Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr4 genome chr4:601516..607209 +
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G02090.1 vs.
Match: XP_005854622.1 (snf2 superfamily rad5 protein, partial [Nannochloropsis gaditana CCMP526]; EKU21736.1 snf2 superfamily rad5 protein, partial [Nannochloropsis gaditana CCMP526])
HSP 1 Score: 337.0 bits (863), Expect = 3.700e-88
Identity = 175/313 (55.91%), Postives = 213/313 (68.05%), Query Frame = 0
Query: 738 VVPATLLSQWLVEIQKTTHPGAVDAVVFIGVGKASFGSWSLRAVTEEGWVGDAFKSWRDLSVGDVVWAPVCRLEGLEETETVAAAAAAAAAAAGAGGAGGEPSEAHKHKVRQQYYRARILKFSPCSYSSPRIELEYLYTHQAVGQADVVLTTYDTLRNHRGGRWLRQLHWHRVILDECQEIRTSTSMIAKLCSSLMATHRWMVSGTPLFVSIDDLHGELQFLKVSPFSLQNDGFWEAKIGQPWKKRSEGEVGQQALILLRLLISVCMMRHSKGQVYVAGGRPIVTMPERSVTWVPVEGMSGSERFCYGYLEVL 1051
VVP TLL+QW++E++KTT GA++A+VF G K + LR ++ EGWVG S +L VG++VWAPVC L E + A A A++ + + ++R+ Y RA++LK + +EL Y Y V AD+V+TTYD LRN GG LR +HWHRVILDECQEIRTSTS IAKLCS L ATHRWMVSGTPLF S+DDL GELQFL VSPFSL NDGFWEAK+G PW++R E AL LL LL+SVCMMRHSKGQVY G P+V MP R++TW PVEG S SE+FCY YLEVL
Sbjct: 1 VVPGTLLNQWMMEVRKTTEAGALEALVFRGNVKVTKSLRELRRISREGWVGSFIPSAAELPVGELVWAPVC-LTPDRENQGSARRGTAGPASSSPSHPPASLRDPDRRRLRESYQRAKVLKVMEGPLGAT-VELRYWYERNEVWDADLVITTYDVLRNANGGPMLRHVHWHRVILDECQEIRTSTSAIAKLCSVLHATHRWMVSGTPLFASVDDLFGELQFLAVSPFSLANDGFWEAKVGGPWRRREES-----ALRLLHLLVSVCMMRHSKGQVYACTGSPLVAMPTRTITWQPVEGSSVSEQFCYAYLEVL 306
The following BLAST results are available for this feature:
BLAST of NO04G02090.1 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
500 1000 1500 2000 2500 3000 3500 4000 4500 5000 5500 Expect = 3.70e-88 / Id = 55.91 Sequence XP_005854622.1
Match Name E-value Identity Description
XP_005854622.1 3.700e-88 55.91 snf2 superfamily rad5 protein, partial [Nannochlor... [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO04G02090.1 ID=NO04G02090.1|Name=NO04G02090.1|organism=Nannochloropsis oceanica|type=mRNA|length=5694bp back to top protein sequence of NO04G02090.1
>NO04G02090.1-protein ID=NO04G02090.1-protein|Name=NO04G02090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1898bp back to top mRNA from alignment at chr4:601516..607209+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G02090.1 ID=NO04G02090.1|Name=NO04G02090.1|organism=Nannochloropsis oceanica|type=mRNA|length=5694bp|location=Sequence derived from alignment at chr4:601516..607209+ (Nannochloropsis oceanica)ATGCCTTTGCGTGGACGTGAAGAGGAGGAGCAGGAGGAACAAGGAGGAGC
AGGAGAAGGAGGAGAAGGAGGAGAAGGAAGAGAAGGAAGAGAAGGAGGGG
GAGCAGGAGGAACAGTGGCAGAAGGAGCAGGGGCGGGAACAGGCGCTGAA
TCAGAAGCAGAAAGAGGAGAAGGAGGAGAAAGAGAAAGAGGAGCAAGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGATGGAGGAAAAGGGGAGACAA
AACCCTTACCGTCCTGTGCCGCAGCCTCTGTAAAATTACGCCCCCCCCGC
AAGAAGTCCAAGCGCGCCGTGGAGGCGGAGCCGCAGTGGAAAGCGGTCCC
TGCATGGAGAGCAGATGCTGCAGCTTCTGCTACAGCTGCGGCCGTAGCAG
CCGCCGCTCCTCTTCTCCCTCCCCTTGGTGCCTCTTCCACCAACACCATC
ACGCGAGCCCAGCCTCCCGCCGCGGCTCGCGTCCACTTTGAGAATTTCAA
CATGCCCGGCCCCCCCTCAACGATTGACATGGCCACAGGCCGTGCTTGCA
CCTCCCCAGGCACGAAGTGGCTGGCGAAGACTGCAGCGAAGGAAGCCGTG
TTGGGTGCGAGTAACGAGGCACGATTGATAGGGACAGTTGCAGTGATGGT
ACAGGTCTCCCCGAGTGTGTTGCAGGGATTAATAGCGGCTAAAAAGGTGG
AAACAGTGACGAGGGTCTTTCAGAATCCAAAGAGGAAAATGGAGATGAGC
TGGGAGAAATGCAGTGGAGAGTTCAGCACGCCCCTGGGCCAGCTGCCTTT
GTCACGTTTGCTCCTTGCGTTGGATAATGACAAGGTCCGGATACCGATAA
AGGCGCATGCGGACATGTTGGAGACGTTGTGGTCGTTGCAAAATCCCCAG
TCTTCTCCATGGAAGCGACCGCTCCTCCGTCTTTGCACCACACTGACCCC
GCACCCCTCCGCCCTCCTTTTGGACGGCAGGAGCAGCAGCAAGGAGCAAG
TCAACGTCCACATCACCTTCCACGTCTTTGTCGGCCGGCTGATTTTTGAG
TTGATCGCCAACACGGATACTCAAGCTTTGATGGCAGGCTTAACGCCGGT
AGGGCACGTGATTCCCGCAGCCCAAGTTCCTCCTTCCACCAACACGTTTC
GCAAGAGCCCTGCCCCGGCTGCAGCTGCTGCTACTGCTGCTGCTTCTGAT
GCTGTTCAAGCTGTTGGTGTTCTAGAGAGTGGTGATGGTGGTGGTGGTGG
TGGTGGAAAAGGAGGAAAAGGAGGAAAAGGAGGACAAGGAGGACAAGGAA
AAGGGGTGGGGGGGATGAGAAAGGAGACGTCGAGTCCGTGGGATGTGGGC
GACAAGAGCGACGAGCAGGAGAGTGAGGAGGAGGACGAAGAAGGGGATGA
GGTTCAGATAATAGCGGACTCAGATGATGATGATTCAGTGATTTTCATTC
CGCCGGACCAGAACAAGAAGAAGACGAAGCAGCAGCAGCAGCAGCAGCCG
CAGACAGGAGGACGAAAGAGCAAGGGAACAGGGAAGGGAAAAGCTGTCGT
CACCAAATCCGGATACAACAAGCAGAGAAAGTTCTCCCTCGGCCCTACCA
CCCTCCCCAACAACCCCCCCTCCTCCACTGCTGCACGCGCTCCCGCTCCC
TCTGCGCCAGCCAGCCTGTGGCAAGTCCAACGCGACTACCTGTTTTCATT
GCCCGGCCTGCTGCACCAAGCCGAGTCTTGCGGCTACCCCATCCGTGACG
CCCAACCACCGGGGCTAGCGGTGCAGCTGTTTGACTTCCAACGCTCTACG
TTGCAATGGATGCTGGACCGGGAAAGAGGACCGGGATTGAATCAATACTT
TTGGGAAAAGCGGTTGTGGAGCAAAGCGAGGGGGGCTGGGGAAGGATGGA
AAGAGGAAGGGGAGGATGACGGAGAGGGTTTTTATTATTTTCCTGATGCG
GGGGAGTTGCGCCTACAACGGCCGCCGCATTGCACAGGGGGCTTGCTTTG
TGAAGAAATGGGGCTGGGGAAAACACTGGAATGTCTATCGTTGGTGCTGG
CGAATCCCTTGAAAGAGAAGGAGACTAAAGGGAGACAAGCAGCAGCAGCA
GCAGCGAGGACGACGGCGGCCATGATGGTGGGTAAAAAACATGGGGAGAA
GGGGGAGGAGGAGTGGGAGGGATCGACGACGATGTGTGGCAAAGTGAAGG
CCTCTTTGATAGTGGTTCCGGCCACGTTGTTGAGCCAGTGGTTGGTGGAG
ATTCAGAAAACGACACATCCGGGGGCGGTTGACGCAGTAGTCTTTATTGG
GGTTGGAAAGGCGTCGTTTGGCTCGTGGTCGTTGAGGGCTGTGACGGAGG
AAGGGTGGGTGGGAGATGCCTTCAAGTCGTGGCGAGACTTGAGTGTAGGG
GATGTGGTCTGGGCGCCTGTTTGTAGGCTGGAAGGATTGGAGGAGACAGA
AACAGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGAGCAGGAG
GAGCAGGAGGGGAACCCAGCGAAGCACACAAACACAAAGTCCGACAGCAG
TACTACCGGGCCCGCATCCTTAAATTTTCTCCCTGTAGTTATAGCAGCCC
CCGCATCGAGCTCGAATACCTCTACACCCACCAGGCTGTCGGTCAAGCCG
ACGTCGTCCTTACCACTTATGACACCCTTCGAAACCATCGCGGGGGGCGC
TGGCTCCGGCAACTGCACTGGCACCGTGTCATTTTGGACGAATGTCAGGA
GATTCGGACCTCCACATCCATGATTGCCAAGCTATGTTCGTCACTCATGG
CCACTCACCGATGGATGGTGAGTGGTACGCCGCTCTTTGTCTCCATCGAC
GATCTCCATGGTGAGTTGCAGTTCCTTAAAGTGTCGCCTTTCTCGTTGCA
GAACGACGGGTTTTGGGAAGCCAAGATAGGGCAGCCGTGGAAGAAACGGT
CGGAGGGGGAAGTGGGGCAGCAGGCCTTGATATTGTTAAGGTTGTTGATT
TCGGTGTGTATGATGCGGCATTCCAAGGGCCAGGTGTATGTGGCGGGAGG
GCGGCCCATTGTGACCATGCCTGAGCGATCGGTCACGTGGGTACCGGTAG
AGGGCATGAGTGGCAGTGAGAGGTTTTGTTACGGATACTTGGAGGTGTTG
GCCGCGGAGGAGTGTCGGAGGCTGGTCGAGCAGGCGTTGCATGCCGCGGC
GGTTGGGGGAGGAGAAGAAGCGGGAGGAGTGGGAGGAGAAGGAGGAGGGA
CAGAAGGAGGAGGAGCAGGAGAAGAAAGAGGGCTGTTGCACTCAGCGGTA
GTGGGTGCGGTAGCTGCTGCTGCTGCTGATAGTGGTGGGGCTGGCGGTGG
AGAAGGAGGAGGGGCTGTGTCGCAACGTGTATTGACGAGAGAGGAGCAAG
CGCAGGTGCTCGCCCAAGCAATCCAGCACGGAGGCGAAGGACGTAGGACT
GGAAGAGGTCGGGGAGGAGCAGCAGTTGGTGCACACGCCAAGTTGAAAGC
GTTGTTATTTATGTTGCAGCGTGTCCTTCTCCACCCTTCCCTCGTATCCT
TGGCTCAGCTCGATTCGATCAAACGGTCTTTGCAGATTCAACAGAGACTT
CTAGCCGTCTCTTTGAATGCGGAGAAGAACAAGGATAGCATGATCCCGAT
ATTGGGGATTGAAGAGATGTTGACCAGATTGCAGGGGAGGAATGCGCAGG
GCGGGCTGACGCGAGACGTGAATCGAACATGGGCATTACATGGGTATCAG
AACGAGGAGGCGAGGGAGAAGTTGGAGGGATTGACGCTGATGGAACTGAG
GGCGAGGGTGGCGAAGGAGGGGCTGCCCTTGCCGATTGCATGGACGCAAT
TGCCGTTGCGTGCGGCGGTGGGGAAGGGGGAAGAGAGGATGGAGGTCTGG
ACTTACTATGAGGAGGAGAGGGGAGGGAGAGAGGGGGGGAAAGGGGGAAG
AAAGATGGTGGACGAGTTGTTGGCTGTGGGTGATGTGATTCGCATCGGAA
TGAACGATGAGGATTACGAAAATGGAGTGAAGGGGTTGGCGGTCGAGGGA
GGGAGGGAAGGAGGGGGGAAGGGAGGGCAGCTTGAGAATGGGGTGACAGG
ACTGATTGTCCGAGAGGGCGATGCGGAGGGAATATTAGAGAGGGGGGAAA
GTGGGCAGGTGATATTGGAAGCGGCTTGGGCGAACGAGGAAAATCCAAAA
ACGGTCATATATAAAAGGGGCCCAGCCACGAGAAAGAAGGCTTACGCTGA
TTTGTTAATGGCGAAAGAGAAGGAGATGAAGGGGATGACGGATCAGCTGC
ACGAAGCTGGATTTGCGAGCATTTTTGCGGTATTGGAGGGGAAGGATTTG
AATTGTCCGGTGTGTTTGTGCACAATCGGTGAGCCCACCGTGACGCAGTG
CTGTCATGTGTATTGCCGCACGTGTATTTTGGCGCAGCTCGAGGGGGCCG
GGGGAGGGGGGAACGTGGTGTCAAGGTGTGCGGTGTGTCGGAAACCGGTG
AGTCTGAAAACATTAATGCAGTTGGATACGACCTCGGTGGAACGATATGA
GGCGTTGGAGGAGTGGGCAGGTGGAAGAGAGGTAGGGGGTGGGGGGGGGG
GGGGGGAGGAAGAGGAGGAAAAGGGGGAGATGGTGGGAAATGAACGATCG
AAGGAGGCGATGGAGGGGAAAAAGAGGAGGATGACGAATGGAACTGACGG
GGAGGGGAGAGAGAGAAGAAAACAAGGAGGAGGAGAAGAGGAAGAAGAAG
GAGGAGGAAGGGCAGATGACGGGGGGGGGGAACTCAGTCCTGAAGAGCTC
CTTCGTCTCGCCGAAGGTGGTAAAGGTGGCTCCTCCTCCTCCTCCTCCTC
CTCCTTCTCCTTCTCCTCTGCCTCTACGTCTGCAGCAGTGGCTGCAGCAG
CTACAGCAGCAACTGCATACACGGCCTTGAAAATTCCACACGTCGACTAT
CCTCCTGTGGCAGATGAGGATACCTTGCGCGCCATCCCCCAACCGTTCCA
TTTTGCGCGTGACCGCAGCCTGCCCTCTCTGGACCCGGCCTTCCTCGCCC
ATCACCATAACACCAACATGGTGCCCTCGGCCAAGATGAGGACATTGATC
GGGATCCTGAGAGAGACCCGTCAAAGCGACCCCAGTGGTAAGTTTGTTGT
GTTTTCTCAATTTCCCTTTGGGACGATTGCGCCGTGCTTGGAGCAGGCAG
GGTTTCCCTGCGTGAGTGTGACGAGTCAGTGTCGCGCCGAACAACGACAG
CAGGCCGTAGGAGCGTTCACGAACAAAGCGGAGGTAAAAGTCATCTTGGT
AGGGATGGGGGTGGGAGCGGCGGGGCTGACACTGACGGCAGCGAAAACGT
TGATTTTGCTGGAACCAAGTCATAATCTGGCCGATGAGGCGCAAGCCATG
AGTAGGATTCATCGAATTGGGCAAGAGGCGAAGTGTGTGAAAATTTGTGT
GCTATTTACACGGGGAACAATAGAGGAGAGGATGCTGAAGATGAGGTTGG
ACGAGGGGGGGGCCGTAGCTTTGCATCAAGGCGGAAGGGGAGGAGGAGGT
GAGGGAGGGGGGGAAGAAGGGGCAGCGTTGTCGGTCGCAGCCACGGGGGG
AGGGGAGAAGAGCTTTCAGTTTTCGCTGGCAAGTCTCCAGAGGCTGTTGG
GGTTGGATGACGGGGTGGAAAGGAGGGAGGAAAACCATGATTAG back to top Coding sequence (CDS) from alignment at chr4:601516..607209+
>NO04G02090.1 ID=NO04G02090.1|Name=NO04G02090.1|organism=Nannochloropsis oceanica|type=CDS|length=5694bp|location=Sequence derived from alignment at chr4:601516..607209+ (Nannochloropsis oceanica) back to top