NO04G01800.1, NO04G01800.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G01800.1
Unique NameNO04G01800.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1606
Alignment locationchr4:527441..529264 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:527441..529264 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G01800.1 vs.
Match: EWM28555.1 (secreted salivary gland [Nannochloropsis gaditana])

HSP 1 Score: 331.3 bits (848), Expect = 3.200e-87
Identity = 177/302 (58.61%), Postives = 210/302 (69.54%), Query Frame = 0 
Query:    1 MHNLFTMV-GRASNWRSSPPSTSIGMNPSPAHVPSSPFAFAGGKCKAAARSLGWRSVYMFVSLLALLGASGGQSRLIEFVCKQLGGSNKCPPIQTCPVGEALFHKPHSKPTYDGCGTHGLKVSLSPTDFSSCCNLHDLCYGQCGRRKKECDDFFEACMLAQCQREHHVNSSSSSSSSSSSSHHSHSLQIQGGGHRQQQPMPQSKELKRCVRAAKLYYHAVYGLGCFAFRRAKAKHCECRPYQKGDKDKEKEEE---GGEGGKKSKTERINDIRGSLVAVMERAARADTPVAGVSHCKWEEFL 299
            MH+L T V  ++S + SS  S S   + + AH   S      GK KAA RSLGWRS+YMFVSLLALLGA+G QS+++EF+CKQLGGSNKCP + TCP GEAL HKPHSKP+YDGCGTHG+KVSLSPTDFSSCCNLHDLCYGQCG  KKECD++FE CM+AQC REHH+      S+SS  SHH               P  QSKEL+RCVRAA+LYYH VYG GCFA+R+A+ +HCEC P  +G++ +    E   GG GG+           G L A+MERAA+A TP AG  H KWEEFL
Sbjct:    1 MHHLHTSVEAKSSLFSSSRFSESTTSSLNTAH-SFSELGGPAGKHKAAVRSLGWRSIYMFVSLLALLGATGSQSKIVEFICKQLGGSNKCPAMPTCPAGEALRHKPHSKPSYDGCGTHGVKVSLSPTDFSSCCNLHDLCYGQCGSPKKECDEYFEGCMIAQCHREHHI-----PSNSSIDSHH-------------HNPKRQSKELRRCVRAARLYYHGVYGFGCFAYRKAQKQHCECGPIGEGEEGEGIVRERLAGGRGGES---------LGGLYALMERAAQAMTPTAGAVHWKWEEFL 274
The following BLAST results are available for this feature:
BLAST of NO04G01800.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28555.13.200e-8758.61secreted salivary gland [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G01800NO04G01800Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G01800.1NO04G01800.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G01800.1.cds1NO04G01800.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G01800.1.cds2NO04G01800.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G01800.1 ID=NO04G01800.1|Name=NO04G01800.1|organism=Nannochloropsis oceanica|type=mRNA|length=1606bp
CACAGGCACTTCAGGGCAAAAAAATTATGCATAATCTCTTCACCATGGTC
GGCCGGGCCAGCAACTGGCGCTCGTCTCCGCCCAGCACCTCTATTGGTAT
GAACCCCTCTCCCGCCCATGTCCCCTCCAGCCCGTTTGCATTTGCTGGGG
GCAAGTGCAAGGCGGCTGCACGATCCCTCGGATGGCGCAGCGTGTACATG
TTTGTCTCGCTACTGGCGTTATTGGGGGCGTCGGGGGGTCAGAGCCGATT
GATCGAATTCGTTTGCAAGCAATTGGGTGGCAGCAACAAATGTCCGCCCA
TCCAAACCTGCCCAGTGGGGGAAGCCCTCTTCCACAAGCCACACTCCAAG
CCCACCTACGATGGGTGCGGAACGCACGGCCTGAAAGTCAGCTTGAGCCC
TACGGACTTCTCCTCTTGCTGTAATCTGCATGATTTGTGCTACGGTCAAT
GCGGGCGCCGGAAGAAAGAGTGTGATGATTTTTTTGAGGCTTGTATGTTG
GCACAGTGTCAGCGTGAACATCATGTCAATAGTAGTAGCAGCAGCAGTAG
CAGTAGTAGCAGCAGCCACCACTCGCATTCCCTTCAAATACAGGGAGGAG
GACACAGGCAGCAGCAGCCAATGCCTCAATCGAAGGAACTGAAGCGATGC
GTGCGGGCCGCTAAACTATACTATCACGCTGTGTATGGACTTGGTTGCTT
CGCATTTCGTCGAGCCAAAGCGAAACACTGCGAGTGCCGGCCTTATCAGA
AGGGGGATAAGGACAAGGAGAAGGAGGAGGAGGGCGGTGAGGGTGGTAAG
AAGAGCAAAACGGAGAGGATTAATGACATAAGGGGGAGCCTCGTGGCGGT
GATGGAAAGAGCGGCTCGGGCCGACACGCCAGTGGCTGGGGTTAGTCATT
GCAAATGGGAAGAATTCCTTTGAAACGCACTTGCGCTGTTTCCGGGCGGT
GGTAGCAAGAGGAAAGAGGAAAAATAGTTAGATAGAAAGGAAGGCGAACC
CAAGCCGACGCTTCTGAGAGTTGTTCTGGAGGGAAAGAGGCCGAAGGTTA
GGCATTCCACGTAACGAGGAAATTTTTGCATGCAGAAAGAGGATTTTGTG
GTTTGAAATAAACCAAACGGGGGACTTGTCCCGGAAAGTATGAGTACATG
TCAGAGGAATGGCGAAATGGACCAGGGGGTGAAGAGACAGGACGATGTGG
TCTTTGGTCATTTGGAGATGTATTGTATCACGCAGTAGAGGATATTTCTC
CTAAAGGTCTGGAAATTTGCGAATTTAAGGAAGGATGTATCTCTCAAGTA
TTTAATGATTGTTTTATAAGAGAGAGAGTGGTTGTTTTGGTAAAAGGTTT
GAAAGAGGCAGGAGGGGGAGGATGGGGAATGGATGAAATGAAATGGAGAA
AACTGTGTACATGTGTGTGTAATATATACAAGGGCACATTCGGGTGCTTG
ATGTGTGTGTAGTGTGTGAGTATGTGTGTTGGTTCCGTATCTTTCTTCGA
GTGAGAGGGGGGGGGGAAGAAACGGACTGATTGAAGAAAACGAATGAACG
GAAAGCGACCGAAAATAAAAAAAAAACACGGGCTTTTGAATGAGAAAGAG
AAATCA
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protein sequence of NO04G01800.1

>NO04G01800.1-protein ID=NO04G01800.1-protein|Name=NO04G01800.1|organism=Nannochloropsis oceanica|type=polypeptide|length=299bp
MHNLFTMVGRASNWRSSPPSTSIGMNPSPAHVPSSPFAFAGGKCKAAARS
LGWRSVYMFVSLLALLGASGGQSRLIEFVCKQLGGSNKCPPIQTCPVGEA
LFHKPHSKPTYDGCGTHGLKVSLSPTDFSSCCNLHDLCYGQCGRRKKECD
DFFEACMLAQCQREHHVNSSSSSSSSSSSSHHSHSLQIQGGGHRQQQPMP
QSKELKRCVRAAKLYYHAVYGLGCFAFRRAKAKHCECRPYQKGDKDKEKE
EEGGEGGKKSKTERINDIRGSLVAVMERAARADTPVAGVSHCKWEEFL*
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mRNA from alignment at chr4:527441..529264-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G01800.1 ID=NO04G01800.1|Name=NO04G01800.1|organism=Nannochloropsis oceanica|type=mRNA|length=1824bp|location=Sequence derived from alignment at chr4:527441..529264- (Nannochloropsis oceanica)
CACAGGCACTTCAGGGCAAAAAAATTATGCATAATCTCTTCACCATGGTC
GGCCGGGCCAGCAACTGGCGCTCGTCTCCGCCCAGCACCTCTATTGGTAT
GAACCCCTCTCCCGCCCATGTCCCCTCCAGCCCGTTTGCATTTGCTGGGG
GCAAGTGCAAGGCGGCTGCACGATCCCTCGGATGGCGCAGCGTGTACATG
TTTGTCTCGCTACTGGCGTTATTGGGGGCGTCGGGGGGTCAGAGCCGATT
GATCGAATTCGTTTGCAAGCAATTGGGTGGCAGCAACAAATGTCCGCCCA
TCCAAACCTGCCCAGTGGGGGAAGCCCTCTTCCACAAGCCACACTCCAAG
GTATACATCAGCAAATGAATGTCTCGGCAAAGTAGAAAAACGAAGGGGTT
GTGATGAATCGCAAGGAGAGGAGAATTGGGCACTATTTGCTTCTGTGTCC
CAACGCATTGCCCCCTCCTCCTCCTCCTCCTCCTCCACTTCCACCCCCTC
CTTTATTCTTGAGATTCACGCTTAAATCATTCTCCCTCTACCTCTACCTT
CTGGTTCCCCAATTACAGCCCACCTACGATGGGTGCGGAACGCACGGCCT
GAAAGTCAGCTTGAGCCCTACGGACTTCTCCTCTTGCTGTAATCTGCATG
ATTTGTGCTACGGTCAATGCGGGCGCCGGAAGAAAGAGTGTGATGATTTT
TTTGAGGCTTGTATGTTGGCACAGTGTCAGCGTGAACATCATGTCAATAG
TAGTAGCAGCAGCAGTAGCAGTAGTAGCAGCAGCCACCACTCGCATTCCC
TTCAAATACAGGGAGGAGGACACAGGCAGCAGCAGCCAATGCCTCAATCG
AAGGAACTGAAGCGATGCGTGCGGGCCGCTAAACTATACTATCACGCTGT
GTATGGACTTGGTTGCTTCGCATTTCGTCGAGCCAAAGCGAAACACTGCG
AGTGCCGGCCTTATCAGAAGGGGGATAAGGACAAGGAGAAGGAGGAGGAG
GGCGGTGAGGGTGGTAAGAAGAGCAAAACGGAGAGGATTAATGACATAAG
GGGGAGCCTCGTGGCGGTGATGGAAAGAGCGGCTCGGGCCGACACGCCAG
TGGCTGGGGTTAGTCATTGCAAATGGGAAGAATTCCTTTGAAACGCACTT
GCGCTGTTTCCGGGCGGTGGTAGCAAGAGGAAAGAGGAAAAATAGTTAGA
TAGAAAGGAAGGCGAACCCAAGCCGACGCTTCTGAGAGTTGTTCTGGAGG
GAAAGAGGCCGAAGGTTAGGCATTCCACGTAACGAGGAAATTTTTGCATG
CAGAAAGAGGATTTTGTGGTTTGAAATAAACCAAACGGGGGACTTGTCCC
GGAAAGTATGAGTACATGTCAGAGGAATGGCGAAATGGACCAGGGGGTGA
AGAGACAGGACGATGTGGTCTTTGGTCATTTGGAGATGTATTGTATCACG
CAGTAGAGGATATTTCTCCTAAAGGTCTGGAAATTTGCGAATTTAAGGAA
GGATGTATCTCTCAAGTATTTAATGATTGTTTTATAAGAGAGAGAGTGGT
TGTTTTGGTAAAAGGTTTGAAAGAGGCAGGAGGGGGAGGATGGGGAATGG
ATGAAATGAAATGGAGAAAACTGTGTACATGTGTGTGTAATATATACAAG
GGCACATTCGGGTGCTTGATGTGTGTGTAGTGTGTGAGTATGTGTGTTGG
TTCCGTATCTTTCTTCGAGTGAGAGGGGGGGGGGAAGAAACGGACTGATT
GAAGAAAACGAATGAACGGAAAGCGACCGAAAATAAAAAAAAAACACGGG
CTTTTGAATGAGAAAGAGAAATCA
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Coding sequence (CDS) from alignment at chr4:527441..529264-

>NO04G01800.1 ID=NO04G01800.1|Name=NO04G01800.1|organism=Nannochloropsis oceanica|type=CDS|length=897bp|location=Sequence derived from alignment at chr4:527441..529264- (Nannochloropsis oceanica)
ATGCATAATCTCTTCACCATGGTCGGCCGGGCCAGCAACTGGCGCTCGTC
TCCGCCCAGCACCTCTATTGGTATGAACCCCTCTCCCGCCCATGTCCCCT
CCAGCCCGTTTGCATTTGCTGGGGGCAAGTGCAAGGCGGCTGCACGATCC
CTCGGATGGCGCAGCGTGTACATGTTTGTCTCGCTACTGGCGTTATTGGG
GGCGTCGGGGGGTCAGAGCCGATTGATCGAATTCGTTTGCAAGCAATTGG
GTGGCAGCAACAAATGTCCGCCCATCCAAACCTGCCCAGTGGGGGAAGCC
CTCTTCCACAAGCCACACTCCAAGCCCACCTACGATGGGTGCGGAACGCA
CGGCCTGAAAGTCAGCTTGAGCCCTACGGACTTCTCCTCTTGCTGTAATC
TGCATGATTTGTGCTACGGTCAATGCGGGCGCCGGAAGAAAGAGTGTGAT
GATTTTTTTGAGGCTTGTATGTTGGCACAGTGTCAGCGTGAACATCATGT
CAATAGTAGTAGCAGCAGCAGTAGCAGTAGTAGCAGCAGCCACCACTCGC
ATTCCCTTCAAATACAGGGAGGAGGACACAGGCAGCAGCAGCCAATGCCT
CAATCGAAGGAACTGAAGCGATGCGTGCGGGCCGCTAAACTATACTATCA
CGCTGTGTATGGACTTGGTTGCTTCGCATTTCGTCGAGCCAAAGCGAAAC
ACTGCGAGTGCCGGCCTTATCAGAAGGGGGATAAGGACAAGGAGAAGGAG
GAGGAGGGCGGTGAGGGTGGTAAGAAGAGCAAAACGGAGAGGATTAATGA
CATAAGGGGGAGCCTCGTGGCGGTGATGGAAAGAGCGGCTCGGGCCGACA
CGCCAGTGGCTGGGGTTAGTCATTGCAAATGGGAAGAATTCCTTTGA
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Synonyms
Publications