Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr4 genome chr4:925338..928894 +
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G03360.1 vs.
Match: EWM28815.1 (hypothetical protein Naga_100002g54 [Nannochloropsis gaditana])
HSP 1 Score: 139.4 bits (350), Expect = 5.500e-29
Identity = 129/417 (30.94%), Postives = 211/417 (50.60%), Query Frame = 0
Query: 512 ARQAVEELLHQQRRELEWYRAETERLQQSQVEGQSAVLAPEGGLGRDEEAAARQALEEALHQQEVKAAWLQKEIEQLRRERDEQQAAVAAASADASQGAEGGEMVQMLEGEIQRQRELLTSYEAELEQHRQDKAPMTARMTTIGATMPLTAPVVGQQQGGTEGQMVSLQPVGDEERQTLESTIQALEEANRQLVEGFQKVEGKLSRVKELESENRDLLLLVDELKDVLGNERENHHRHLEDSLSGLKNEIERLVDEVQRLEAADKELRLKKYNESLFVLKRVTHNVLAKQQLKTKQRAICRWVTAVNAMQGEELVAFREAAKQ---APQAEEIKQLEGENKALLEELQREPPTREGVMTGAVRGGTSAPGGSGIASFLSFWLKLFLVGSLFMFLQQVFAMLGGVSSYCYMETARITM 926
A++++E + Q+++ E RAE LQQ +++ A+ +EE AR +L + + +QE L+ + + R RDE + + +A + E+ Q + EIQ R+ + Y+AEL R+++ R T + V + T + L Q +STIQ LE+ NR L E + +E LS+V E+E E R+L+ VD LKD L ERE H +H E +++ L EI R+ E+ ++E A + + + N S+FVL+R+ N+ K LK +RA RWV + ++MQ E+L RE+ Q Q EE++QLE EN+ALLEEL+ +P + +++ G SF K+ LF+ L++ F + G Y+++ R+TM
Sbjct: 110 AKKSLEARILQEQQSAEQLRAE---LQQFRLKWDDALR----NAVHEEETTAR-SLRKQIEEQEEVVKILRHNLSNVERARDE----MGVRADEAGRQGTREELSQEEKEEIQSLRDEIEVYKAELVSFRREQLEKK-RTTAMNVA-------VSEHHSSTHEADMELP------EQPADSTIQRLEDVNRLLSERVRTLEEALSQVGEMEVEKRELMRCVDALKDALEQEREGHQQHFEKTVTTLNEEISRIAAEMHQMEKAKQRVEKDQQNISMFVLRRMLMNIRTKHMLKNSRRAFYRWVASTSSMQLEQLQTIRESGSQRLEGAQGEEVRQLEAENRALLEELKTKPAILD-ERVFSIQDGKDREKRWRSEGISSFAFKIIFAVLLFLALERGFVLHDGGYDLYYLDSPRVTM 499
The following BLAST results are available for this feature:
BLAST of NO04G03360.1 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
500 1000 1500 2000 2500 Expect = 5.50e-29 / Id = 30.94 Sequence EWM28815.1
Match Name E-value Identity Description
EWM28815.1 5.500e-29 30.94 hypothetical protein Naga_100002g54 [Nannochlorops... [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO04G03360.1 ID=NO04G03360.1|Name=NO04G03360.1|organism=Nannochloropsis oceanica|type=mRNA|length=2959bp back to top protein sequence of NO04G03360.1
>NO04G03360.1-protein ID=NO04G03360.1-protein|Name=NO04G03360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=926bp back to top mRNA from alignment at chr4:925338..928894+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G03360.1 ID=NO04G03360.1|Name=NO04G03360.1|organism=Nannochloropsis oceanica|type=mRNA|length=3557bp|location=Sequence derived from alignment at chr4:925338..928894+ (Nannochloropsis oceanica)ATGGCG
TCGACTTTTCTCCCGAGCAGTAACAGTGCCTTCATGGCGCCGCTACAGCC
TCCCTCGCCGCCTCCGCAGCCCAGCGATGTCCCTATGTCCTCTGCTCGTA
TCCGACTCTCGTATGAGTACGATTCGTACGAGGATGGGCCCTCGCCTGAG
TACCACGAAGTACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCTGCAGCAGCAGCATGTCTCGCACCAGCCTGCCT
CGGTCGGTACCAACGCAAAGAATGAGAGCACGAACTTCACACACGACGAC
TATGAATGGCTACACAACATCGACGAGGAGGTTCGGCGGCGCCATGAGGA
ACTGACCCGTGTCCGAGAAGCCAGTAAGGCCTCCGTGCATTTGTTGGAAA
ACAAGGCGCGGAGTGGACTGAGCCCGGCTTTTAGTCCCTCCGTGCAACAC
TTTGTTAGCAACGTGATGGCGCGAGGCACGGTCACATCATTCTTCCCCGG
CGATTCACTGTCCGGGCGCACACCTTCGGGTCCTGACGACGAGCGCACCC
CCACCACGCCGGGCGGGGGGGATTTCCTTCAAACCCCGCGCAGTACGGGT
GGTGGAGCTATCAATGCCAGCTCGTCTTTCCGCACCAAGGGTGCACTGGG
GTTCATCAAGGAAGAGGCCGTTCGCCTACGAG GTAAGGGAAGAATCTTTG
TGCAGAAGATTTGTGAGAAATGACAAGGGGAGGGAGGAAAGGAAGGGATG
ATGGTTGACGATGGCGTATGGCCTCTGTGTTGTGCGAGCTTCAGTCGAAG
AATATGGAGCTTGGGCTTATGTGCGAGCCATCTCTATCTACTATGAGTCA
CGACGTACTAATGTATACTTACTATCCTCTCATTTTACCCATAGCCGACC
TGGAACAGCAAGCGGGCCTGCTTGCAAGCGAAAAGCAATACAACGATCAG
CTCCAGGAAGAGGTGCGAAAGCTTGTCGGGGAGTCGGAGCGCCTGCGGCA
GGAATCAGAG GTAGGTTGGGTAGTGTCCTGTGTGTGTATTTTGAGCATGG
ATGAATTACACACCACGTGCAATGTAGCAATGGTACTCACCCCCCCACCC
CTTTCCATCCTTACACGTCCTCACCGGGCACGACAGGCTCAACTAGATCA
GCTGCGCCAGGAGCTCGCACGCAAACACCAGGCGTACGAAGAAATGAAAG
AATTTAGCGAGCAGGCTCAAGCCAAGGGACTAGACGCAGAGACGAGGCTG
CAGGCCACTATCGAGGAGATGCAGCGGGTGGCCGCCACGGGCCTGGAGCA
ACAGCAGCAGCAGCAGGGAGAGGAAATCGACGCGGCGGCCCATCCACATT
CCACGTTTGTCTACCAGGAAGAGCAGCTGTTTATCCTAAATCGTCAGGTT
GAGGAGCTGCGCCAGCAAGGCGCCACGGCTGAAGAGACTGCCAGGGCTGC
CACCCAAGCATTGGAGGACGAGCTGCAGCAGCAAAGGGAGGCGACAGACG
CCTACCGGCTCGAGGCGCGGCAGCTCCAATGGAAGTACGATCAGCAGCAG
GTCGAGAAACAGCAGCAGGAAGAAGCAGCAGCAGCAGAGGCAGAGGCAAC
GGTGAAAGGGATGCTTCCCCCAGCTCTTTCTCCGACAACTCCTCTCGGTG
GGTCGGGCGTTGATGCGGAGAGGTTGACGCAGGCATTAGCGGTCTCGGAA
GCAGCGAAAGAAGCGCTTGAGGGGGAGCTTCATCAGCAGCGACTGGACGC
GGAGTGGTATCGGGCGGAGATAAAGCGGCTGCAGCAGAAGCAAAGTCTGG
ACGAAGAGGGACAGGGAGTCGTAGCTCCGCCAGAGACAGGGCAGCGGGGA
GAAGAGGAAGCAGGTGCCCGGCAAGCCGTGGAGGAGTTGCTCCACCAGCA
GCGACGGGAACTGGAATGGTATCGGGCGGAAACGGAGCGGTTACAACAGA
GTCAGGTTGAGGGACAAAGCGCTGTTCTGGCACCGGAAGGGGGCCTGGGA
AGGGACGAGGAAGCGGCTGCCCGGCAAGCGCTGGAGGAGGCGCTTCACCA
GCAGGAAGTCAAGGCGGCGTGGCTACAAAAGGAGATAGAGCAGCTGCGAC
GAGAGCGAGATGAGCAACAGGCTGCAGTGGCGGCGGCCTCAGCAGATGCA
AGCCAGGGGGCAGAGGGGGGAGAGATGGTGCAGATGCTTGAGGGGGAGAT
TCAGCGGCAGAGGGAGCTACTGACGAGCTATGAGGCTGAGTTGGAACAGC
ACCGACAAGATAAGGCCCCTATGACCGCAAGGATGACGACGATCGGTGCT
ACCATGCCCCTGACGGCGCCTGTTGTGGGGCAACAGCAGGGAGGAACTGA
AGGGCAGATGGTCTCGTTGCAGCCGGTGGGAGATGAGGAACGACAGACAT
TGGAGTCAACTATCCAGGCGCTGGAGGAAGCCAATCGGCAACTGGTCGAG
GGGTTTCAAAAGGTGGAGGGGAAGTTGTCGCGAGTGAAAGAG GTCAGTTC
ACTGAAGTGCTTTGTTCGTGGCTTTCCAAATTGAGGGGATATTTTGACAC
CAATATTTCTTCTCTCTTCCTGTTTTTCCACCTCTTTCCACAGCTCGAGA
GCGAAAATCGGGATCTGCTGCTGTTGGTGGATGAGCTCAAAGATGTGTTG
GGCAATGAGCGAGAGAACCACCACAGGCACCTCGAAGATTCC GTAAGATA
GGGAAGGCTTGGGTGGGGTGGATTAGATCAAAGTTTGTACCTACCCGTCA
GCGTCTCATGTCATAACTTTTCTTACTTGCTCTTCGCTGTAGACCTCCAT
ACTGTTGATATTTAATTTCTCACCTGCGCTCCCCTAATCACGCATATACA
GTTGTCGGGACTGAAAAACGAGATCGAGCGGCTGGTCGATGAAGTCCAAC
GGCTAGAGGCGGCGGACAAAGAGTTGAGGCTAAAGAAATACAATGAATCG
CTTTTCGTGCTAAAGCGTGTGACGCATAATGTTCTTGCCAAGCAGCAGCT
CAAAACCAAACAGCGTGCGATTTGCCGCTGGGTAACGGCTGTCAATGCGA
TGCAGGGGGAAGAGCTTGTAGCGTTCCGAGAGGCGGCAAAGCAGGCACCA
CAGGCAGAGGAGATCAAGCAGCTAGAGGGCGAGAACAAGGCCTTGCTCGA
GGAGCTGCAGAGGGAGCCGCCCACCCGAGAAGGTGTGATGACAGGGGCAG
TGCGGGGAGGAACATCAGCTCCAGGAGGAAGCGGAATTGCGTCATTTTTG
AGTTTTTGGCTCAAGTTGTTCCTTGTCGGCAGCCTTTTCATGTTCCTGCA
GCAGGTCTTTGCCATGCTGGGTGGGGTTAGTTCCTACTGCTATATGGAAA
CAGCACGTATCACCATGTAA back to top Coding sequence (CDS) from alignment at chr4:925338..928894+
>NO04G03360.1 ID=NO04G03360.1|Name=NO04G03360.1|organism=Nannochloropsis oceanica|type=CDS|length=2778bp|location=Sequence derived from alignment at chr4:925338..928894+ (Nannochloropsis oceanica) back to top