NO04G02520.1, NO04G02520.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G02520.1
Unique NameNO04G02520.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1343
Alignment locationchr4:674480..676089 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:674480..676089 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G02520.1 vs.
Match: EWM28640.1 (conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 224.2 bits (570), Expect = 5.200e-55
Identity = 130/245 (53.06%), Postives = 163/245 (66.53%), Query Frame = 0 
Query:   43 DSRKGTAVAAAALDKKMPADTSSTFSSQEQTVEEYLKAHCSQLVGDLNAHAEGLIKNLQEELEKGKAEILALAQDNNALAPAAVQPPSSDSSTDASSGGAATSYSHPRPAEAAAAAASAPPTVPAYQTIILHVKEGPYASCTFKLIQSKARKEFIIGRSTGKKVKDHGVSLPQDPEVSTVHGRVEVRGNGNIVFEDLGSTNGSFINSISLEERVPQVLRTDDVLK-----CGGTIMTVELQQQGE 283
            ++R G++V  +  D K+  D S   +SQ+QTVEEYLK HCSQLVGDLNAHAE LIKNLQ ELE+GKAEI+ + Q N              +S+DA   GA+TS +       + AA++ PP    + T+IL V +GPYA   F+L+QSK RKEF++GRSTGKKVK+HG S+PQDPEVSTVHGR E R  G +++EDLGSTNGSFIN   LEERVP  ++T DVLK     C        L+Q GE
Sbjct:    6 EARAGSSVGVS--DLKVMGDPS--LASQDQTVEEYLKVHCSQLVGDLNAHAESLIKNLQHELERGKAEIMGMVQGNTV----------GPTSSDAGDSGASTSTATGNVPARSVAASTGPPG-STFLTVILTVTDGPYAGTVFRLVQSKGRKEFVVGRSTGKKVKEHGASMPQDPEVSTVHGRFECRAGGKVMYEDLGSTNGSFINGACLEERVPTRVQTGDVLKDRPGVCWADRSRQRLEQGGE 235
The following BLAST results are available for this feature:
BLAST of NO04G02520.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28640.15.200e-5553.06conserved unknown protein [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G02520NO04G02520Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G02520.1NO04G02520.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G02520.1.cds1NO04G02520.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G02520.1.cds2NO04G02520.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G02520.1.cds3NO04G02520.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G02520.1 ID=NO04G02520.1|Name=NO04G02520.1|organism=Nannochloropsis oceanica|type=mRNA|length=1343bp
TGCTGGCTCATTCTCTTCGGCCATCAGTCATTCAGACCACTTGGGCAGAA
ATCATCACAGTCACACATTGATTGACAACTTCCGTAGCGCAGATGCAGGC
ATCCGCCTTCGACCTCGAATCACTACTTCGACTTCCCCGATCGCCAAGAG
TGCTGACCAGCGATTTTCGCCATGATGCATCGAGATCGAGAGAAGGCTCC
CCTTAGGCTCTTCCATTCCCGTTTGAGCACTTTCCATTCACTCGCAGGCA
CTCACACACCACCACATGCCCACAGAAAGTACATAACCAAGGCTATGGAC
AGTCGGAAAGGTACCGCAGTCGCTGCGGCCGCCCTGGACAAGAAGATGCC
CGCGGACACATCTTCAACGTTTTCATCGCAGGAGCAGACCGTGGAGGAGT
ACCTCAAGGCACACTGCAGCCAATTGGTAGGAGATCTGAATGCCCACGCC
GAAGGCCTCATCAAGAACTTGCAAGAAGAACTTGAGAAGGGCAAGGCCGA
GATCTTGGCGCTTGCCCAAGACAATAATGCACTGGCTCCTGCCGCAGTAC
AACCACCCAGCAGTGACAGCAGCACTGATGCCTCCTCAGGAGGCGCTGCC
ACCTCTTACTCTCATCCTCGACCAGCAGAAGCCGCCGCAGCAGCAGCCAG
TGCCCCACCCACCGTCCCCGCATACCAAACAATCATTCTCCACGTCAAAG
AAGGCCCATATGCCAGTTGTACTTTTAAACTGATTCAAAGCAAGGCACGG
AAGGAGTTCATCATTGGAAGGTCAACGGGAAAAAAGGTGAAGGACCATGG
GGTCAGCTTGCCCCAGGACCCGGAGGTATCGACGGTGCATGGACGGGTTG
AGGTGCGGGGGAACGGCAATATAGTTTTTGAGGACCTGGGGAGCACGAAT
GGGAGTTTTATCAATAGTATTAGTCTGGAAGAGCGCGTGCCTCAAGTCCT
TAGAACGGACGACGTGTTGAAGTGTGGTGGAACCATCATGACAGTGGAGC
TGCAGCAACAAGGCGAAGCCCAGTGAGACTGGAGAAAGAGTATGGAGAGA
GAGATGGAGGGGAATGACAAAGTCAATTAATCGTCTTAATTGTGGTTCTC
TTCTCAGATCGTGTGTATGTTTGATTCCTTGTTTTTCTCTCCTCTAAAAA
GCAGCTGTACATGAAGAAATCAAACGGAAGCAAGCAAGGAGATAATCGAA
GGCACCGCGTGGCCTAGGAAAAAGAAATGAGTGAATGGTTAAGCATGTTA
GAGAAAACAAGGTGTTATGCTCAGTGTGTTGGTATGGTGGAGGCTCAGAG
AGCCGACAGCAAAGACAAGGAACGAATACATACGAACAACAAA
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protein sequence of NO04G02520.1

>NO04G02520.1-protein ID=NO04G02520.1-protein|Name=NO04G02520.1|organism=Nannochloropsis oceanica|type=polypeptide|length=285bp
MMHRDREKAPLRLFHSRLSTFHSLAGTHTPPHAHRKYITKAMDSRKGTAV
AAAALDKKMPADTSSTFSSQEQTVEEYLKAHCSQLVGDLNAHAEGLIKNL
QEELEKGKAEILALAQDNNALAPAAVQPPSSDSSTDASSGGAATSYSHPR
PAEAAAAAASAPPTVPAYQTIILHVKEGPYASCTFKLIQSKARKEFIIGR
STGKKVKDHGVSLPQDPEVSTVHGRVEVRGNGNIVFEDLGSTNGSFINSI
SLEERVPQVLRTDDVLKCGGTIMTVELQQQGEAQ*
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mRNA from alignment at chr4:674480..676089+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G02520.1 ID=NO04G02520.1|Name=NO04G02520.1|organism=Nannochloropsis oceanica|type=mRNA|length=1610bp|location=Sequence derived from alignment at chr4:674480..676089+ (Nannochloropsis oceanica)
TGCTGGCTCATTCTCTTCGGCCATCAGTCATTCAGACCACTTGGGCAGAA
ATCATCACAGTCACACATTGATTGACAACTTCCGTAGCGCAGATGCAGGC
ATCCGCCTTCGACCTCGAATCACTACTTCGACTTCCCCGATCGCCAAGAG
TGCTGACCAGCGATTTTCGCCATGATGCATCGAGATCGAGAGAAGGCTCC
CCTTAGGCTCTTCCATTCCCGTTTGAGCACTTTCCATTCACTCGCAGGCA
CTCACACACCACCACATGCCCACAGAAAGTACATAACCAAGGCTATGGAC
AGTCGGAAAGGTACCGCAGTCGCTGCGGCCGCCCTGGACAAGAAGATGCC
CGCGGACACATCTTCAACGTTTTCATCGCAGGAGCAGACCGTGGAGGAGT
ACCTCAAGGCACACTGCAGCCAATTGGTAGGAGATCTGAATGCCCACGCC
GAAGGCCTCATCAAGAACTTGCAAGAAGAACTTGAGAAGGGCAAGGCCGA
GATCTTGGCGCTTGCCCAAGACAATAATGGTAGGCTTTGATGGCACCATG
AATGACGATGGGGAGGCTGGGAGGGAGGGAATGAAGGAGGCAATTAAGTC
CGTACTTATGAAAGCCACGCATTCTTACTTCCACTTCTCCACGCAAACAA
AACCAGCACTGGCTCCTGCCGCAGTACAACCACCCAGCAGTGACAGCAGC
ACTGATGCCTCCTCAGGAGGCGCTGCCACCTCTTACTCTCATCCTCGACC
AGCAGAAGCCGCCGCAGCAGCAGCCAGTGCCCCACCCACCGTCCCCGCAT
ACCAAACAATCATTCTCCACGTCAAAGAAGGCCCATATGCCAGTTGTACT
TTTAAACTGATTCAAAGCAAGGCACGGAAGGAGTTCATCATTGGAAGGTC
AACGGGAAAAAAGGTGAAGGACCATGGGGTCAGCTTGCCCCAGGACCCGG
AGGTATCGACGGTGCATGGACGGGTTGAGGTGCGGGGGAACGGCAATATA
GTTTTTGAGGACCTGGGGAGCACGAATGGGAGTTTTATCAATAGGTATGT
AGATTTGGGATGGGGGGCGGAAATAAGGGGGGTGGGAGGGAGATGGACTA
GGTAGTATATTTGAGTTATTTTTTATCATTAAATTCTCGTCACCCGGCTC
ACATCCCTCTTTCTTACCTGTACCTTCTTAACAGTATTAGTCTGGAAGAG
CGCGTGCCTCAAGTCCTTAGAACGGACGACGTGTTGAAGTGTGGTGGAAC
CATCATGACAGTGGAGCTGCAGCAACAAGGCGAAGCCCAGTGAGACTGGA
GAAAGAGTATGGAGAGAGAGATGGAGGGGAATGACAAAGTCAATTAATCG
TCTTAATTGTGGTTCTCTTCTCAGATCGTGTGTATGTTTGATTCCTTGTT
TTTCTCTCCTCTAAAAAGCAGCTGTACATGAAGAAATCAAACGGAAGCAA
GCAAGGAGATAATCGAAGGCACCGCGTGGCCTAGGAAAAAGAAATGAGTG
AATGGTTAAGCATGTTAGAGAAAACAAGGTGTTATGCTCAGTGTGTTGGT
ATGGTGGAGGCTCAGAGAGCCGACAGCAAAGACAAGGAACGAATACATAC
GAACAACAAA
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Coding sequence (CDS) from alignment at chr4:674480..676089+

>NO04G02520.1 ID=NO04G02520.1|Name=NO04G02520.1|organism=Nannochloropsis oceanica|type=CDS|length=855bp|location=Sequence derived from alignment at chr4:674480..676089+ (Nannochloropsis oceanica)
ATGATGCATCGAGATCGAGAGAAGGCTCCCCTTAGGCTCTTCCATTCCCG
TTTGAGCACTTTCCATTCACTCGCAGGCACTCACACACCACCACATGCCC
ACAGAAAGTACATAACCAAGGCTATGGACAGTCGGAAAGGTACCGCAGTC
GCTGCGGCCGCCCTGGACAAGAAGATGCCCGCGGACACATCTTCAACGTT
TTCATCGCAGGAGCAGACCGTGGAGGAGTACCTCAAGGCACACTGCAGCC
AATTGGTAGGAGATCTGAATGCCCACGCCGAAGGCCTCATCAAGAACTTG
CAAGAAGAACTTGAGAAGGGCAAGGCCGAGATCTTGGCGCTTGCCCAAGA
CAATAATGCACTGGCTCCTGCCGCAGTACAACCACCCAGCAGTGACAGCA
GCACTGATGCCTCCTCAGGAGGCGCTGCCACCTCTTACTCTCATCCTCGA
CCAGCAGAAGCCGCCGCAGCAGCAGCCAGTGCCCCACCCACCGTCCCCGC
ATACCAAACAATCATTCTCCACGTCAAAGAAGGCCCATATGCCAGTTGTA
CTTTTAAACTGATTCAAAGCAAGGCACGGAAGGAGTTCATCATTGGAAGG
TCAACGGGAAAAAAGGTGAAGGACCATGGGGTCAGCTTGCCCCAGGACCC
GGAGGTATCGACGGTGCATGGACGGGTTGAGGTGCGGGGGAACGGCAATA
TAGTTTTTGAGGACCTGGGGAGCACGAATGGGAGTTTTATCAATAGTATT
AGTCTGGAAGAGCGCGTGCCTCAAGTCCTTAGAACGGACGACGTGTTGAA
GTGTGGTGGAACCATCATGACAGTGGAGCTGCAGCAACAAGGCGAAGCCC
AGTGA
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Synonyms
Publications