NO04G03370.1, NO04G03370.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G03370.1
Unique NameNO04G03370.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1382
Alignment locationchr4:929730..931274 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:929730..931274 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO04G03370.1 vs.
Match: EWM28741.1 (hypothetical protein Naga_100002g53 [Nannochloropsis gaditana])

HSP 1 Score: 263.1 bits (671), Expect = 1.100e-66
Identity = 154/291 (52.92%), Postives = 197/291 (67.70%), Query Frame = 0 
Query:    8 AMVATILVVVCCFSKMGAAEEGFLGKATDKIKHAVGLETTDEATDREAYEQGRDAIKHGEGMMEHAKEKIGEMLHHKVKEPMEDNVEASKRKAQEQAEAAKAQGQGIYETIKEKMTGPFHLAKEKGQDAMKSAQERAEASAEYATEAAEETRRQSTQGYAKTKANVDQAAQKGQSTIRQMKEDVENVLEQQKIKAEGAYETMKEKTGETVEHAQQHAHDVKQRGKEGLAYATGAKDEAKGEGETLIGSATRKVKEALGTEHHEKP---TMEKATESGKKAMDKVKEKVGEL 296
            A  A +LV+V       AAEEGF+ KA DKIKH VGLET +EA   EAYE+GR  +KHGE +ME AKEKIG + HH  KEP +  ++ +K +A EQA A KA G GIY+T+KE +T PFH AKEK Q+  +SA ERAEA    A EA +E RRQ  QGY  TK   ++  QKGQS IRQMK++VEN+L+Q K K +   E +K  TGE +EHA+++AH+VKQ+G+EG A+  G KDE  G GETL+G+ATRK+KE  G EH  +     M+   E  ++AMD+ KE V EL
Sbjct:    8 AFGAVLLVLVA------AAEEGFMDKAADKIKHVVGLETAEEAPKYEAYEKGRGTVKHGEDVMERAKEKIGNIFHHHAKEPADLIMQEAKYQANEQANAVKAHGHGIYDTVKETVTAPFHSAKEKSQEMAESAHERAEAGVGCANEAMKEARRQGMQGYETTKGKTEETIQKGQSKIRQMKDNVENMLQQGKEKVDENIEAVKGVTGEKIEHAKEYAHEVKQKGEEGAAFKNGIKDETMGSGETLVGTATRKMKEVFGGEHVNRKGQNAMDTVEEKSREAMDRAKEGVEEL 292
The following BLAST results are available for this feature:
BLAST of NO04G03370.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28741.11.100e-6652.92hypothetical protein Naga_100002g53 [Nannochlorops... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G03370NO04G03370Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G03370.1NO04G03370.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G03370.1.cds1NO04G03370.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G03370.1.cds2NO04G03370.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G03370.1 ID=NO04G03370.1|Name=NO04G03370.1|organism=Nannochloropsis oceanica|type=mRNA|length=1382bp
TGACCTCCTATCTCCCCGTTCTCGCACACCAATACAACACGGAGGCGAGA
AACTAGCCGCGACAAGGTATTACTACATTTTCAATTAGACAACACTATTC
AAGTCAACAAACAAAGCTGCGAGCATGGTGCGCATCAGTTTCTTCGCAAT
GGTGGCCACGATCCTCGTTGTGGTGTGTTGCTTCAGCAAAATGGGTGCGG
CGGAGGAGGGATTTTTGGGGAAGGCAACCGACAAGATTAAGCACGCCGTA
GGATTGGAAACAACAGATGAAGCTACCGACCGTGAGGCGTATGAGCAGGG
AAGGGATGCAATCAAGCACGGCGAGGGTATGATGGAGCACGCCAAGGAGA
AGATTGGAGAAATGCTCCACCATAAAGTGAAGGAGCCAATGGAGGACAAT
GTGGAAGCAAGCAAGCGCAAGGCCCAGGAGCAGGCAGAGGCCGCCAAGGC
CCAGGGACAAGGTATCTACGAGACCATTAAGGAGAAGATGACTGGGCCGT
TCCATTTGGCAAAGGAGAAAGGTCAAGACGCGATGAAGAGCGCGCAGGAG
CGGGCGGAGGCAAGCGCCGAGTATGCGACTGAGGCCGCTGAAGAAACGCG
CCGACAGAGCACCCAAGGTTACGCGAAGACTAAAGCCAATGTTGACCAGG
CTGCTCAGAAGGGCCAGAGCACGATTCGTCAGATGAAGGAGGACGTGGAG
AACGTACTTGAACAGCAGAAGATCAAAGCCGAAGGTGCGTACGAAACCAT
GAAAGAAAAGACCGGCGAGACCGTGGAACACGCTCAGCAGCACGCTCACG
ACGTCAAGCAGCGCGGGAAGGAGGGCTTAGCATACGCTACGGGTGCTAAA
GATGAAGCGAAAGGCGAGGGCGAGACGCTGATTGGAAGCGCTACGCGCAA
GGTTAAGGAGGCTTTGGGGACGGAGCACCATGAGAAGCCCACGATGGAGA
AGGCGACTGAGAGTGGGAAAAAGGCTATGGACAAGGTAAAGGAAAAAGTC
GGGGAGCTTTAGATGATCTCTCACCACCATCACATGTCAACAGAGGAGCC
AGGCACTAATAAGGGGGAGAAGGGGCGGGGAGATGGAGAATGCTTCCACA
AGCAAATCAGTATTGACGTTGGATGTGATGGCATGCGAAAACAGAAGTTT
AAATCTTCAATGTGCAGCAAATGGGATACTTCTAAGGTGACAAATTGAAA
GGAAGAGACAGGAGAGAAAAAACAAAAGAAATTGCGAAAGCGCACAGGAA
GGAGGGGAGAGAAAGAAGAGATGTCTATCAAGATAACCAAAAAAAGGAAG
GGAGGGATCAATTACATTCATTCGCATGCAAAATTTAAGGAGGGAAGAAG
TTATGAAAGGAAAAAAAGACAATATCCAAGCA
back to top

protein sequence of NO04G03370.1

>NO04G03370.1-protein ID=NO04G03370.1-protein|Name=NO04G03370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=296bp
MVRISFFAMVATILVVVCCFSKMGAAEEGFLGKATDKIKHAVGLETTDEA
TDREAYEQGRDAIKHGEGMMEHAKEKIGEMLHHKVKEPMEDNVEASKRKA
QEQAEAAKAQGQGIYETIKEKMTGPFHLAKEKGQDAMKSAQERAEASAEY
ATEAAEETRRQSTQGYAKTKANVDQAAQKGQSTIRQMKEDVENVLEQQKI
KAEGAYETMKEKTGETVEHAQQHAHDVKQRGKEGLAYATGAKDEAKGEGE
TLIGSATRKVKEALGTEHHEKPTMEKATESGKKAMDKVKEKVGEL*
back to top

mRNA from alignment at chr4:929730..931274+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G03370.1 ID=NO04G03370.1|Name=NO04G03370.1|organism=Nannochloropsis oceanica|type=mRNA|length=1545bp|location=Sequence derived from alignment at chr4:929730..931274+ (Nannochloropsis oceanica)
TGACCTCCTATCTCCCCGTTCTCGCACACCAATACAACACGGAGGCGAGA
AACTAGCCGCGACAAGGTATTACTACATTTTCAATTAGACAACACTATTC
AAGTCAACAAACAAAGCTGCGAGCATGGTGCGCATCAGTTTCTTCGCAAT
GGTGGCCACGATCCTCGTTGTGGTGTGTTGCTTCAGCAAAATGGGTGCGG
CGGAGGAGGGATTTTTGGGGAAGGCAACCGACAAGATTAAGCACGCCGTA
GGATTGGAAACAACAGATGAAGCTACCGACCGTGAGGCGTATGAGCAGGG
AAGGGATGCAATCAAGCACGGCGAGGGTATGATGGAGCACGCCAAGGAGA
AGATTGGAGAAATGCTCCACCATAAAGTGAAGGAGCCAATGGAGGACAAT
GTGGAAGCAAGCAAGCGCAAGGCCCAGGAGCAGGCAGAGGCCGCCAAGGC
CCAGGGACAAGGTATCTACGAGACCATTAAGGAGAAGATGACTGGGCCGT
TCCATTTGGCAAAGGAGAAAGGTCAAGACGCGATGAAGAGCGCGCAGGAG
CGGGCGGAGGCAAGCGCCGAGTATGCGACTGAGGCCGCTGAAGAAACGCG
CCGACAGAGCACCCAAGGTTACGCGAAGACTAAAGCCAATGTTGACCAGG
CTGCTCAGAAGGGCCAGAGCACGATTCGTCAGATGAAGGAGGACGTGGAG
AACGTACTTGAACAGCAGAAGATCAAAGCCGAAGGTGCGTACGAAACCAT
GAAAGAAAAGACCGGCGAGACCGTGGAACACGCTCAGCAGCACGCTCACG
ACGTCAAGCAGCGCGGGAAGGAGGGCTTAGCATACGCTACGGGTGCTAAA
GATGAAGCGAAAGGCGAGGGCGAGACGCTGATTGGAAGCGCTACGCGCAA
GGTTAAGGAGGCTTTGGGGACGGAGCACCATGAGAAGCCCACGATGGAGA
AGGCGACTGAGAGTGGGAAAAAGGCTATGGACAAGGTAAAGGTACGAAAA
GTCTTGCAAAGGGGACGAAAGACTTGCACAATGAATGAAGGATGTGAAAC
ATAGATCGGGAGAGAGATTGAAGGCGAATTGTTCGAACGGTTAAGGGGTG
AAAATGGCAAAATGTTATTGGTTGACAGGCATATTCCTCTTTTCTACATA
ACAGGAAAAAGTCGGGGAGCTTTAGATGATCTCTCACCACCATCACATGT
CAACAGAGGAGCCAGGCACTAATAAGGGGGAGAAGGGGCGGGGAGATGGA
GAATGCTTCCACAAGCAAATCAGTATTGACGTTGGATGTGATGGCATGCG
AAAACAGAAGTTTAAATCTTCAATGTGCAGCAAATGGGATACTTCTAAGG
TGACAAATTGAAAGGAAGAGACAGGAGAGAAAAAACAAAAGAAATTGCGA
AAGCGCACAGGAAGGAGGGGAGAGAAAGAAGAGATGTCTATCAAGATAAC
CAAAAAAAGGAAGGGAGGGATCAATTACATTCATTCGCATGCAAAATTTA
AGGAGGGAAGAAGTTATGAAAGGAAAAAAAGACAATATCCAAGCA
back to top

Coding sequence (CDS) from alignment at chr4:929730..931274+

>NO04G03370.1 ID=NO04G03370.1|Name=NO04G03370.1|organism=Nannochloropsis oceanica|type=CDS|length=888bp|location=Sequence derived from alignment at chr4:929730..931274+ (Nannochloropsis oceanica)
ATGGTGCGCATCAGTTTCTTCGCAATGGTGGCCACGATCCTCGTTGTGGT
GTGTTGCTTCAGCAAAATGGGTGCGGCGGAGGAGGGATTTTTGGGGAAGG
CAACCGACAAGATTAAGCACGCCGTAGGATTGGAAACAACAGATGAAGCT
ACCGACCGTGAGGCGTATGAGCAGGGAAGGGATGCAATCAAGCACGGCGA
GGGTATGATGGAGCACGCCAAGGAGAAGATTGGAGAAATGCTCCACCATA
AAGTGAAGGAGCCAATGGAGGACAATGTGGAAGCAAGCAAGCGCAAGGCC
CAGGAGCAGGCAGAGGCCGCCAAGGCCCAGGGACAAGGTATCTACGAGAC
CATTAAGGAGAAGATGACTGGGCCGTTCCATTTGGCAAAGGAGAAAGGTC
AAGACGCGATGAAGAGCGCGCAGGAGCGGGCGGAGGCAAGCGCCGAGTAT
GCGACTGAGGCCGCTGAAGAAACGCGCCGACAGAGCACCCAAGGTTACGC
GAAGACTAAAGCCAATGTTGACCAGGCTGCTCAGAAGGGCCAGAGCACGA
TTCGTCAGATGAAGGAGGACGTGGAGAACGTACTTGAACAGCAGAAGATC
AAAGCCGAAGGTGCGTACGAAACCATGAAAGAAAAGACCGGCGAGACCGT
GGAACACGCTCAGCAGCACGCTCACGACGTCAAGCAGCGCGGGAAGGAGG
GCTTAGCATACGCTACGGGTGCTAAAGATGAAGCGAAAGGCGAGGGCGAG
ACGCTGATTGGAAGCGCTACGCGCAAGGTTAAGGAGGCTTTGGGGACGGA
GCACCATGAGAAGCCCACGATGGAGAAGGCGACTGAGAGTGGGAAAAAGG
CTATGGACAAGGTAAAGGAAAAAGTCGGGGAGCTTTAG
back to top
Synonyms
Publications