGTGGCAAAAGAAAAAAAATAGCTGGGGTCCATTGATTGATAT
CCGAGATGTGCCGAGTTTTTCTCCCGTCGGCATGCGTCGTGTGATGGATG
GTATACCTCAAGGTAAACCTTGTCCGGAGAGTCTCTTTACTGAACAAGGT
TTACAAAAAGCGGTCAATGATTGCTTGAGTCAATTTTCAGATTCATTTGT
AGCTAAAATGCTGCCCCCCCCCCCACCCAGCATAAAAGTGACTTCGTGTG
AGGTAACAGAACATACAGATGCCCATATGGAAGGTGAGGGAACTTACTTT
ACTTTTCGGGAACTTCTAGACGCCGCAAGCATCGGCACAAAATTTACTGA
ATCCCATACACACACCAGTAAATCGAAATCCTGTAACCCCCATTGATGCT
TGGCGCCGGCCTGTTGCAGGCTTCGTGCGTGCTGCACGAAATTGCCATCC
TTCCTCATCGCACTTCCCACATCTCCATCTGCTTTGCAGCCTGATGTGCT
TCTCTCTCTTGCGCAAGAGGCGCACCACAGCAAAGGCAGAGTGCATAGCT
TGGCCACAACATCGCAGTGGCCCACCAGTGTCCCTTTCGAGTATTGCAGG
GGAGAGATTTGCCGTGCCGTGGCTATCACATGGGACGAAACAAATTGGAC
AGAACATTTGAGGTCCGCTTCCCAGCTGGCGAATCGCATTATCCTGCAAG
CACCTGGCCCTATTGCGGAAAGGCGCATCAAGAGCCTCTCTCGCACCATT
AAATGCATCACTGATGTACTTGGCTATTATCCGTGGATTTGCTTACCCTT
TCCACCTTATCACCATCTCTACCCACCAAACAGAAAACATTACATAAATG
TTTGGGCATCCTGGCCATATGCTCGCGTTCGACCAAGGTGGGATGAATGC
TGACATGGCCCATCATCTGATGCTTAATCCCCACCATCCGCACCACCACT
CGCACATGTTGATGGATATCAGTGAGACCGACCGTGAGTACCGCATCGAG
GTTGACCTCCCCGGGAACAAGAAAGACGACATCGATATCAGCGTGGACGA
CGACGTGCTGACCATTCAAACAGAGCGTCGGGAGGAGTCCAGCGAGGACC
AACTTAACTATCATGTGAAAGAACGACGGGTGGGCAAGAGTAAACGCTCC
ATTCGTCTGCCCAAGAGCGCTGATACTGATTCGATTCGAGCGCAGTACAT
GGATGGGGTATTGCGAATCTGTGTGGACAAGAAGACGGAGAAGTCCCAGA
GCAAAAGCGTTATAATTACTGACCATTCTTATCCTTTTGCGAAATGAGAA
GGCCGCCCACCCCCGGAGGGGGCGGAGGTGAGGAGCCGGAGATGGAGGAA
GAAGGGTAGGACAAGTCGGCTACATCGGGAAAGCGGAAGAGAGAGCGGAG
TAAAGCGAGGTGGGGGTTAAGAAGACGTTGAGGTTTGAGACAGATGAAGA
AAATGTGGTAGATAGAGAGCAAAGACGTGAATGAGAGGCAACTTCCTGAG
CAGCCCAATTAGTTGCTACACTCGCAAGGAGTAGGGGAATATGTGTAGAG
ACAAAGGGATAGAGATGCAGTGGGTGGAGATTAAAGGGAATAGGACCCCG
AAGAGAATAGCAAATGATGCGAGTGTCCCCTGCTTAGGATCGAATGTCAA
AGAGGTATTGGCGTGAGGAGGGAGGGGAAACACCAAGTCTTAGAGGAGCG
AGCTGCGCTGGCAGTCACATCAGGATAGACGAAGTCATGGGACTCAATAA
GAACAAAAGCGGCGGACGACTGTCCCTGACAACCAACTGTTACACTCA

protein sequence of NO04G03690.1

>NO04G03690.1-protein ID=NO04G03690.1-protein|Name=NO04G03690.1|organism=Nannochloropsis oceanica|type=polypeptide|length=150bp
MFGHPGHMLAFDQGGMNADMAHHLMLNPHHPHHHSHMLMDISETDREYRI
EVDLPGNKKDDIDISVDDDVLTIQTERREESSEDQLNYHVKERRVGKSKR
SIRLPKSADTDSIRAQYMDGVLRICVDKKTEKSQSKSVIITDHSYPFAK*

mRNA from alignment at chr4:1001134..1004305-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO04G03690.1 ID=NO04G03690.1|Name=NO04G03690.1|organism=Nannochloropsis oceanica|type=mRNA|length=3172bp|location=Sequence derived from alignment at chr4:1001134..1004305- (Nannochloropsis oceanica)
CCTTCCCACCCTCCCTCCCTGTGCTCACGCAGTCGACGCCTCCTTTATCT
CGAGCACCATCTTGGCATACGTTTCTTTCTCCTCCTTTCCTGCATCTTTA
TTGCTCACCAACACACAACTTGTTGGTCGCTTCACTGCCGCTGCACTGCC
CAGGTCATGCTTGGACGGTACGTAAATATAGGGGGTGTCTTTCTCCTCAC
ACAAGACTGCCAGGTGGCTTATGACGTCGACCGGGTAGATGTCCCCCGCG
ATGAGACAGATGCCTTTCTCGCCCTTCTTGAGTCCTTTTACCACTTCCTT
GACGCCGCGTTTAACGTTCTTGGCGGACGAGGCTTTTTTTACGAGCTTGT
AAAGTTTCTTGGTCAATTTCTTACCGGCCAGAGGCTTGGAGATGATACTG
ACAGCTTTTAACCGGTCTTCGTAGGATTTGGCGCTGTTGGTTAGGTGGAG
GGATGAGGGATGGATGGTGGCGTATGTGAGAGATGGTGAGCGCGGGAAGG
GAGAGTTAGGAGGGGAAACGTTATCAGCACTATGTCTTCGTGGGTCATGG
CTCTGCTTTGTTTTGGGGAGTGGATAGGGGAAGAAAGGTAAGCGGAGTGG
GATTCACAGAGTTCGCGTGCCAATGATATTGGCCTTGAATAGGTCACCAT
TTATTCATGCAAAGACATGATTGCATTCCAAGAAGGGCGATTGTGTGAAT
GAAATGAGTCAAGGGCGTTGCTGATAGGAGAGGTTGTACTTTGAGACGAC
GACTGGGCGACATTTTGTCGAAAGCATGCTTGTGCTCAAGTGATTTATCC
TGATCTCTGAGGAACGCAAAGCCTTGTCATTATAGTGGCTCTGAATTTTG
GGGAAAACGTGGCACACGGCGGCCGAGTTAAGAGGCCGAGGCAGGGAGTA
CCAAGTGCGGGTTGGTGTGAGCACAGGCCAAACTCTGCTCACAGCCTATA
ATTCTTGCTGCGCCGCGCCAGACTCTCAAACAGGGTATGCTAAAGGCGAG
GCGAACAAGAGCCCACAACGACAGGGCATAGAGAAGGTGGATGCATTGCG
AGAAGGCAGGGTATACTTGGATGGGTGGGGAGGCTGTGCAAGAACAAACG
TACCCTTTCTTCGTGCCCTCGTCGTCGCTCATGTTCCCGGTGCGACTGCA
GACTCTTCTGCTGCTCTTGAGCTGTAAGATTGTGGTGAAAGGGTGACATG
GCAAGTAAGTGGCAAAAGAAAAAAAATAGCTGGGGTCCATTGATTGATAT
CCGAGATGTGCCGAGTTTTTCTCCCGTCGGCATGCGTCGTGTGATGGATG
GTATACCTCAAGGTAAACCTTGTCCGGAGAGTCTCTTTACTGAACAAGGT
TTACAAAAAGCGGTCAATGATTGCTTGAGTCAATTTTCAGATTCATTTGT
AGCTAAAATGCTGCCCCCCCCCCCACCCAGCATAAAAGTGACTTCGTGTG
AGGTAACAGAACATACAGATGCCCATATGGAAGGTGAGGGAACTTACTTT
ACTTTTCGGGAACTTCTAGACGCCGCAAGCATCGGCACAAAATTTACTGA
ATCCCATACACACACCAGTAAATCGAAATCCTGTAACCCCCATTGATGCT
TGGCGCCGGCCTGTTGCAGGCTTCGTGCGTGCTGCACGAAATTGCCATCC
TTCCTCATCGCACTTCCCACATCTCCATCTGCTTTGCAGCCTGATGTGCT
TCTCTCTCTTGCGCAAGAGGCGCACCACAGCAAAGGCAGAGTGCATAGCT
TGGCCACAACATCGCAGTGGCCCACCAGTGTCCCTTTCGAGTATTGCAGG
GGAGAGATTTGCCGTGCCGTGGCTATCACATGGGACGAAACAAATTGGAC
AGAACATTTGAGGTCCGCTTCCCAGCTGGCGAATCGCATTATCCTGCAAG
CACCTGGCCCTATTGCGGAAAGGCGCATCAAGAGCCTCTCTCGCACCATT
AAATGCATCACTGATGTACTTGGCTATTATCCGTGGATTTGCTTACCCTT
TCCACCTTATCACCATCTCTACCCACCAAACAGAAAACATTACATAAATG
TTTGGGCATCCTGGCCATATGCTCGCGTTCGACCAAGGTGGGATGAATGC
TGACATGGCCCATCATCTGATGCTTAATCCCCACCATCCGCACCACCACT
CGCACATGTTGATGGATATCAGGTACGAGGATTGAGGGAGAAAATTGTGG
AAGAAGAAAATCGGAGGATTAAAGAAGAGTGAAGTGTTTTATGTACATGT
ATTCTTGGCAGCGCTTTATAAGGACTTCTTTCTTCTCACACTCCCTCTCA
TCCTCCTCCTCCCTCCTTCTCTCCCAACCTTTTGCTCACGACACAGTGAG
ACCGACCGTGAGTACCGCATCGAGGTTGACCTCCCCGGGAACAAGAAAGA
CGACATCGATATCAGCGTGGACGACGACGTGCTGACCATTCAAACAGAGC
GTCGGGAGGAGTCCAGCGAGGACCAACTTAACTATCATGTGAAAGAACGA
CGGGTGGGCAAGAGTAAACGCTCCATTCGTCTGCCCAAGAGCGCTGATAC
TGATTCGATTCGAGCGCAGTACATGGATGGGGTATTGCGAATCTGTGTGG
ACAAGAAGACGGAGAAGTCCCAGAGCAAAAGCGTTATAATTACTGACCAT
TCTTATCCTTTTGCGAAATGAGAAGGCCGCCCACCCCCGGAGGGGGCGGA
GGTGAGGAGCCGGAGATGGAGGAAGAAGGGTAGGACAAGTCGGCTACATC
GGGAAAGCGGAAGAGAGAGCGGAGTAAAGCGAGGTGGGGGTTAAGAAGAC
GTTGAGGTTTGAGACAGATGAAGAAAATGTGGTAGATAGAGAGCAAAGAC
GTGAATGAGAGGCAACTTCCTGAGCAGCCCAATTAGTTGCTACACTCGCA
AGGAGTAGGGGAATATGTGTAGAGACAAAGGGATAGAGATGCAGTGGGTG
GAGATTAAAGGGAATAGGACCCCGAAGAGAATAGCAAATGATGCGAGTGT
CCCCTGCTTAGGATCGAATGTCAAAGAGGTATTGGCGTGAGGAGGGAGGG
GAAACACCAAGTCTTAGAGGAGCGAGCTGCGCTGGCAGTCACATCAGGAT
AGACGAAGTCATGGGACTCAATAAGAACAAAAGCGGCGGACGACTGTCCC
TGACAACCAACTGTTACACTCA

Coding sequence (CDS) from alignment at chr4:1001134..1004305-

>NO04G03690.1 ID=NO04G03690.1|Name=NO04G03690.1|organism=Nannochloropsis oceanica|type=CDS|length=450bp|location=Sequence derived from alignment at chr4:1001134..1004305- (Nannochloropsis oceanica)
ATGTTTGGGCATCCTGGCCATATGCTCGCGTTCGACCAAGGTGGGATGAA
TGCTGACATGGCCCATCATCTGATGCTTAATCCCCACCATCCGCACCACC
ACTCGCACATGTTGATGGATATCAGTGAGACCGACCGTGAGTACCGCATC
GAGGTTGACCTCCCCGGGAACAAGAAAGACGACATCGATATCAGCGTGGA
CGACGACGTGCTGACCATTCAAACAGAGCGTCGGGAGGAGTCCAGCGAGG
ACCAACTTAACTATCATGTGAAAGAACGACGGGTGGGCAAGAGTAAACGC
TCCATTCGTCTGCCCAAGAGCGCTGATACTGATTCGATTCGAGCGCAGTA
CATGGATGGGGTATTGCGAATCTGTGTGGACAAGAAGACGGAGAAGTCCC
AGAGCAAAAGCGTTATAATTACTGACCATTCTTATCCTTTTGCGAAATGA

Synonyms

Publications