NO04G01960.1, NO04G01960.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G01960.1
Unique NameNO04G01960.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1653
Alignment locationchr4:575763..577765 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:575763..577765 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G01960.1 vs.
Match: EWM28567.1 (Oxidoreductase [Nannochloropsis gaditana])

HSP 1 Score: 598.6 bits (1542), Expect = 1.200e-167
Identity = 290/344 (84.30%), Postives = 315/344 (91.57%), Query Frame = 0 
Query:    2 ALQRFKSGDAVTVFTPDDTHFDIALACVQRGLHVLVTKPVVKTLAEHRLLKEAAEKAGVLVMVEVHKRFDPIYLDAKDKIQELGDFSYMYSYMSQPKHQLDTFRAWAGKASDISYYLNSHHTDFHEWAVQGRSRPIRVTALASTGVATSQYKIDTEDTITLSVQWQNRGPNPSLGTGLYTSSWVAPKSDVHSQQRFFYMGQGGEVNVDQAHRGYTMASDSYGGGGFKSVNPLFMKYTPSKGKFVGQRGYGYMSFEAFVDAVAEIEGGRARVEDFDSSLATIGTTALTTAILEAGRRSLDAGGRGMEIVYGEEADKAWAMPATVGEGGKEGGMHPFPTDIKPVVF 346
            AL++FK GDA T+FTPDDTHFDIALACV+RGLHVLVTKPVVKTLAEHR LK+AAE +GVLVMVEVHKRFDPIYLDAKDKIQ LG FSYMYSYMSQPKHQLDTFRAWAGK SDISYYLNSHHTDFHEWA+QGRSRP+RV+ALASTGVAT QY++DTEDTITLSVQWQNRGP+PSLGTGLYTSSWVAPKSDVHSQQRFFYMG GGEVNVDQAHRGYT+ASD  GGGGFKSVNPLFMKYTP+ G+F GQRGYGY+SFEAFVDAV +I+ G+A V DFD++LATIGTTALTTAILEAGRRSLDAGGR MEIVYGEEAD+ W+ P    EGG+E   HPFP DI+PV F
Sbjct:  105 ALEKFKPGDAATIFTPDDTHFDIALACVKRGLHVLVTKPVVKTLAEHRALKDAAEASGVLVMVEVHKRFDPIYLDAKDKIQALGPFSYMYSYMSQPKHQLDTFRAWAGKGSDISYYLNSHHTDFHEWAMQGRSRPVRVSALASTGVATCQYQMDTEDTITLSVQWQNRGPSPSLGTGLYTSSWVAPKSDVHSQQRFFYMGHGGEVNVDQAHRGYTLASDELGGGGFKSVNPLFMKYTPTDGRFAGQRGYGYLSFEAFVDAVVDIQSGKASVGDFDAALATIGTTALTTAILEAGRRSLDAGGRPMEIVYGEEADRTWSAP----EGGEEN--HPFPIDIRPVEF 442
The following BLAST results are available for this feature:
BLAST of NO04G01960.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
2004006008001000120014001600Expect = 1.20e-167 / Id = 84.30SequenceEWM28567.1
Match NameE-valueIdentityDescription
EWM28567.11.200e-16784.30Oxidoreductase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G01960NO04G01960Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G01960.1NO04G01960.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G01960.1.cds1NO04G01960.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G01960.1 ID=NO04G01960.1|Name=NO04G01960.1|organism=Nannochloropsis oceanica|type=mRNA|length=1653bp
CCCGCTTGGTCTTGCATTGCTTTTATTGTTTTGTTCTGGTCCTCACGGCA
CCTTTGTGATAGGGCTTCGTTGCAACAGCATCTCCTTGCCGGTGTGCAAC
CCTTTAAGTCGCTGCCCTCTCAGCCCCAACCACAGGCCTTTCCTCTTCTC
TTCATCTTTCCCATACACGTTATCATCATCTGCAGCAGCAACAGCACAGC
AGATCCCTTGTTCTCACAAACATGGCTGCATCAAGCCAAGTGAAGCCTGT
GGACATGTTGATGATCGGCACGGGCGAATACACCACCGGCTACGTCTACG
GTGAAGCCTCAGATTCAGACAAAAGTGCGGGTGTAGTAGCTCTTACCATG
TTTGATCTTCGCCGTCGGGGCAAGATCCCAAGGCATATGAAATGGCGCTT
CAAAGATTCAAATCGGGGGATGCCGTCACTGTCTTTACGCCTGACGACAC
GCATTTTGATATTGCCCTCGCGTGTGTCCAACGTGGGTTGCACGTGCTCG
TGACGAAGCCCGTCGTCAAAACCCTGGCGGAACATCGTCTGCTCAAGGAG
GCGGCAGAGAAGGCAGGGGTGTTGGTGATGGTCGAAGTACATAAACGCTT
CGATCCCATCTACCTCGATGCCAAGGACAAAATCCAAGAGCTAGGCGATT
TCTCTTACATGTACTCCTACATGTCCCAGCCCAAGCATCAACTCGATACC
TTCCGTGCCTGGGCAGGAAAAGCCTCTGATATCTCCTACTACCTCAACTC
CCACCACACTGATTTTCACGAATGGGCCGTGCAAGGACGGTCCCGCCCCA
TCCGCGTCACTGCCCTCGCTTCCACCGGCGTGGCTACAAGCCAATATAAA
ATCGACACAGAGGACACGATTACCCTGTCCGTGCAATGGCAGAACCGCGG
GCCAAACCCCAGTCTAGGCACGGGTCTCTATACTTCTTCGTGGGTGGCGC
CCAAGTCAGACGTGCATTCCCAGCAGAGGTTTTTTTACATGGGGCAGGGG
GGGGAGGTTAATGTTGACCAGGCCCACCGAGGGTACACAATGGCGAGTGA
TAGCTACGGAGGAGGGGGCTTTAAGAGTGTCAATCCTTTGTTCATGAAAT
ACACGCCCAGTAAAGGTAAATTTGTTGGGCAACGTGGGTATGGATATATG
AGTTTTGAGGCATTTGTGGATGCTGTAGCGGAGATAGAGGGGGGGAGGGC
GAGAGTGGAGGACTTTGACTCGAGCCTGGCGACGATTGGGACGACGGCCT
TGACCACAGCGATTTTGGAGGCAGGAAGACGCTCGTTGGATGCGGGGGGG
AGGGGGATGGAGATTGTGTATGGGGAGGAGGCGGATAAGGCATGGGCGAT
GCCGGCGACAGTGGGGGAGGGAGGGAAAGAGGGAGGTATGCACCCGTTCC
CGACGGATATAAAACCGGTAGTGTTTTAGAGGAAGGATAGGCGGGAGGAG
GGGCGGGAGAAAGGGGCACCCTAAAATCGAAACGAAGAAAAGAGAACAAG
AAAAGGCGGAATTGACAAATAATAAAATGGGGCAAATGGCGAGATGCAAC
CAACCAGCATGACGAGGGAAGGACAGTCGAAACAGTGCGTGCGAAAGAGA
ACAATGCAAACATGAGGGAGTTGAAAAAAGCACACAGCATTGCAAATAAG
TTC
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protein sequence of NO04G01960.1

>NO04G01960.1-protein ID=NO04G01960.1-protein|Name=NO04G01960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=346bp
MALQRFKSGDAVTVFTPDDTHFDIALACVQRGLHVLVTKPVVKTLAEHRL
LKEAAEKAGVLVMVEVHKRFDPIYLDAKDKIQELGDFSYMYSYMSQPKHQ
LDTFRAWAGKASDISYYLNSHHTDFHEWAVQGRSRPIRVTALASTGVATS
QYKIDTEDTITLSVQWQNRGPNPSLGTGLYTSSWVAPKSDVHSQQRFFYM
GQGGEVNVDQAHRGYTMASDSYGGGGFKSVNPLFMKYTPSKGKFVGQRGY
GYMSFEAFVDAVAEIEGGRARVEDFDSSLATIGTTALTTAILEAGRRSLD
AGGRGMEIVYGEEADKAWAMPATVGEGGKEGGMHPFPTDIKPVVF*
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mRNA from alignment at chr4:575763..577765-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G01960.1 ID=NO04G01960.1|Name=NO04G01960.1|organism=Nannochloropsis oceanica|type=mRNA|length=2003bp|location=Sequence derived from alignment at chr4:575763..577765- (Nannochloropsis oceanica)
CCCGCTTGGTCTTGCATTGCTTTTATTGTTTTGTTCTGGTCCTCACGGCA
CCTTTGTGATAGGGCTTCGTTGCAACAGCATCTCCTTGCCGGTGTGCAAC
CCTTTAAGTCGCTGCCCTCTCAGCCCCAACCACAGGCCTTTCCTCTTCTC
TTCATCTTTCCCATACACGTTATCATCATCTGCAGCAGCAACAGCACAGC
AGATCCCTTGTTCTCACAAACATGGCTGCATCAAGCCAAGTGAAGCCTGT
GGACATGTTGATGATCGGGTACGTGCAGCAGACTGTGGGTGGAGACGTGT
GCTTGACCCTACGGGGGTATGTGATGTTGTGTGAGAGTTGTGAGCTCTTC
ACTCTCGCTCTTTGCAGCACTTTCACCTGCATGCATGTCTTCATGTCAAT
GATGCGTGGAAAGGCTCGTCCAAGGTTGAACGATCTTGCACTCACGATCC
CTCGTCTCTTCCCCTTCTCTTCCTTGCCTCAGCACGGGCGAATACACCAC
CGGCTACGTCTACGGTGAAGCCTCAGATTCAGACAAAAGTGCGGGTGTAG
TAGCTCTTACCATGTTTGATCTTCGCCGTCGGGGCAAGGTGGGTAGGCTT
GGGCTCTGTGGGACAAATGGAAAAAAGTTCCCAGGAATCCGTGCGCATAT
GGACCGTGCCATCGGACAGACTTACAGTGGGCTTGACATGACAATGGACA
CTTTTCCGGCCGATGACGAGACAGATCCCAAGGCATATGAAATGGCGCTT
CAAAGATTCAAATCGGGGGATGCCGTCACTGTCTTTACGCCTGACGACAC
GCATTTTGATATTGCCCTCGCGTGTGTCCAACGTGGGTTGCACGTGCTCG
TGACGAAGCCCGTCGTCAAAACCCTGGCGGAACATCGTCTGCTCAAGGAG
GCGGCAGAGAAGGCAGGGGTGTTGGTGATGGTCGAAGTACATAAACGCTT
CGATCCCATCTACCTCGATGCCAAGGACAAAATCCAAGAGCTAGGCGATT
TCTCTTACATGTACTCCTACATGTCCCAGCCCAAGCATCAACTCGATACC
TTCCGTGCCTGGGCAGGAAAAGCCTCTGATATCTCCTACTACCTCAACTC
CCACCACACTGATTTTCACGAATGGGCCGTGCAAGGACGGTCCCGCCCCA
TCCGCGTCACTGCCCTCGCTTCCACCGGCGTGGCTACAAGCCAATATAAA
ATCGACACAGAGGACACGATTACCCTGTCCGTGCAATGGCAGAACCGCGG
GCCAAACCCCAGTCTAGGCACGGGTCTCTATACTTCTTCGTGGGTGGCGC
CCAAGTCAGACGTGCATTCCCAGCAGAGGTTTTTTTACATGGGGCAGGGG
GGGGAGGTTAATGTTGACCAGGCCCACCGAGGGTACACAATGGCGAGTGA
TAGCTACGGAGGAGGGGGCTTTAAGAGTGTCAATCCTTTGTTCATGAAAT
ACACGCCCAGTAAAGGTAAATTTGTTGGGCAACGTGGGTATGGATATATG
AGTTTTGAGGCATTTGTGGATGCTGTAGCGGAGATAGAGGGGGGGAGGGC
GAGAGTGGAGGACTTTGACTCGAGCCTGGCGACGATTGGGACGACGGCCT
TGACCACAGCGATTTTGGAGGCAGGAAGACGCTCGTTGGATGCGGGGGGG
AGGGGGATGGAGATTGTGTATGGGGAGGAGGCGGATAAGGCATGGGCGAT
GCCGGCGACAGTGGGGGAGGGAGGGAAAGAGGGAGGTATGCACCCGTTCC
CGACGGATATAAAACCGGTAGTGTTTTAGAGGAAGGATAGGCGGGAGGAG
GGGCGGGAGAAAGGGGCACCCTAAAATCGAAACGAAGAAAAGAGAACAAG
AAAAGGCGGAATTGACAAATAATAAAATGGGGCAAATGGCGAGATGCAAC
CAACCAGCATGACGAGGGAAGGACAGTCGAAACAGTGCGTGCGAAAGAGA
ACAATGCAAACATGAGGGAGTTGAAAAAAGCACACAGCATTGCAAATAAG
TTC
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Coding sequence (CDS) from alignment at chr4:575763..577765-

>NO04G01960.1 ID=NO04G01960.1|Name=NO04G01960.1|organism=Nannochloropsis oceanica|type=CDS|length=1038bp|location=Sequence derived from alignment at chr4:575763..577765- (Nannochloropsis oceanica)
ATGGCGCTTCAAAGATTCAAATCGGGGGATGCCGTCACTGTCTTTACGCC
TGACGACACGCATTTTGATATTGCCCTCGCGTGTGTCCAACGTGGGTTGC
ACGTGCTCGTGACGAAGCCCGTCGTCAAAACCCTGGCGGAACATCGTCTG
CTCAAGGAGGCGGCAGAGAAGGCAGGGGTGTTGGTGATGGTCGAAGTACA
TAAACGCTTCGATCCCATCTACCTCGATGCCAAGGACAAAATCCAAGAGC
TAGGCGATTTCTCTTACATGTACTCCTACATGTCCCAGCCCAAGCATCAA
CTCGATACCTTCCGTGCCTGGGCAGGAAAAGCCTCTGATATCTCCTACTA
CCTCAACTCCCACCACACTGATTTTCACGAATGGGCCGTGCAAGGACGGT
CCCGCCCCATCCGCGTCACTGCCCTCGCTTCCACCGGCGTGGCTACAAGC
CAATATAAAATCGACACAGAGGACACGATTACCCTGTCCGTGCAATGGCA
GAACCGCGGGCCAAACCCCAGTCTAGGCACGGGTCTCTATACTTCTTCGT
GGGTGGCGCCCAAGTCAGACGTGCATTCCCAGCAGAGGTTTTTTTACATG
GGGCAGGGGGGGGAGGTTAATGTTGACCAGGCCCACCGAGGGTACACAAT
GGCGAGTGATAGCTACGGAGGAGGGGGCTTTAAGAGTGTCAATCCTTTGT
TCATGAAATACACGCCCAGTAAAGGTAAATTTGTTGGGCAACGTGGGTAT
GGATATATGAGTTTTGAGGCATTTGTGGATGCTGTAGCGGAGATAGAGGG
GGGGAGGGCGAGAGTGGAGGACTTTGACTCGAGCCTGGCGACGATTGGGA
CGACGGCCTTGACCACAGCGATTTTGGAGGCAGGAAGACGCTCGTTGGAT
GCGGGGGGGAGGGGGATGGAGATTGTGTATGGGGAGGAGGCGGATAAGGC
ATGGGCGATGCCGGCGACAGTGGGGGAGGGAGGGAAAGAGGGAGGTATGC
ACCCGTTCCCGACGGATATAAAACCGGTAGTGTTTTAG
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Synonyms
Publications