Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr4 genome chr4:948768..954110 -
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G03480.1 vs.
Match: EWM28819.1 (hypothetical protein Naga_100002g42 [Nannochloropsis gaditana])
HSP 1 Score: 334.3 bits (856), Expect = 1.800e-87
Identity = 404/1026 (39.38%), Postives = 509/1026 (49.61%), Query Frame = 0
Query: 399 RRGSP-TRCRNLVA--IFVLLLLAAS--EGFRVPLFSSPRVHGSRSKTTLYATEADSKTGGLNVTVPSVAGIAKPNESIT---EEKKPIVAAAEGATNRPRVAAPALKVVAAAPAKATAPAKAAPVPAVAKASMPDPMAAFKKAVTPAAKPKAPKPAPTPPP-AGKPPKSPQPFNGERLKEEIATAVGGAATGFIVGKVLESQAASDEASLTAASGAAVLGLVSYIVSRADNLAGVAARKTFGGLTLGFVNGVTGAITGAVSGALNGIKRGVQKKVDDIKSTPGRILNSIKAGINQKVEDVKALPGRTAQAAKRKAQATAEEIAAIPGRTATAISNSVTTTVEGIQVAVSDTVDSITRAPSTLIATITGDAPSSPASKSSSTGTASLSSVVKSVPAAAPSKPAVSLKIGGKPIDPSSISS--SSSSSSSSAAKPKSSSSPLSSSVSSSPAVTPALKFPNAGPAA--AKAPVPAAKAPEKKKEASGGFSFGGLFSPEKEVARKPAAPAVTSSTAEAAKPALKFPTAGPSASKTPVTAIPVAAKA---PEKKKEASGSFSFGGLFAPE--KELKKSVPPAAAGASATAKAAMASKSAALNFRASVPTVTKSMAAAPVSPASAAKATEKKEPAGSPFSSLFAPAPEVK-KIAPPARPPTTTPVKTPSPPLDSSNPFASLFGSGSSSTAPKKASSSTSSSPSSSSTTTTSSSAAA----MKKSSPANAPLKKTLPSPPAAAKVVSKVTTPPPQKKNLFSPPPRPKASVNPMLFKSPGNTGKASSTKEKEAAAAAPVAASKPVFRSPPPPSRPAAPTFPKAASPSVRKTTPAPTPAVAPKKD-SSGGGLFGGLFGSSSSSLSSSSSSSNIGRAKAGKAASKPLPPRPAPAAAAPKSARKASSGQGALGGIFGGGSSKAPPVKLAAAAATPAAAPKKPQASAASKPKVVASARADKTSSSSSSSPPSRSGAGLFGGLFGNGGGEASKPKQVATLKAGSAPKPGGKLDEVSLQSLKQTIRQEQSQALKSLGKK 1401
RR SP T+C A +FVL+L+ S EGFR F + R K L+AT+ D+K GG+NVTVPS+ G PN+++T EEK + ++RP+V A + + AP A A K P P+ KK+V P APT P A KP K +P + RL EEIATA+GG A GFI+G LE QA SDEA+LTAASGA VLGLVSYIVSRADNLAGVA RK+ GG TLG V G TGA+TG VSGA+NGIKRGVQ+KV+D+K+TPGRIL+ IKA +N +VE+VKA +P RTA A T E I T +I+ +SVV+SV K A+S I G PS + + + + SS +PK SS+P + PA+TP P A P+ AA +P S + V KPAAP LKF PS TP AI ++ P ++ AS + GG E K L S P +A SAT+ A S S +F++ + A+ + A KKE S F LFAP E K K+ PP P + P P S + FA LFGSG+S+ +PKKA S +S + T + AA K +PA K P PP+ A S TP FSPP RPK+S++P+L K G +S K +E AAP A K V+RSPPPPSRPA +FPK S+ P TP P D +SG G F GLFG S SSS S++IG+AKAGKA SKPLPP P +A P + + A+ +G GIFG +P P P KP+++ A D SS + + G G+FGGLFG E K +QV GSA GKLDEVSL SLKQTIR+EQ QALKSLGKK
Sbjct: 4 RRWSPCTQCAGSAAQSLFVLILVVVSCVEGFRFS-FPTKRNRLPSPKLVLFATDTDAKLGGVNVTVPSIPG---PNKALTNNDEEKIALTRPTSEVSSRPKVGVSAPPSSSESSKVVAAPTPAKSTSAPVKDPTPKPIFGSKKSVDAI-----PGEAPTKPKSADKPQKPVKPLDRARLIEEIATAIGGTAVGFILGTWLERQAQSDEATLTAASGATVLGLVSYIVSRADNLAGVAVRKSLGGATLGLVRGATGAVTGVVSGAINGIKRGVQQKVEDLKNTPGRILDGIKASLNARVEEVKA----------------------LPARTADAAKRKAQATAEEIAAVPGRTAQAIS------------------------------NSVVESVEGV---KAALSETIDGVARAPSELMARVTGETPSSPLPRPKPSSTP---PLPDKPALTP----PKAAATLKIGGKPISAAASPSS--------------SSPRSVPTKPAAPV------------LKFGGQSPSPRSTPSKAISTSSLGKGGPRREAPASPAPVLGGAKGQETKKPLTPSKPKLSASTSATS-APQVSGSPFPSFKSGPARSKPATASQTRNKGKEAPVLAKKE-GSSVFGRLFAPTQEPKAKVPPPPPASIPAPAEKPQAPAASPSLFAGLFGSGASA-SPKKAISPLTSPKNKPVTAAGKARTAAPPLTNKPVTPAPLTASKAPPRPPSTAPKPS--VTPKKPLNYKFSPPVRPKSSISPLLLK----PGAKASEKVEEENNAAP-APKKIVYRSPPPPSRPALASFPKI--KSLASAPPKETPVSPPVPDKASGAGPFAGLFGGRPLS-SSSKGSNSIGKAKAGKAPSKPLPPMAMPESAEP-ALKSANDSKGQFTGIFG---------------TSPTRTPSPP------KPQIMKPAAIDDKKSSQDAG--ASGGIGVFGGLFGKAKVETKKAQQVPKKPEGSA--KSGKLDEVSLLSLKQTIRREQKQALKSLGKK 893
The following BLAST results are available for this feature:
BLAST of NO04G03480.1 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
500 1000 1500 2000 2500 3000 3500 4000 Expect = 1.80e-87 / Id = 39.38 Sequence EWM28819.1
Match Name E-value Identity Description
EWM28819.1 1.800e-87 39.38 hypothetical protein Naga_100002g42 [Nannochlorops... [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO04G03480.1 ID=NO04G03480.1|Name=NO04G03480.1|organism=Nannochloropsis oceanica|type=mRNA|length=4203bp back to top protein sequence of NO04G03480.1
>NO04G03480.1-protein ID=NO04G03480.1-protein|Name=NO04G03480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1401bp back to top mRNA from alignment at chr4:948768..954110-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G03480.1 ID=NO04G03480.1|Name=NO04G03480.1|organism=Nannochloropsis oceanica|type=mRNA|length=5343bp|location=Sequence derived from alignment at chr4:948768..954110- (Nannochloropsis oceanica)ATGAATGTGCTCTTACCCCGTGGTGGATGGCTAGGAGGGCAGGAGGCAGG
TTGGGGCGGCGTCGCCTCAAAATTCAAGAATGCCGCCCATCAGTTGAGAA
TCATCTCCAAATTCTCAAACTCTACACCCATACCTCACGCACAGGTCGCG
GTCATGTATGGTGAGCACATGCAGCAAATCCCATCGGAGTACGGTTCGCA
AGCTGGCATTTTGTCAGCGGTTGTCGAGTCGTTGCCGACCTCAGGTAGGA
GCGTGTGCGGCATCAGCAGCACAGGAGAGTCCTCGTCCGAGGCCACCACT
ATCGAAGTGTGCTACCACACCTCGCGGCGTTCATTGCTCCAGGCCCTGCA
GCTTTCCCAGGTACTGCTGTCTGCCGTCGACAAAACCATCCAAACTATCA
ACGATCCCGAGATGATGCAAGGTAATGGATCCCTGCTCGCAGTCGAGGCT
ATGAAAGCGCGACTGCTCGGGTTCAAAGAAATGGCCCGCAAGAGCCGGAC
ATTGGAGCAGAGGGCGCTGAACGCACTTGACAATATGCGGGCACCGGTAA
CGCACGAGACCGCGGGAGCTGGATTGCCTGCCTCGGGGTCGGGTTGGATG
TCTCTCACGGAA GTGGGGCTGCTTATCAAGGGGCTTGTGTCCCCCCAACA
AATCGAGACTGAATGCGTGCTGCACCGGGAAAATGCCAAATTTTGAATGA
AGACGGAGAGCTTGCAACGCCAGGTTGAATTGCTTTCCTCTTCCTTGAAG
GCCGCCGACACCACATCTTCGGCGAGGGCAGCGCAGGTGGATGTCCCTTC
CTGGGTAATACGGGCCACGAAGCAGAATGCCCTTGATAATGGGGCCAATG
ACGGCACTGCAAAGATAGTGGCAAAGCTGCGGAGAGAATTGGAGGAGAAA
GAGGGGTTGCTAGCAGGGTTAAGGACAACGGTGCGCGACATGGCTGGTGG
CCGGTACCCTATTTTGGAGGAGAGGAATGATTTGCGAGCAAAGATTCAG G
TGAGTGTATGTCCACGGGAGGGGAGAGGCTCTTGCGGCATTACTATCAAA
GACAAGAAGTGAATAGGTATGATCGAAACATTTATTTGAATTCCACACAC
AGACACTGCTGCAGTCGCAAGCCCACTTGCTGGAAGACAGGGAGACTCTT
GAG GTAAGGGGGAGTCAGCGGGTCTGGTCGAACTTTCGCCCCTGGTTATT
AAACTCATCATTTCCTCTGCACTTCTCCCATTCTCATATACAGACACACA
ATGCTCGCATCGAGAGTCAATTGCGACGCACGGCTGATCGTTGCCAGGAG
TTGGAAGCTTAC GTGCGGTTCCTCGACGCTACTGCAGTGGCGGGGAAAGA
AGGGCGACGAGAGGGGAGATTTGCTTCCGCCTCTTTCGCCTTCCTGCCCT
CCCATGGTCCATTGCCAGCATGTCGAGGTCGTCAGCCTTTTGGGTGCCCA
AGCAGTGTCAATAAATGAAGCGAATGAACCAGAAACGGCACCCGATAACA
CTATCGCCGTGATGGGCGCCAAGGAAGAACAAG GTAAAATCGGGACAACT
CAATCTTTCTTCTTGTGGCTTCTATCGTTCTTTTTAAAGCCGCTGCAATT
GGAGGAGGATCACCACAATTACTCGCCGCCAGCCATGATTGTGTGGAGTT
TGAGTCACGTTGTCGTCCTTGTAGTGAGAACGAAAGAAGGGAGAATACTC
TGGGTCCAGCCTACTGATTCGACAGATGACCGGATTTTTCAAGGCACGGC
TGCTTTTCACCTTGATTTCAGAATAAAGCACTGTGAAACCAGTCGCAGCT
GATAGACCAAGCACATTACAAACATTAATCGAGTCACATTTATTGGTCGT
TCGTGTCTCGCATATGATTGGAATAGGCCGGAGCGATGGGCTCTCCTCAC
AAGAGCGAAAGCATTAGATAGGAACCGAAACAAAAAAATGATGAACGAAA
AAGAGGTATGTTTACGATACAGCTGCGAGCTACAGAAACACATCAGGCTG
CCAGCGAATCGAGGGAACCAT GTAAGGAGGGGAGGGTTCAACCATATCCT
TGCGCTTCATCATGACGACTACTTGCCCCGTTCGAGTTGCCTTTGTTCCA
ATCACATGATGTAGCCAGAACAGAATGGAGCCTTTTACTACACCCTTTAC
AAAGCTCTACCTCATTATTCATCATAGCGAAGGTTTGTCCGCCATGGACA
GAAGAGGGTCGCCGACCCGGTGCCGGAATCTGGTCGCCATCTTCGTCCTG
CTGCTACTTGCTGCCTCGGAGGGCTTTCGAGTACCATTATTTTCCAGCCC
TAGAGTTCATGGGTCAAGGTCCAAGACCACTCTGTATGCCACTGAGGCGG
ATTCCAAGACTGGCGGCTTAAACGTCACGGTG GTAAGTCAATGGGTATGA
GTTACTAAGACTCCAAACTGTGACAGTAGGCTGCAGCGGGCGTTGTCCCT
GGCTAGGGAATGACAGACAATTTTCTATCTGTCTCATACGTCATGTCGCT
CTGATAACTCCATACAGCCATCTGTAGCAGGTATCGCTAAGCCCAATGAA
AGCATCACCGAAGAGAAGAAGCCAATCGTGGCCGCGGCTGAGGGAGCCAC
GAACAGACCCCGTGTCGCTGCCCCGGCCCTCAAGGTAGTAGCAGCAGCTC
CAGCGAAGGCAACGGCTCCGGCTAAAGCAGCGCCAGTACCTGCGGTGGCG
AAGGCCTCCATGCCCGATCCCATGGCAGCTTTCAAGAAGGCCGTCACTCC
CGCTGCAAAGCCAAAGGCCCCTAAGCCTGCTCCCACTCCCCCACCGGCCG
GCAAGCCACCTAAGAGCCCCCAGCCCTTTAATGGGGAGCGGCTGAAGGAA
GAAATAGCCACTGCTGTGGGCGGGGCAGCCACGGGGTTCATTGTTGGAAA
AGTACTCGAAAGTCAAGCGGCGAGCGATGAAGCCAGCTTGACGGCGGCCT
CAGGCGCGGCGGTGCTAGGGCTGGTGTCTTACATCGTGTCTCGAGCTGAT
AATCTGGCAGGAGTAGCAGCACGCAAGACCTTCGGAGGCTTGACCCTAGG
TTTTGTTAACGGCGTGACCGGTGCCATTACGGGTGCAGTCTCTGGTGCGT
TGAATGGGATCAAGCGTGGGGTGCAGAAAAAGGTGGATGATATCAAGAGC
ACACCGGGTAGAATTCTGAATTCGATTAAAGCAGGTATCAATCAGAAGGT
TGAGGACGTGAAAGCTTTGCCGGGGCGTACTGCTCAGGCGGCCAAGCGCA
AGGCACAGGCGACGGCTGAGGAGATTGCTGCTATTCCTGGGCGGACGGCC
ACGGCTATCAGCAACTCGGTTACGACTACAGTAGAGGGAATCCAGGTGGC
TGTCTCTGATACTGTAGACAGCATCACTCGCGCCCCTTCGACGCTGATTG
CTACTATCACCGGCGACGCGCCTTCCTCCCCTGCATCCAAGTCCTCCTCT
ACCGGCACTGCTTCCTTGTCCTCTGTTGTGAAATCGGTGCCAGCGGCCGC
GCCGTCCAAGCCGGCTGTGTCCTTGAAGATTGGTGGCAAACCCATCGATC
CAAGCAGCATCAGCAGCAGTAGCAGTAGCAGTAGCAGTAGCGCCGCAAAG
CCTAAGTCATCCTCGTCTCCCCTCTCCTCCTCCGTTTCATCCAGCCCGGC
AGTCACTCCGGCTCTCAAGTTTCCTAACGCGGGACCAGCAGCAGCTAAGG
CGCCTGTACCAGCGGCCAAAGCGCCCGAAAAGAAGAAAGAAGCGTCCGGT
GGCTTTTCATTCGGTGGCCTTTTTTCCCCCGAAAAGGAAGTTGCCAGGAA
GCCCGCGGCCCCTGCTGTTACTAGCTCAACAGCGGAAGCAGCCAAGCCCG
CCTTGAAATTCCCTACCGCGGGACCTTCTGCATCTAAGACGCCCGTGACG
GCCATTCCCGTAGCTGCCAAAGCACCCGAAAAAAAGAAAGAAGCGTCTGG
TAGCTTTTCGTTCGGTGGCCTTTTTGCTCCAGAAAAGGAATTAAAGAAGA
GCGTGCCTCCTGCTGCAGCTGGCGCATCAGCAACGGCCAAGGCAGCGATG
GCCAGTAAATCGGCGGCTTTAAACTTTCGTGCCAGCGTACCTACTGTCAC
GAAATCGATGGCTGCTGCCCCGGTTTCACCTGCCTCAGCAGCAAAAGCAA
CGGAAAAGAAGGAGCCTGCCGGATCGCCTTTCAGTAGTCTATTTGCGCCC
GCCCCCGAGGTCAAGAAGATTGCTCCTCCCGCTCGTCCCCCCACAACCAC
CCCAGTGAAGACGCCTAGTCCTCCACTTGATTCTTCCAACCCTTTCGCGA
GTCTCTTCGGTTCAGGCTCTTCCTCCACAGCTCCCAAAAAAGCGAGCAGC
AGCACTTCCTCCTCCCCCTCCTCCTCCTCCACCACCACCACCAGCTCCTC
TGCCGCCGCCATGAAGAAATCTTCGCCAGCGAATGCCCCCCTAAAAAAAA
CACTTCCTTCTCCCCCAGCCGCCGCTAAGGTCGTCTCAAAGGTCACCACG
CCCCCCCCTCAAAAAAAGAATTTGTTTTCCCCTCCCCCTCGACCAAAAGC
ATCTGTCAACCCCATGCTCTTCAAATCTCCTGGCAATACGGGCAAGGCCA
GCTCCACGAAGGAAAAGGAAGCAGCTGCCGCCGCTCCTGTAGCAGCAAGT
AAGCCTGTCTTTCGCTCCCCTCCTCCTCCCTCCCGTCCTGCTGCACCGAC
CTTCCCCAAGGCTGCCTCTCCCTCTGTCAGAAAGACAACGCCTGCGCCCA
CACCAGCAGTTGCACCCAAGAAGGATTCGAGCGGCGGTGGTTTGTTTGGT
GGTCTTTTTGGCTCCTCCTCCTCCTCTTTATCCTCTTCCTCATCCTCTTC
AAATATCGGCAGGGCCAAAGCTGGCAAAGCGGCCTCCAAACCCTTACCAC
CTCGGCCTGCACCAGCAGCTGCTGCCCCTAAGTCTGCGCGTAAGGCCAGC
AGCGGCCAAGGTGCCTTAGGAGGTATTTTCGGTGGTGGGTCTTCGAAGGC
CCCCCCTGTCAAGCTGGCCGCCGCTGCTGCTACTCCTGCAGCTGCTCCCA
AGAAGCCGCAAGCCTCTGCTGCGTCCAAACCCAAGGTGGTCGCGTCTGCG
CGTGCTGATAAAACCTCGTCGTCCTCCTCCTCCTCGCCGCCGTCGAGAAG
TGGAGCTGGGTTATTTGGTGGACTCTTTGGGAACGGTGGCGGAGAAGCGA
GCAAGCCGAAACAGGTCGCGACATTGAAGGCAGGGAGTGCTCCTAAGCCT
GGAGGAAAGCTGGACGAGGTGAGCTTGCAGTCACTGAAGCAAACTATCCG
CCAGGAACAAAGCCAGGCACTCAAGTCTTTGGGCAAGAAGTAA back to top Coding sequence (CDS) from alignment at chr4:948768..954110-
>NO04G03480.1 ID=NO04G03480.1|Name=NO04G03480.1|organism=Nannochloropsis oceanica|type=CDS|length=4203bp|location=Sequence derived from alignment at chr4:948768..954110- (Nannochloropsis oceanica) back to top