Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr4 genome chr4:873528..876750 -
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G03190.1 vs.
Match: EWM28766.1 (hypothetical protein Naga_100002g71 [Nannochloropsis gaditana])
HSP 1 Score: 123.2 bits (308), Expect = 3.500e-24
Identity = 75/166 (45.18%), Postives = 83/166 (50.00%), Query Frame = 0
Query: 626 PPPYGSHRWLAEDDTASPYTPPPYGSHRWLAEKDPASPYTPPPYGSHRWLAEDDTASPYTPPPYGSHRWLAEKDPASPYTPPPYGSHRWLAEDDTASPYTPPPY-GSRQWLAKDNIATVPYGTTQPVMTERAHESKIALGEPLSTYHTKTQTVASLEIHGVNNTGR 791
PPP P PPP P PPPYGSHRWLA DD A PYTPPPYGSHRWLA D A PYTPPPYGSHRWLA DD A PY PPPY GS ++ D + H+ K G S+Y K + V LE + +GR
Sbjct: 55 PPPTALTAGWRRTTWRVPTRPPPTALTAGWRRTTWLVPTRPPPYGSHRWLAADDMAGPYTPPPYGSHRWLAADDMAGPYTPPPYGSHRWLAADDMAGPYAPPPYSGSAKFKVVDVV--------------EEHDKKDVAG---SSYTAKAENVFFLESRHTDKSGR 203
The following BLAST results are available for this feature:
BLAST of NO04G03190.1 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
500 1000 1500 2000 2500 Expect = 3.50e-24 / Id = 45.18 Sequence EWM28766.1
Match Name E-value Identity Description
EWM28766.1 3.500e-24 45.18 hypothetical protein Naga_100002g71 [Nannochlorops... [more]
back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO04G03190.1 ID=NO04G03190.1|Name=NO04G03190.1|organism=Nannochloropsis oceanica|type=mRNA|length=2993bp back to top protein sequence of NO04G03190.1
>NO04G03190.1-protein ID=NO04G03190.1-protein|Name=NO04G03190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=797bp back to top mRNA from alignment at chr4:873528..876750-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G03190.1 ID=NO04G03190.1|Name=NO04G03190.1|organism=Nannochloropsis oceanica|type=mRNA|length=3223bp|location=Sequence derived from alignment at chr4:873528..876750- (Nannochloropsis oceanica)ATGATCCTGATCCGCCGCGTCACCTTCGGCTCTTTGACACTCCTATTCTG
GACTATCGTCGCGCAAG GTAAGTTACGATCAGATTTATGAGGCTGTAAAG
ACTTAACTTGATTGGTGGGAAGGTCTTAGAGACAGGAATGACTGGAGGAG
GGGTGAAATACAACTTGCCTCAGACACTCCCTCATCTCCCTCACCTCCCC
TTTCATTCACTGTAGATTCGCCGTACACTCCTCCCCCCTACGGCTCTCAC
CGATGGCTGGCTGAAGAAG GTAATAAACATACTCCATATTCTAAGTCACT
TACTGACCCTTCCCACCTCTATCTAACACTGTATCCCTCCACTTCTACAA
GGCTGGCCCTATACCTCTTCCACCTACGGATCGCACCGCTGGCTTGCAGA
AAAGGACCCCACGAGCCCGTACACGCCTCCTCCTTATGGGTCCCACCGCT
GGCTCGCGGAAGATGACACGGCAAGCCCTTACACTCCTCCCCCCTACGGA
TCGCACCGCTGGCTTGCAGAGAAGGACCCCGCGAGCCCGTACACGCCCCC
TCCTTATGGGTCCCACCGCTGGCTCGCGGAAGATGACACGGCAAGCCCTT
ACACTCCTCCCCCCTACGGATCGCACCGCTGGCTTGCAGAGAAGGACCCC
GCGAGCCCGTACACGCCTCCTCCTTATGGGTCCCACCGCTGGCTCGCGGA
AGATGACACGGCAAGCCCTTACACTCCTCCCCCCTACGGATCGCACCGCT
GGCTTGCAGAGAAGGACCCCGCGAGCCCGTACACGCCTCCTCCTTATGGG
TCCCACCGCTGGCTCGCGGAAGATGACACGGCAAGCCCTTACACTCCTCC
CCCCTACGGATCGCACCGCTGGCTTGCAGAGAAGGACCCCGCGAGCCCGT
ACACGCCTCCTCCTTATGGGTCCCACCGCTGGCTCGCGGAAGATGACACG
GCAAGCCCTTACACTCCTCCCCCCTACGGATCGCACCGCTGGCTTGCAGA
GAAGGACCCCGCGAGCCCGTACACGCCCCCTCCTTATGGGTCCCACCGCT
GGCTCGCGGAAGATGACACGGCAAGCCCTTACACTCCTCCCCCCTACGGA
TCGCACCGCTGGCTTGCAGAGAAGGACCCCGCGAGCCCGTACACGCCTCC
TCCTTATGGGTCCCACCGCTGGCTCGCGGAAGATGACACGGCAAGCCCTT
ACACTCCTCCCCCCTACGGATCGCACCGCTGGCTTGCAGAGAAGGACCCC
GCGAGCCCGTACACGCCTCCTCCTTATGGGTCCCACCGCTGGCTCGCGGA
AGATGACACGGCAAGCCCTTACACTCCTCCCCCCTACGGATCGCACCGCT
GGCTTGCAGAGAAGGACCCCGCGAGCCCGTACACGCCTCCTCCTTATGGG
TCCCACCGCTGGCTCGCGGAAGATGACACGGCAAGCCCTTACACTCCTCC
CCCCTACGGATCGCACCGCTGGCTTGCAGAGAAGGACCCCGCGAGCCCGT
ACACGCCTCCTCCTTATGGGTCCCACCGCTGGCTCGCGGAAGATGACACG
GCAAGCCCTTACACTCCTCCCCCCTACGGATCGCACCGCTGGCTTGCAGA
GAAGGACCCCGCGAGCCCGTACACGCCTCCTCCTTATGGGTCCCACCGCT
GGCTCGCGGAAGATGACACGGCAAGCCCTTACACTCCTCCCCCCTACGGA
TCGCACCGCTGGCTTGCAGAGAAGGACCCCGCGAGCCCGTACACGCCTCC
TCCTTATGGGTCCCACCGCTGGCTCGCGGAAGATGACACGGCAAGCCCTT
ACACTCCTCCCCCCTACGGATCGCACCGCTGGCTTGCAGAGAAGGACCCC
GCGAGCCCGTACACGCCTCCTCCTTATGGGTCCCACCGCTGGCTCGCGGA
AGATGACACGGCAAGCCCTTACACTCCTCCCCCCTACGGATCGCACCGCT
GGCTTGCAGAGAAGGACCCCGCGAGCCCGTACACGCCTCCTCCTTATGGG
TCCCACCGCTGGCTCGCGGATAATGACACGGCAAGCCCTTACACTCCTCC
CCCCTACGGATCGCACCGCTGGCTTGCAGAGAAGGACCCCGCGAGCCCGT
ACACGCCTCCTCCTTATGGGTCCCACCGCTGGCTCGCGGAAGATGACACG
GCAAGCCCTTACACTCCTCCCCCCTACGGATCGCACCGCTGGCTTGCAGA
GAAGGACCCCGCGAGCCCGTACACGCCTCCTCCTTATGGGTCCCACCGCT
GGCTCGCGGAAGATGACACGGCAAGCCCTTACACTCCTCCCCCCTACGGA
TCGCACCGCTGGCTTGCAGAGAAGGACCCCGCGAGCCCGTACACGCCTCC
TCCTTATGGGTCCCACCGCTGGCTCGCGGAAGATGACACGGCAAGCCCTT
ACACTCCTCCCCCCTACGGATCGCGCCAGTGGTTGGCCAAAGACAATATC
GCTACTGTGCCGTATGGAACGACCCAGCCCGTGATGACCGAGCGAGCGCA
CGAGAGCAAAATCGCGCTAGGCGAGCCCTTGTCAACCTACCATACCAAGA
CGCAAACCGTCGCGAGCCTGGAGATCCACGGCGTCAACAACACCGGCCGT
CGGTATCTACGTCGGGGATAA back to top Coding sequence (CDS) from alignment at chr4:873528..876750-
>NO04G03190.1 ID=NO04G03190.1|Name=NO04G03190.1|organism=Nannochloropsis oceanica|type=CDS|length=2391bp|location=Sequence derived from alignment at chr4:873528..876750- (Nannochloropsis oceanica) back to top