NO04G02050.1, NO04G02050.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G02050.1
Unique NameNO04G02050.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length372
Alignment locationchr4:593902..594341 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:593902..594341 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G02050.1 vs.
Match: EWM28527.1 (Transcription factor IIS [Nannochloropsis gaditana])

HSP 1 Score: 68.6 bits (166), Expect = 1.600e-8
Identity = 50/122 (40.98%), Postives = 63/122 (51.64%), Query Frame = 0 
Query:    1 MLRPAEAA-AKQKKKKRLLAAGGGGNNKVKLLKKGTGFSSFSSSSLPGGIKKGTAGGAGFRSPPTVPLSSSSITNSPNIHDEDTWEGCWQGDRRHEAVRDGVTWLLRQATSTSRGGERKGMK 122
            ML P EAA  K KKKKRLL     G+   K+ K+     S+ S+S   G+KK   G    R P +    +          D DTWE CWQG  R EAVRDGV WLL+ A S S   + +G++
Sbjct:    1 MLHPVEAAPGKLKKKKRLLKGDKWGS---KVSKRAAPSPSWPSTS---GLKKEKGGLLAGRGPLSSGKVAGPSQGKSEAFDADTWEACWQGIERREAVRDGVAWLLKHAASNSNSEKCEGLR 116
The following BLAST results are available for this feature:
BLAST of NO04G02050.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28527.11.600e-840.98Transcription factor IIS [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G02050NO04G02050Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G02050.1NO04G02050.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G02050.1.cds1NO04G02050.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G02050.1.cds2NO04G02050.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G02050.1 ID=NO04G02050.1|Name=NO04G02050.1|organism=Nannochloropsis oceanica|type=mRNA|length=372bp
ATGCTTCGCCCAGCGGAAGCCGCGGCCAAGCAGAAGAAAAAGAAGCGCTT
ACTGGCCGCTGGCGGAGGGGGTAACAACAAAGTCAAGCTCCTCAAAAAGG
GCACGGGTTTTTCATCATTTTCGTCATCGTCCTTACCGGGGGGAATTAAG
AAGGGGACGGCTGGCGGAGCCGGCTTTCGGAGTCCGCCAACCGTTCCCCT
TTCCTCCTCCAGCATTACCAACTCCCCCAATATCCACGACGAAGATACCT
GGGAAGGCTGCTGGCAAGGTGACCGACGACATGAGGCCGTGCGAGATGGG
GTTACGTGGTTGTTGAGGCAAGCAACATCCACCAGCAGGGGGGGGGAGCG
GAAGGGGATGAAAGAGGGTTAA
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protein sequence of NO04G02050.1

>NO04G02050.1-protein ID=NO04G02050.1-protein|Name=NO04G02050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=124bp
MLRPAEAAAKQKKKKRLLAAGGGGNNKVKLLKKGTGFSSFSSSSLPGGIK
KGTAGGAGFRSPPTVPLSSSSITNSPNIHDEDTWEGCWQGDRRHEAVRDG
VTWLLRQATSTSRGGERKGMKEG*
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mRNA from alignment at chr4:593902..594341+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G02050.1 ID=NO04G02050.1|Name=NO04G02050.1|organism=Nannochloropsis oceanica|type=mRNA|length=440bp|location=Sequence derived from alignment at chr4:593902..594341+ (Nannochloropsis oceanica)
ATGCTTCGCCCAGCGGAAGCCGCGGCCAAGCAGAAGAAAAAGAAGCGCTT
ACTGGCCGCTGGCGGAGGGGTAAGCTTGTCATCTCCCTCACGACCGAGTC
CACTCCTCCACTCATACATACCCTGCCACCTCCACAGGGTAACAACAAAG
TCAAGCTCCTCAAAAAGGGCACGGGTTTTTCATCATTTTCGTCATCGTCC
TTACCGGGGGGAATTAAGAAGGGGACGGCTGGCGGAGCCGGCTTTCGGAG
TCCGCCAACCGTTCCCCTTTCCTCCTCCAGCATTACCAACTCCCCCAATA
TCCACGACGAAGATACCTGGGAAGGCTGCTGGCAAGGTGACCGACGACAT
GAGGCCGTGCGAGATGGGGTTACGTGGTTGTTGAGGCAAGCAACATCCAC
CAGCAGGGGGGGGGAGCGGAAGGGGATGAAAGAGGGTTAA
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Coding sequence (CDS) from alignment at chr4:593902..594341+

>NO04G02050.1 ID=NO04G02050.1|Name=NO04G02050.1|organism=Nannochloropsis oceanica|type=CDS|length=372bp|location=Sequence derived from alignment at chr4:593902..594341+ (Nannochloropsis oceanica)
ATGCTTCGCCCAGCGGAAGCCGCGGCCAAGCAGAAGAAAAAGAAGCGCTT
ACTGGCCGCTGGCGGAGGGGGTAACAACAAAGTCAAGCTCCTCAAAAAGG
GCACGGGTTTTTCATCATTTTCGTCATCGTCCTTACCGGGGGGAATTAAG
AAGGGGACGGCTGGCGGAGCCGGCTTTCGGAGTCCGCCAACCGTTCCCCT
TTCCTCCTCCAGCATTACCAACTCCCCCAATATCCACGACGAAGATACCT
GGGAAGGCTGCTGGCAAGGTGACCGACGACATGAGGCCGTGCGAGATGGG
GTTACGTGGTTGTTGAGGCAAGCAACATCCACCAGCAGGGGGGGGGAGCG
GAAGGGGATGAAAGAGGGTTAA
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Synonyms
Publications