NO04G03180.1, NO04G03180.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G03180.1
Unique NameNO04G03180.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length246
Alignment locationchr4:870823..871068 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:870823..871068 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G03180.1 vs.
Match: EWM28824.1 (hypothetical protein Naga_100002g73 [Nannochloropsis gaditana])

HSP 1 Score: 65.5 bits (158), Expect = 9.000e-8
Identity = 29/79 (36.71%), Postives = 50/79 (63.29%), Query Frame = 0 
Query:    3 VEDGRTAVATARSNAEEFYGTISTFMATEVAQAVAEFNTSTPSGTTTQQLLEPLRQILDSILQGRDIALYYHAICGRAG 82
            ++D ++ +   R+ +E+ +G I  FM T+V  AV  FNTS P GT+TQ L++PL+ + + +L+ R + L Y+A+    G
Sbjct:  307 LDDHQSVIIMTRNTSEDVFGKIQNFMQTDVPDAVTRFNTSAPPGTSTQLLMKPLQNVFEKLLRARSLMLRYYALVYEQG 385
The following BLAST results are available for this feature:
BLAST of NO04G03180.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
20406080100120140160180200220240Expect = 9.00e-8 / Id = 36.71SequenceEWM28824.1
Match NameE-valueIdentityDescription
EWM28824.19.000e-836.71hypothetical protein Naga_100002g73 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G03180NO04G03180Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G03180.1NO04G03180.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G03180.1.cds1NO04G03180.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G03180.1 ID=NO04G03180.1|Name=NO04G03180.1|organism=Nannochloropsis oceanica|type=mRNA|length=246bp
ATGGTGGTGGAGGACGGGCGCACGGCTGTGGCGACTGCACGTAGCAATGC
GGAGGAGTTTTACGGGACTATTTCCACCTTCATGGCAACGGAAGTCGCTC
AAGCGGTGGCAGAATTTAACACGAGCACGCCCTCCGGCACCACCACGCAA
CAACTTTTGGAGCCTTTGCGCCAGATTTTGGACTCTATCTTGCAGGGACG
AGACATAGCTCTATATTACCATGCCATTTGCGGAAGAGCAGGGTGA
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protein sequence of NO04G03180.1

>NO04G03180.1-protein ID=NO04G03180.1-protein|Name=NO04G03180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=82bp
MVVEDGRTAVATARSNAEEFYGTISTFMATEVAQAVAEFNTSTPSGTTTQ
QLLEPLRQILDSILQGRDIALYYHAICGRAG*
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mRNA from alignment at chr4:870823..871068-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G03180.1 ID=NO04G03180.1|Name=NO04G03180.1|organism=Nannochloropsis oceanica|type=mRNA|length=246bp|location=Sequence derived from alignment at chr4:870823..871068- (Nannochloropsis oceanica)
ATGGTGGTGGAGGACGGGCGCACGGCTGTGGCGACTGCACGTAGCAATGC
GGAGGAGTTTTACGGGACTATTTCCACCTTCATGGCAACGGAAGTCGCTC
AAGCGGTGGCAGAATTTAACACGAGCACGCCCTCCGGCACCACCACGCAA
CAACTTTTGGAGCCTTTGCGCCAGATTTTGGACTCTATCTTGCAGGGACG
AGACATAGCTCTATATTACCATGCCATTTGCGGAAGAGCAGGGTGA
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Coding sequence (CDS) from alignment at chr4:870823..871068-

>NO04G03180.1 ID=NO04G03180.1|Name=NO04G03180.1|organism=Nannochloropsis oceanica|type=CDS|length=246bp|location=Sequence derived from alignment at chr4:870823..871068- (Nannochloropsis oceanica)
ATGGTGGTGGAGGACGGGCGCACGGCTGTGGCGACTGCACGTAGCAATGC
GGAGGAGTTTTACGGGACTATTTCCACCTTCATGGCAACGGAAGTCGCTC
AAGCGGTGGCAGAATTTAACACGAGCACGCCCTCCGGCACCACCACGCAA
CAACTTTTGGAGCCTTTGCGCCAGATTTTGGACTCTATCTTGCAGGGACG
AGACATAGCTCTATATTACCATGCCATTTGCGGAAGAGCAGGGTGA
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Synonyms
Publications