NO04G02480.1, NO04G02480.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G02480.1
Unique NameNO04G02480.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length498
Alignment locationchr4:666086..666583 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:666086..666583 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G02480.1 vs.
Match: EWM28634.1 (sulfotransferase [Nannochloropsis gaditana])

HSP 1 Score: 165.2 bits (417), Expect = 1.700e-37
Identity = 78/116 (67.24%), Postives = 94/116 (81.03%), Query Frame = 0 
Query:    1 MTYEEFKTRFLASRPLGHGSHSLLGRGLYALQLQPWMAEFGGDKGQLMVLFTEEMRTGEAAQTQVGKVFAFLGLPPHDIIDTDAKHTRQYEQLDEKMQARLAAFYAPFNDKLFEML 117
            M Y+EFK  +L+SRPLGHGSHSLLGRGLYALQLQPW+  FG D  QLMV+F E+M +  A Q Q+GKVF FLGLPPH IIDT AK+TR Y  +DE+ +ARL+AFYAPFN +LF++L
Sbjct:  471 MNYQEFKDGYLSSRPLGHGSHSLLGRGLYALQLQPWLEAFGRD--QLMVMFMEDMASHNAVQAQLGKVFDFLGLPPHSIIDTHAKNTRAYTPMDERTKARLSAFYAPFNQQLFQIL 584
The following BLAST results are available for this feature:
BLAST of NO04G02480.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
50100150200250300350400450Expect = 1.70e-37 / Id = 67.24SequenceEWM28634.1
Match NameE-valueIdentityDescription
EWM28634.11.700e-3767.24sulfotransferase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G02480NO04G02480Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G02480.1NO04G02480.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G02480.1.cds1NO04G02480.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G02480.1 ID=NO04G02480.1|Name=NO04G02480.1|organism=Nannochloropsis oceanica|type=mRNA|length=498bp
ATGACGTACGAAGAGTTTAAGACACGGTTTTTAGCTTCGAGACCACTTGG
GCATGGCAGCCATTCGTTGCTAGGGAGAGGGCTGTATGCCTTGCAGTTGC
AGCCGTGGATGGCTGAATTTGGGGGAGACAAGGGTCAGTTGATGGTATTG
TTTACCGAGGAGATGAGGACGGGGGAGGCGGCGCAGACACAGGTCGGCAA
GGTGTTTGCGTTCTTGGGGCTGCCTCCTCATGACATAATTGATACAGATG
CCAAGCATACTAGGCAGTACGAACAGTTGGACGAAAAAATGCAAGCGAGG
TTGGCAGCATTTTACGCGCCGTTTAATGACAAGTTGTTTGAGATGTTGGC
GCGACCGAGGGGGATGGCGGGGTGGGCGGGGATGAAAGAGGAGGGAGGGG
TTCGCAATGGACAGGTACTGTCCGTAGACGAGGCGAAGTCGGAGCAGCTT
CGTACAAATGTAAGGACTGAACAAAATATGCGGCGAAAGCGGGAATAA
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protein sequence of NO04G02480.1

>NO04G02480.1-protein ID=NO04G02480.1-protein|Name=NO04G02480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=166bp
MTYEEFKTRFLASRPLGHGSHSLLGRGLYALQLQPWMAEFGGDKGQLMVL
FTEEMRTGEAAQTQVGKVFAFLGLPPHDIIDTDAKHTRQYEQLDEKMQAR
LAAFYAPFNDKLFEMLARPRGMAGWAGMKEEGGVRNGQVLSVDEAKSEQL
RTNVRTEQNMRRKRE*
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mRNA from alignment at chr4:666086..666583+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G02480.1 ID=NO04G02480.1|Name=NO04G02480.1|organism=Nannochloropsis oceanica|type=mRNA|length=498bp|location=Sequence derived from alignment at chr4:666086..666583+ (Nannochloropsis oceanica)
ATGACGTACGAAGAGTTTAAGACACGGTTTTTAGCTTCGAGACCACTTGG
GCATGGCAGCCATTCGTTGCTAGGGAGAGGGCTGTATGCCTTGCAGTTGC
AGCCGTGGATGGCTGAATTTGGGGGAGACAAGGGTCAGTTGATGGTATTG
TTTACCGAGGAGATGAGGACGGGGGAGGCGGCGCAGACACAGGTCGGCAA
GGTGTTTGCGTTCTTGGGGCTGCCTCCTCATGACATAATTGATACAGATG
CCAAGCATACTAGGCAGTACGAACAGTTGGACGAAAAAATGCAAGCGAGG
TTGGCAGCATTTTACGCGCCGTTTAATGACAAGTTGTTTGAGATGTTGGC
GCGACCGAGGGGGATGGCGGGGTGGGCGGGGATGAAAGAGGAGGGAGGGG
TTCGCAATGGACAGGTACTGTCCGTAGACGAGGCGAAGTCGGAGCAGCTT
CGTACAAATGTAAGGACTGAACAAAATATGCGGCGAAAGCGGGAATAA
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Coding sequence (CDS) from alignment at chr4:666086..666583+

>NO04G02480.1 ID=NO04G02480.1|Name=NO04G02480.1|organism=Nannochloropsis oceanica|type=CDS|length=498bp|location=Sequence derived from alignment at chr4:666086..666583+ (Nannochloropsis oceanica)
ATGACGTACGAAGAGTTTAAGACACGGTTTTTAGCTTCGAGACCACTTGG
GCATGGCAGCCATTCGTTGCTAGGGAGAGGGCTGTATGCCTTGCAGTTGC
AGCCGTGGATGGCTGAATTTGGGGGAGACAAGGGTCAGTTGATGGTATTG
TTTACCGAGGAGATGAGGACGGGGGAGGCGGCGCAGACACAGGTCGGCAA
GGTGTTTGCGTTCTTGGGGCTGCCTCCTCATGACATAATTGATACAGATG
CCAAGCATACTAGGCAGTACGAACAGTTGGACGAAAAAATGCAAGCGAGG
TTGGCAGCATTTTACGCGCCGTTTAATGACAAGTTGTTTGAGATGTTGGC
GCGACCGAGGGGGATGGCGGGGTGGGCGGGGATGAAAGAGGAGGGAGGGG
TTCGCAATGGACAGGTACTGTCCGTAGACGAGGCGAAGTCGGAGCAGCTT
CGTACAAATGTAAGGACTGAACAAAATATGCGGCGAAAGCGGGAATAA
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Synonyms
Publications