NO04G02260.1, NO04G02260.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G02260.1
Unique NameNO04G02260.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1140
Alignment locationchr4:644610..645749 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:644610..645749 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G02260.1 vs.
Match: EWM28634.1 (sulfotransferase [Nannochloropsis gaditana])

HSP 1 Score: 416.4 bits (1069), Expect = 9.600e-113
Identity = 207/319 (64.89%), Postives = 253/319 (79.31%), Query Frame = 0 
Query:   12 VQFLLPMSVAATLHNIYLSHGTKINQTRRSINLESERGIRPCPSYIIIGAQKCGTTSLYEYLCQHPLVLRANRRETHYLDRRWRREEGLTWREHRDTYHKFFNKTFPYENSSRIIGESSPSYMLYSDVVVPRVRELAPEAKMLVMLRCPVARAYSQFQMLIDTEGEGTPEQKKARGTLWKGKSFEEVVEKELEELEACGVTPDMTYEEFKTRFLASRPLGHGSHSLLGRGLYALQLQPWMAEFGGDKGQLMVLFTEEMRTGEAAQTQVGKVFAFLGLPPHDIIDTDAKHTRQYEQLDEKMQARLAAFYAPFNDKLFEML 331
            V  +L      ++    L  G K++QTRRSI+LESE G RPCPS++I+GAQK GTTSLYEYLCQHPLVLRA RRETHYLD RWRREE LTW +HR+TY +FF+     EN S + GES+PSY+L+SD+V+PRVR+LAP AK+LV+LRCPVARAYSQ+QM+  T+ EG+ EQKKARG+ W GKSFEEVVE E+++LE   V P M Y+EFK  +L+SRPLGHGSHSLLGRGLYALQLQPW+  FG D  QLMV+F E+M +  A Q Q+GKVF FLGLPPH IIDT AK+TR Y  +DE+ +ARL+AFYAPFN +LF++L
Sbjct:  270 VHLILDYLEKDSIERSILPPGAKLHQTRRSIDLESEHGSRPCPSFLILGAQKSGTTSLYEYLCQHPLVLRARRRETHYLDWRWRREEHLTWEDHRETYLRFFHAALLNENPSCMTGESTPSYLLHSDIVLPRVRKLAPTAKLLVILRCPVARAYSQYQMV--TDPEGSVEQKKARGSHWLGKSFEEVVEAEMQDLERHRVHPTMNYQEFKDGYLSSRPLGHGSHSLLGRGLYALQLQPWLEAFGRD--QLMVMFMEDMASHNAVQAQLGKVFDFLGLPPHSIIDTHAKNTRAYTPMDERTKARLSAFYAPFNQQLFQIL 584
The following BLAST results are available for this feature:
BLAST of NO04G02260.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
10020030040050060070080090010001100Expect = 9.60e-113 / Id = 64.89SequenceEWM28634.1
Match NameE-valueIdentityDescription
EWM28634.19.600e-11364.89sulfotransferase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G02260NO04G02260Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G02260.1NO04G02260.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G02260.1.cds1NO04G02260.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G02260.1 ID=NO04G02260.1|Name=NO04G02260.1|organism=Nannochloropsis oceanica|type=mRNA|length=1140bp
ATGTTCTTGGTCCTCATAGGCGTCGCAGCCACTGTCCAATTTCTTCTCCC
CATGAGCGTCGCAGCCACTCTTCATAACATATATCTCTCGCATGGAACCA
AGATCAACCAAACCCGCCGCTCGATCAACCTGGAGTCGGAACGAGGAATA
CGTCCCTGCCCTAGTTACATCATTATAGGCGCACAGAAGTGTGGAACCAC
GTCCTTGTATGAATATCTGTGTCAGCATCCCTTGGTGTTGAGGGCAAACA
GGCGGGAGACTCATTACCTGGATCGGCGGTGGCGGAGGGAGGAAGGGTTG
ACTTGGCGGGAGCACCGGGACACGTATCACAAGTTTTTCAACAAGACGTT
TCCATACGAGAACTCATCACGCATAATTGGGGAATCATCGCCGAGCTATA
TGTTGTATAGCGACGTGGTGGTGCCGAGGGTAAGGGAGCTGGCGCCCGAG
GCCAAGATGCTGGTGATGCTCCGTTGTCCTGTGGCGAGGGCCTACAGTCA
GTTCCAGATGCTCATCGATACGGAAGGTGAAGGGACCCCAGAGCAGAAAA
AAGCTAGGGGAACGCTCTGGAAAGGGAAGTCGTTCGAGGAAGTGGTCGAG
AAGGAGTTGGAGGAGCTAGAGGCATGCGGAGTGACGCCGGATATGACGTA
CGAAGAGTTTAAGACACGGTTTTTAGCTTCGAGACCACTTGGGCATGGCA
GCCATTCGTTGCTAGGGAGAGGGCTGTATGCCTTGCAGTTGCAGCCGTGG
ATGGCTGAATTTGGGGGAGACAAGGGTCAGTTGATGGTATTGTTTACCGA
GGAGATGAGGACGGGGGAGGCGGCGCAGACACAGGTCGGCAAGGTGTTTG
CGTTCTTGGGGCTGCCTCCTCATGACATAATTGATACAGATGCCAAGCAT
ACTAGGCAGTACGAACAGTTGGACGAAAAAATGCAAGCGAGGTTGGCAGC
ATTTTACGCGCCGTTTAATGACAAGTTGTTTGAGATGTTGGCGCGACCGA
GGGGGATGGCGGGGTGGGCGGGGATGAAAGAGGAGGGAGGGGTTCGCAAT
GGACAGGTACTGTCCGTAGACGAGGCGAAGTCGGAGCAGCTTCGTACAAA
TGTAAGGACTGAACAAAATATGCGGCGAAAGCGGGAATAA
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protein sequence of NO04G02260.1

>NO04G02260.1-protein ID=NO04G02260.1-protein|Name=NO04G02260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=380bp
MFLVLIGVAATVQFLLPMSVAATLHNIYLSHGTKINQTRRSINLESERGI
RPCPSYIIIGAQKCGTTSLYEYLCQHPLVLRANRRETHYLDRRWRREEGL
TWREHRDTYHKFFNKTFPYENSSRIIGESSPSYMLYSDVVVPRVRELAPE
AKMLVMLRCPVARAYSQFQMLIDTEGEGTPEQKKARGTLWKGKSFEEVVE
KELEELEACGVTPDMTYEEFKTRFLASRPLGHGSHSLLGRGLYALQLQPW
MAEFGGDKGQLMVLFTEEMRTGEAAQTQVGKVFAFLGLPPHDIIDTDAKH
TRQYEQLDEKMQARLAAFYAPFNDKLFEMLARPRGMAGWAGMKEEGGVRN
GQVLSVDEAKSEQLRTNVRTEQNMRRKRE*
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mRNA from alignment at chr4:644610..645749+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G02260.1 ID=NO04G02260.1|Name=NO04G02260.1|organism=Nannochloropsis oceanica|type=mRNA|length=1140bp|location=Sequence derived from alignment at chr4:644610..645749+ (Nannochloropsis oceanica)
ATGTTCTTGGTCCTCATAGGCGTCGCAGCCACTGTCCAATTTCTTCTCCC
CATGAGCGTCGCAGCCACTCTTCATAACATATATCTCTCGCATGGAACCA
AGATCAACCAAACCCGCCGCTCGATCAACCTGGAGTCGGAACGAGGAATA
CGTCCCTGCCCTAGTTACATCATTATAGGCGCACAGAAGTGTGGAACCAC
GTCCTTGTATGAATATCTGTGTCAGCATCCCTTGGTGTTGAGGGCAAACA
GGCGGGAGACTCATTACCTGGATCGGCGGTGGCGGAGGGAGGAAGGGTTG
ACTTGGCGGGAGCACCGGGACACGTATCACAAGTTTTTCAACAAGACGTT
TCCATACGAGAACTCATCACGCATAATTGGGGAATCATCGCCGAGCTATA
TGTTGTATAGCGACGTGGTGGTGCCGAGGGTAAGGGAGCTGGCGCCCGAG
GCCAAGATGCTGGTGATGCTCCGTTGTCCTGTGGCGAGGGCCTACAGTCA
GTTCCAGATGCTCATCGATACGGAAGGTGAAGGGACCCCAGAGCAGAAAA
AAGCTAGGGGAACGCTCTGGAAAGGGAAGTCGTTCGAGGAAGTGGTCGAG
AAGGAGTTGGAGGAGCTAGAGGCATGCGGAGTGACGCCGGATATGACGTA
CGAAGAGTTTAAGACACGGTTTTTAGCTTCGAGACCACTTGGGCATGGCA
GCCATTCGTTGCTAGGGAGAGGGCTGTATGCCTTGCAGTTGCAGCCGTGG
ATGGCTGAATTTGGGGGAGACAAGGGTCAGTTGATGGTATTGTTTACCGA
GGAGATGAGGACGGGGGAGGCGGCGCAGACACAGGTCGGCAAGGTGTTTG
CGTTCTTGGGGCTGCCTCCTCATGACATAATTGATACAGATGCCAAGCAT
ACTAGGCAGTACGAACAGTTGGACGAAAAAATGCAAGCGAGGTTGGCAGC
ATTTTACGCGCCGTTTAATGACAAGTTGTTTGAGATGTTGGCGCGACCGA
GGGGGATGGCGGGGTGGGCGGGGATGAAAGAGGAGGGAGGGGTTCGCAAT
GGACAGGTACTGTCCGTAGACGAGGCGAAGTCGGAGCAGCTTCGTACAAA
TGTAAGGACTGAACAAAATATGCGGCGAAAGCGGGAATAA
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Coding sequence (CDS) from alignment at chr4:644610..645749+

>NO04G02260.1 ID=NO04G02260.1|Name=NO04G02260.1|organism=Nannochloropsis oceanica|type=CDS|length=1140bp|location=Sequence derived from alignment at chr4:644610..645749+ (Nannochloropsis oceanica)
ATGTTCTTGGTCCTCATAGGCGTCGCAGCCACTGTCCAATTTCTTCTCCC
CATGAGCGTCGCAGCCACTCTTCATAACATATATCTCTCGCATGGAACCA
AGATCAACCAAACCCGCCGCTCGATCAACCTGGAGTCGGAACGAGGAATA
CGTCCCTGCCCTAGTTACATCATTATAGGCGCACAGAAGTGTGGAACCAC
GTCCTTGTATGAATATCTGTGTCAGCATCCCTTGGTGTTGAGGGCAAACA
GGCGGGAGACTCATTACCTGGATCGGCGGTGGCGGAGGGAGGAAGGGTTG
ACTTGGCGGGAGCACCGGGACACGTATCACAAGTTTTTCAACAAGACGTT
TCCATACGAGAACTCATCACGCATAATTGGGGAATCATCGCCGAGCTATA
TGTTGTATAGCGACGTGGTGGTGCCGAGGGTAAGGGAGCTGGCGCCCGAG
GCCAAGATGCTGGTGATGCTCCGTTGTCCTGTGGCGAGGGCCTACAGTCA
GTTCCAGATGCTCATCGATACGGAAGGTGAAGGGACCCCAGAGCAGAAAA
AAGCTAGGGGAACGCTCTGGAAAGGGAAGTCGTTCGAGGAAGTGGTCGAG
AAGGAGTTGGAGGAGCTAGAGGCATGCGGAGTGACGCCGGATATGACGTA
CGAAGAGTTTAAGACACGGTTTTTAGCTTCGAGACCACTTGGGCATGGCA
GCCATTCGTTGCTAGGGAGAGGGCTGTATGCCTTGCAGTTGCAGCCGTGG
ATGGCTGAATTTGGGGGAGACAAGGGTCAGTTGATGGTATTGTTTACCGA
GGAGATGAGGACGGGGGAGGCGGCGCAGACACAGGTCGGCAAGGTGTTTG
CGTTCTTGGGGCTGCCTCCTCATGACATAATTGATACAGATGCCAAGCAT
ACTAGGCAGTACGAACAGTTGGACGAAAAAATGCAAGCGAGGTTGGCAGC
ATTTTACGCGCCGTTTAATGACAAGTTGTTTGAGATGTTGGCGCGACCGA
GGGGGATGGCGGGGTGGGCGGGGATGAAAGAGGAGGGAGGGGTTCGCAAT
GGACAGGTACTGTCCGTAGACGAGGCGAAGTCGGAGCAGCTTCGTACAAA
TGTAAGGACTGAACAAAATATGCGGCGAAAGCGGGAATAA
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Synonyms
Publications