NO04G02610.1, NO04G02610.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G02610.1
Unique NameNO04G02610.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1570
Alignment locationchr4:695782..698285 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:695782..698285 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G02610.1 vs.
Match: EWM28651.1 (Uncharacterized protein Naga_100177g17 [Nannochloropsis gaditana])

HSP 1 Score: 473.4 bits (1217), Expect = 5.300e-130
Identity = 240/306 (78.43%), Postives = 262/306 (85.62%), Query Frame = 0 
Query:    1 MPFIDTLRHALEQLRATAKASIPSHKVGEEEMTVDPALKGVERELQIALDELKAFKNEDINKPLHAKDLREPREILGHVDSLYHEGKFCVEGVEGIPHGQAKLASMLAEGHELLRECLERVDFYKVSEPLRPLQNKLDNVQHALNTLKDKPDLHPHDLLPLRRKLAEIDNLYHEAKFVESSPQRAGSAGGN-IPEGQAVLATALANAHETLRALLFKTDFYKVDEALFSIHDRIESIKMRLESLNRKENVAEKDLISLRDRLQRCDEEWKEGKIVVEGGRVPGGQAVVSKLLYEAHNLMSEVQNKM 306
            MPF+DTLRHALEQLRA  KA +P HKVG+EE+TVDPAL+GVE+EL+IALDELKAFKNED+NK LHAKDLREPREILGHVDSLYHEGKFCVEGV+GIPHGQAKLA MLAEGHELL ECLERVDFY VSEPLRPLQNKLDNVQHAL +L+DK DLHP DLLPLRRKLAEID  YHE +F     + AG  G + I EGQAVLA  L  AHETLRALL KTD+YKVD+ LFSIHDR+ESIKMRLE L R ENV EKDL SLR+RLQ CD EWKEGKI +E G VP GQAVVS+LLYE HNLM+ VQN+M
Sbjct:   21 MPFVDTLRHALEQLRAKFKADVPPHKVGDEELTVDPALQGVEKELRIALDELKAFKNEDVNKSLHAKDLREPREILGHVDSLYHEGKFCVEGVKGIPHGQAKLADMLAEGHELLHECLERVDFYTVSEPLRPLQNKLDNVQHALESLQDKEDLHPRDLLPLRRKLAEIDAHYHEGRF-----ESAGREGEHVIAEGQAVLAALLNKAHETLRALLLKTDYYKVDQELFSIHDRLESIKMRLEGLMRHENVTEKDLSSLRERLQHCDAEWKEGKIELESGDVPAGQAVVSRLLYETHNLMASVQNRM 321
The following BLAST results are available for this feature:
BLAST of NO04G02610.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28651.15.300e-13078.43Uncharacterized protein Naga_100177g17 [Nannochlor... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G02610NO04G02610Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G02610.1NO04G02610.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G02610.1.cds1NO04G02610.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G02610.1.cds2NO04G02610.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G02610.1.cds3NO04G02610.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G02610.1.cds4NO04G02610.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G02610.1.cds5NO04G02610.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G02610.1.cds6NO04G02610.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G02610.1 ID=NO04G02610.1|Name=NO04G02610.1|organism=Nannochloropsis oceanica|type=mRNA|length=1570bp
CATGCCCATATGTTGTTCTGTTCTGTTTTGCGCAGTGCAAGGTCTTGAAT
CTGTGCTTTGGACTGCGTTCGTGTGTGCATGGCTGGACCAGCCAAGACCC
CAAGTCTGCTTGAAAACCTCCTCCCCCTCCTCACCCCATATTTCCAGCAG
GGACAGTACCTCCTGCCCTATCCTTTTCTGGTACCACATGGCAGACCACA
TCGCGCTCCCAGAAACTAGTACTTTGCTCACTCTCCCCATCTTCACCCCA
CATCTTCACAGCCAGAAAACACCAAACCGATTCTAGTACCATCAACAACA
GAGATGCCGTTCATCGACACCCTCCGCCATGCCCTCGAGCAGCTACGCGC
TACGGCCAAGGCCTCTATTCCGTCCCACAAGGTCGGCGAGGAGGAGATGA
CCGTCGATCCGGCCCTGAAAGGCGTAGAGCGTGAGCTCCAGATCGCCTTG
GACGAGTTAAAGGCTTTTAAGAACGAGGACATAAACAAGCCGCTGCACGC
CAAGGACCTGCGAGAGCCACGAGAGATTCTGGGGCATGTGGACTCCCTGT
ACCACGAAGGCAAATTCTGTGTCGAAGGCGTGGAGGGGATTCCCCACGGT
CAAGCCAAGCTCGCTTCCATGCTCGCAGAGGGCCATGAGCTTTTGCGGGA
GTGCTTGGAACGGGTGGATTTCTACAAGGTCTCCGAGCCCCTCCGTCCGC
TTCAGAACAAGCTGGACAACGTGCAGCACGCCCTGAACACGCTCAAAGAC
AAACCCGACCTCCACCCCCATGACCTGCTCCCTCTCCGTCGAAAGCTGGC
TGAAATCGATAATCTTTACCATGAGGCGAAGTTTGTGGAGTCGAGTCCCC
AAAGAGCAGGGTCTGCGGGAGGGAATATCCCGGAGGGCCAGGCGGTCTTG
GCAACGGCCTTGGCCAATGCGCATGAGACGCTGCGGGCACTATTGTTCAA
GACGGACTTTTACAAGGTGGATGAAGCTCTGTTCTCCATCCATGACCGTA
TCGAGTCCATCAAAATGCGCCTCGAGAGCCTGAATCGCAAAGAAAATGTC
GCCGAGAAGGACTTGATTTCCCTGCGAGACCGGCTGCAGCGCTGTGACGA
GGAATGGAAGGAGGGCAAGATCGTGGTGGAGGGAGGGAGGGTGCCGGGAG
GGCAGGCGGTGGTGAGTAAGCTTTTGTATGAGGCGCATAATTTGATGAGC
GAGGTGCAGAATAAAATGTGAGGTGGCTGTGATGGAGGGAGGGGGGAAGA
AGAGGGGGGAGAGGGAGATGTAGTGTGTATTGATGGAGCTTATGGAGGGA
GCGAGAGAGACAGAGAGAGACAGAACGGGTTAGAGAGAGAGAAATGTACA
GGGAGGAGAGAGAGTGAGTGTGAATTTGTATTTGGTTGTGTGGAAGCGAA
ATTCCAAAAGACGTGATGACTCTCTTTCTGCCTTCGTATGTTTCCTTCGC
GGACTCGTTATTGCGGCGTTTTTGGTGCTGGTGCTGTCTGGAGAGAGAGA
GAGAAGATAGGGCACCCATATTTCGAAGGAATCCAAGATAAACTAATATG
CATTTGGGGGGGAGAGGGGG
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protein sequence of NO04G02610.1

>NO04G02610.1-protein ID=NO04G02610.1-protein|Name=NO04G02610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=306bp
MPFIDTLRHALEQLRATAKASIPSHKVGEEEMTVDPALKGVERELQIALD
ELKAFKNEDINKPLHAKDLREPREILGHVDSLYHEGKFCVEGVEGIPHGQ
AKLASMLAEGHELLRECLERVDFYKVSEPLRPLQNKLDNVQHALNTLKDK
PDLHPHDLLPLRRKLAEIDNLYHEAKFVESSPQRAGSAGGNIPEGQAVLA
TALANAHETLRALLFKTDFYKVDEALFSIHDRIESIKMRLESLNRKENVA
EKDLISLRDRLQRCDEEWKEGKIVVEGGRVPGGQAVVSKLLYEAHNLMSE
VQNKM*
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mRNA from alignment at chr4:695782..698285+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G02610.1 ID=NO04G02610.1|Name=NO04G02610.1|organism=Nannochloropsis oceanica|type=mRNA|length=2504bp|location=Sequence derived from alignment at chr4:695782..698285+ (Nannochloropsis oceanica)
CATGCCCATATGTTGTTCTGTTCTGTTTTGCGCAGTGCAAGGTCTTGAAT
CTGTGCTTTGGACTGCGTTCGTGTGTGCATGGCTGGACCAGCCAAGACCC
CAAGTCTGCTTGAAAACCTCCTCCCCCTCCTCACCCCATATTTCCAGCAG
GGACAGTACCTCCTGCCCTATCCTTTTCTGGTACCACATGGCAGACCACA
TCGCGCTCCCAGAAACTAGTACTTTGCTCACTCTCCCCATCTTCACCCCA
CATCTTCACAGCCAGAAAACACCAAACCGATTCTAGTACCATCAACAACA
GAGATGCCGTTCATCGACACCCTCCGCCATGCCCTCGAGCAGCTACGCGC
TACGGCCAAGGCCTCTATTCCGTCCCACAAGGTCGGCGAGGAGGAGATGA
CCGTCGATCCGGCCCTGAAAGGCGTAGAGCGTGAGGTGAGAGAGGAGCTA
GGAGGGCCGGTCGGGATGAAGTCATGTGTGGGGAGCGTTGCGTGTCCAAG
TGTGCGGGAGAGGGAGGTTGATAGATTTACAGGTGTCTCTTTGTGCGCCG
AGGTTTTAATGTCTATGGAGGTGTATTCTAATTTCAGCGCACATCATTTC
TCACAATCTGTATCCCTACCTTCTTCACTCTCTCCCTGTTTCTCTCTATC
CCCCTCCCTACCTACCACAGCTCCAGATCGCCTTGGACGAGTTAAAGGCT
TTTAAGAACGAGGACATAAACAAGCCGCTGCACGCCAAGGACCTGCGAGA
GCCACGAGAGATTCTGGGGCATGTGGTGCGTTGTTTGCTTAAGTCTCTTT
CTTCGGCCCTCTCGTCACCACTTGTCCCTCTACAAATCCCTCAAATCCCC
CTTCTCAATCATCATGCTCTCCCTTCTCTCCTTCCCCTCCTGTCATACCA
AAATGCAGGACTCCCTGTACCACGAAGGCAAATTCTGTGTCGAAGGCGTG
GAGGGGATTCCCCACGGTCAAGCCAAGCTCGCTTCCATGCTCGCAGAGGG
CCATGAGCTTTTGCGGGAGTGCTTGGAACGGGTGGATTTCTACAAGGTAC
GACTTTGTTACTGCTTTCCTCCGCTTCCCTTTCTCCCTCCCTCCTTCCGT
CGCTCCTTTCCTTTCTGTATTCCTCCCTTCCTCCCATGATCAAGTAAATC
CTCTTCCTTCCTTCCTCCCCTCCTCCTCTCCCAAGGTCTCCGAGCCCCTC
CGTCCGCTTCAGAACAAGCTGGACAACGTGCAGCACGCCCTGAACACGCT
CAAAGACAAACCCGACCTCCACCCCCATGACCTGCTCCCTCTCCGTCGAA
AGCTGGCTGAAATCGATAATCTTTACCATGAGGCGAAGTTTGTGGAGTCG
AGTCCCCAAAGAGCAGGGTCTGCGGGAGGGAATATCCCGGAGGGCCAGGC
GGTGAGCTTGGATGGAAAAAATGGGGCTTACGGAGGGAGGAGAGAAGCGG
AGGGGGAGAAGGGGGAAACAGTCGGGAATTCCGCTTTATCTCCTTTGTTT
GGATTGGCTGAGCTTTGCATTTTCTGACTGACCATTGCCCTTTCCCTTCT
TGCGGCTCTCTTCTTTTCTCGACTTTTCCCTCCACCAAACCACCATAGGT
CTTGGCAACGGCCTTGGCCAATGCGCATGAGACGCTGCGGGCACTATTGT
TCAAGACGGACTTTTACAAGGTAAGAACATATAAGAACATTTGCCCGTTG
GCCGAGCTCTCGCCGATTGCCTCCTCCTCAGATGCATGGAGAGGTGTCAA
GATGTGTGTCCCGAAAGACAAGCTCACACATCCTCTCCCCCCCATTCCGC
ATATCCATGGTCATTTCTGCGTCTGATTTCTACCGCTTTCAGTGATTTTC
ATCTCCCTTCCCCCACCCCCATCCCCGCCCCTTCTCCCCTTTCTCCCTAG
GTGGATGAAGCTCTGTTCTCCATCCATGACCGTATCGAGTCCATCAAAAT
GCGCCTCGAGAGCCTGAATCGCAAAGAAAATGTCGCCGAGAAGGACTTGA
TTTCCCTGCGAGACCGGCTGCAGCGCTGTGACGAGGAATGGAAGGAGGGC
AAGATCGTGGTGGAGGGAGGGAGGGTGCCGGGAGGGCAGGCGGTGGTGAG
TAAGCTTTTGTATGAGGCGCATAATTTGATGAGCGAGGTGCAGAATAAAA
TGTGAGGTGGCTGTGATGGAGGGAGGGGGGAAGAAGAGGGGGGAGAGGGA
GATGTAGTGTGTATTGATGGAGCTTATGGAGGGAGCGAGAGAGACAGAGA
GAGACAGAACGGGTTAGAGAGAGAGAAATGTACAGGGAGGAGAGAGAGTG
AGTGTGAATTTGTATTTGGTTGTGTGGAAGCGAAATTCCAAAAGACGTGA
TGACTCTCTTTCTGCCTTCGTATGTTTCCTTCGCGGACTCGTTATTGCGG
CGTTTTTGGTGCTGGTGCTGTCTGGAGAGAGAGAGAGAAGATAGGGCACC
CATATTTCGAAGGAATCCAAGATAAACTAATATGCATTTGGGGGGGAGAG
GGGG
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Coding sequence (CDS) from alignment at chr4:695782..698285+

>NO04G02610.1 ID=NO04G02610.1|Name=NO04G02610.1|organism=Nannochloropsis oceanica|type=CDS|length=918bp|location=Sequence derived from alignment at chr4:695782..698285+ (Nannochloropsis oceanica)
ATGCCGTTCATCGACACCCTCCGCCATGCCCTCGAGCAGCTACGCGCTAC
GGCCAAGGCCTCTATTCCGTCCCACAAGGTCGGCGAGGAGGAGATGACCG
TCGATCCGGCCCTGAAAGGCGTAGAGCGTGAGCTCCAGATCGCCTTGGAC
GAGTTAAAGGCTTTTAAGAACGAGGACATAAACAAGCCGCTGCACGCCAA
GGACCTGCGAGAGCCACGAGAGATTCTGGGGCATGTGGACTCCCTGTACC
ACGAAGGCAAATTCTGTGTCGAAGGCGTGGAGGGGATTCCCCACGGTCAA
GCCAAGCTCGCTTCCATGCTCGCAGAGGGCCATGAGCTTTTGCGGGAGTG
CTTGGAACGGGTGGATTTCTACAAGGTCTCCGAGCCCCTCCGTCCGCTTC
AGAACAAGCTGGACAACGTGCAGCACGCCCTGAACACGCTCAAAGACAAA
CCCGACCTCCACCCCCATGACCTGCTCCCTCTCCGTCGAAAGCTGGCTGA
AATCGATAATCTTTACCATGAGGCGAAGTTTGTGGAGTCGAGTCCCCAAA
GAGCAGGGTCTGCGGGAGGGAATATCCCGGAGGGCCAGGCGGTCTTGGCA
ACGGCCTTGGCCAATGCGCATGAGACGCTGCGGGCACTATTGTTCAAGAC
GGACTTTTACAAGGTGGATGAAGCTCTGTTCTCCATCCATGACCGTATCG
AGTCCATCAAAATGCGCCTCGAGAGCCTGAATCGCAAAGAAAATGTCGCC
GAGAAGGACTTGATTTCCCTGCGAGACCGGCTGCAGCGCTGTGACGAGGA
ATGGAAGGAGGGCAAGATCGTGGTGGAGGGAGGGAGGGTGCCGGGAGGGC
AGGCGGTGGTGAGTAAGCTTTTGTATGAGGCGCATAATTTGATGAGCGAG
GTGCAGAATAAAATGTGA
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Synonyms
Publications