NO04G01210.1, NO04G01210.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G01210.1
Unique NameNO04G01210.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1784
Alignment locationchr4:378800..380925 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:378800..380925 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G01210.1 vs.
Match: EWM28564.1 (Protein of unknown function DUF3321 [Nannochloropsis gaditana])

HSP 1 Score: 336.7 bits (862), Expect = 7.500e-89
Identity = 186/292 (63.70%), Postives = 224/292 (76.71%), Query Frame = 0 
Query:    1 MGKKRKSQPVVEVVKSRKRARKIVTQFHKVNDAIAVLEKNASLAPAEKEATRKELEGNLEALGGRAAYQSASQLSVSFHNTSKWVLARLQAMGVLAPKPSSTSSSSSSSSVPPVRQRKLRLLEVGAITTTLLDCPALETTAIDLLSRHARIRQQDFFTLPLPPSLTFHVIVSSMVINSLPTPVSRGLFLRRCHSYLQPHTGHLFLMLPSSCLTHSKNITTAKFRLMLTENIGFRIMEERWTPKVAYFVLRAEDGKVERIRGSEGEGKGGGKAGGRRERKASSSWAKNFDVVL 293
            MG+KRK+QPVV VVKSRKRARKIVTQFHKVNDA+A+LE++A+L   +KEA R  L+ +LEALGGRAAYQSASQLSVSFH+TSKWVLARLQAMG++  + + + S S  S  P       RLLEVGAITTTLLDCPA++TTAIDLLSRHARI+Q DFF LP PP  TF VIV+SM+INSLPT  +RG FLRRCH+YL+   G+LFL+LPSSCLTHSK +T  KFR ++T  +GF ++EE+WTPK   FVLRA  GK +  R + G           RE+  SSSWAK FD++L
Sbjct:    1 MGRKRKAQPVVPVVKSRKRARKIVTQFHKVNDALAILEEDANLNLVDKEAHRSRLQESLEALGGRAAYQSASQLSVSFHSTSKWVLARLQAMGIIRMQSAPSLSPSQPSQKP-------RLLEVGAITTTLLDCPAVQTTAIDLLSRHARIQQIDFFHLPQPPLSTFDVIVASMLINSLPTASARGDFLRRCHAYLEASKGYLFLILPSSCLTHSKYMTVGKFRSLVTTRVGFAVVEEKWTPKTVAFVLRAS-GKCDEGRLTAG-----------REKVTSSSWAKKFDILL 273
The following BLAST results are available for this feature:
BLAST of NO04G01210.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28564.17.500e-8963.70Protein of unknown function DUF3321 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G01210NO04G01210Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G01210.1NO04G01210.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G01210.1.cds1NO04G01210.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G01210.1.cds2NO04G01210.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G01210.1.cds3NO04G01210.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G01210.1 ID=NO04G01210.1|Name=NO04G01210.1|organism=Nannochloropsis oceanica|type=mRNA|length=1784bp
CCTTCTTCCCGTTCCTCTTCTTCCTCTTCTTCCTCGTCCTCCTCCTCCTC
CTCTTCGCCTTCCCCCTCTCCTACTCCTGCATCGTCCGAATCAATCACCA
TGGTTTGTTGAAATCCACCCGCTCTGCCTGGATGGTGTGATCGGTGTGGT
ATTGGGGGAGGGACTGCGCCGTCGTCCTCGCTAGAGCTGTCGGTGTAATC
GCTCTCCTCATCATCGCTGCTCACCGCCATGGCCGCGTCCGTACGTGCAG
GCCCACACTTTGTCTATTTTTTCCATGTTTGCGTGTAGGTCGTGTTATAG
CTTGGTAAAATTAAGTGCTGTGGACGCATCAGAAAGGGGGAGAGACGGAC
CCGGCGATGCGGCGATCGTAGGCCGACAACGCTTATATAGCTTCAACTAA
AAGGCTGAAGGAAAGTCTCCATGATGCACCTTATCATGCTAATTCTGCAT
GGGGCAATACCTCACGTGATTACAGAAATATACATCCTTACTCGTCCTCC
TGGACGAAGGGGACTGAGAGACTTCCCTTCCTTTTTGTGCTGCTTCGTGA
TGATGGGCTGCGACGAGCCCGCTCTGTTCTCACTCTGCCCATCCACACCC
ACCACACACACAAGAGAAAGCAAGCATGGACATGGTCAGCAGCCGCAGGA
GCAGTTCAAGCTACAGTCGCTGCCAGACTTAACAGGGCTGGCACCGCGGT
CGTGTTCGAGTGTGGCCCGCGGGGTGCAGCCTGCATCAACGGTCAGTCGC
AAAGGATATCACGCATCCAACTACCAGCCGTAGCCATGGGGAAGAAACGC
AAATCCCAACCCGTAGTGGAGGTCGTTAAAAGCCGGAAACGCGCCCGCAA
AATCGTGACTCAATTCCACAAAGTGAACGATGCTATTGCGGTGCTCGAGA
AGAACGCCAGCTTGGCCCCAGCCGAAAAAGAGGCGACCCGCAAGGAGCTG
GAAGGTAACCTAGAAGCTCTCGGTGGCCGCGCCGCCTACCAGTCCGCCTC
TCAACTCTCCGTCTCCTTCCACAACACCAGCAAGTGGGTCCTCGCCCGCT
TGCAAGCCATGGGTGTTCTCGCGCCCAAGCCTTCTTCCACCTCCTCGTCG
TCGTCCTCTTCCTCCGTCCCTCCCGTCCGTCAAAGAAAGCTCCGCCTCTT
GGAGGTTGGCGCCATCACCACCACCCTCCTCGATTGCCCCGCTCTCGAGA
CCACCGCCATCGACCTCCTCTCCCGCCACGCCCGGATTCGACAACAAGAT
TTTTTCACCCTCCCCCTTCCTCCCTCACTTACCTTCCACGTTATCGTCTC
CTCTATGGTGATCAATTCTCTCCCCACTCCTGTTTCCCGTGGCCTCTTTC
TCCGACGCTGCCACTCCTATCTCCAGCCACACACCGGCCACCTGTTCCTC
ATGCTTCCTTCATCGTGCCTGACGCACTCTAAAAACATCACGACGGCCAA
GTTTCGTTTAATGTTGACAGAAAACATAGGGTTTAGAATCATGGAAGAGC
GGTGGACTCCCAAGGTGGCTTATTTTGTGTTGCGGGCAGAAGACGGAAAG
GTGGAGAGAATAAGGGGAAGTGAAGGAGAAGGGAAAGGAGGAGGAAAAGC
GGGTGGACGGCGGGAGAGGAAAGCGTCTTCGTCATGGGCGAAGAATTTCG
ATGTTGTGTTATAGAGTCGGGAGGGAGAGGGAGGGAAGGAGAGAGGCGCC
TGGGTGGGATGGGCCGCACTGTAGTGCAGGAAATTATGTTCAGGAATGTA
AAGAATCTAGCTGCCCCTAAAAAAAATACAGAAT
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protein sequence of NO04G01210.1

>NO04G01210.1-protein ID=NO04G01210.1-protein|Name=NO04G01210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=293bp
MGKKRKSQPVVEVVKSRKRARKIVTQFHKVNDAIAVLEKNASLAPAEKEA
TRKELEGNLEALGGRAAYQSASQLSVSFHNTSKWVLARLQAMGVLAPKPS
STSSSSSSSSVPPVRQRKLRLLEVGAITTTLLDCPALETTAIDLLSRHAR
IRQQDFFTLPLPPSLTFHVIVSSMVINSLPTPVSRGLFLRRCHSYLQPHT
GHLFLMLPSSCLTHSKNITTAKFRLMLTENIGFRIMEERWTPKVAYFVLR
AEDGKVERIRGSEGEGKGGGKAGGRRERKASSSWAKNFDVVL*
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mRNA from alignment at chr4:378800..380925+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G01210.1 ID=NO04G01210.1|Name=NO04G01210.1|organism=Nannochloropsis oceanica|type=mRNA|length=2126bp|location=Sequence derived from alignment at chr4:378800..380925+ (Nannochloropsis oceanica)
CCTTCTTCCCGTTCCTCTTCTTCCTCTTCTTCCTCGTCCTCCTCCTCCTC
CTCTTCGCCTTCCCCCTCTCCTACTCCTGCATCGTCCGAATCAATCACCA
TGGTTTGTTGAAATCCACCCGCTCTGCCTGGATGGTGTGATCGGTGTGGT
ATTGGGGGAGGGACTGCGCCGTCGTCCTCGCTAGAGCTGTCGGTGTAATC
GCTCTCCTCATCATCGCTGCTCACCGCCATGGCCGCGTCCGTACGTGCAG
GCCCACACTTTGTCTATTTTTTCCATGTTTGCGTGTAGGTCGTGTTATAG
CTTGGTAAAATTAAGTGCTGTGGACGCATCAGAAAGGGGGAGAGACGGAC
CCGGCGATGCGGCGATCGTAGGCCGACAACGCTTATATAGCTTCAACTAA
AAGGCTGAAGGAAAGTCTCCATGATGCACCTTATCATGCTAATTCTGCAT
GGGGCAATACCTCACGTGATTACAGAAATATACATCCTTACTCGTCCTCC
TGGACGAAGGGGACTGAGAGACTTCCCTTCCTTTTTGTGCTGCTTCGTGA
TGATGGGCTGCGACGAGCCCGCTCTGTTCTCACTCTGCCCATCCACACCC
ACCACACACACAAGAGAAAGCAAGCATGGACATGGTCAGCAGCCGCAGGA
GCAGTTCAAGCTACAGTCGCTGCCAGACTTAACAGGGCTGGCACCGCGGT
CGTGTTCGAGTGTGGCCCGCGGGGTGCAGCCTGCATCAACGGTCAGTCGC
AAAGGATATCACGCATCCAACTACCAGCCGTAGCCATGGGGAAGAAACGC
AAATCCCAACCCGTAGTGGAGGTCGTTAAAAGTCAGTTTATGGGCGGCCT
GTCTAGTCCAGATCCCGCGGCGTGGCGCATTGTGTATGATTTGTGTATTG
TGTGTGTCCACCCAAAAAACTCCCACCTACCCCTCCCTCCAACCCCATCC
TCTCAACCAGCCTCTGGCTCATCTCAACGAACCTCGATCCACAAAAACAG
GCCGGAAACGCGCCCGCAAAATCGTGACTCAATTCCACAAAGTGAACGAT
GCTATTGCGGTGCTCGAGAAGAACGCCAGCTTGGCCCCAGCCGAAAAAGA
GGCGACCCGCAAGGAGTAAGTAAGTTCCCATTCCACGAAGTCGGGAAAGT
TGGCCTCTTTGCCTCTGCCTTGCATGCTCTCCCCAAATCATTATTAGCTT
ATCTTCCTGATATAGAAGACCTGAACCGCTCACCATTTCCCTTCACTTCA
TGTCACACATCACAACCCTTTTTTAAAAAATATCAAAGGCTGGAAGGTAA
CCTAGAAGCTCTCGGTGGCCGCGCCGCCTACCAGTCCGCCTCTCAACTCT
CCGTCTCCTTCCACAACACCAGCAAGTGGGTCCTCGCCCGCTTGCAAGCC
ATGGGTGTTCTCGCGCCCAAGCCTTCTTCCACCTCCTCGTCGTCGTCCTC
TTCCTCCGTCCCTCCCGTCCGTCAAAGAAAGCTCCGCCTCTTGGAGGTTG
GCGCCATCACCACCACCCTCCTCGATTGCCCCGCTCTCGAGACCACCGCC
ATCGACCTCCTCTCCCGCCACGCCCGGATTCGACAACAAGATTTTTTCAC
CCTCCCCCTTCCTCCCTCACTTACCTTCCACGTTATCGTCTCCTCTATGG
TGATCAATTCTCTCCCCACTCCTGTTTCCCGTGGCCTCTTTCTCCGACGC
TGCCACTCCTATCTCCAGCCACACACCGGCCACCTGTTCCTCATGCTTCC
TTCATCGTGCCTGACGCACTCTAAAAACATCACGACGGCCAAGTTTCGTT
TAATGTTGACAGAAAACATAGGGTTTAGAATCATGGAAGAGCGGTGGACT
CCCAAGGTGGCTTATTTTGTGTTGCGGGCAGAAGACGGAAAGGTGGAGAG
AATAAGGGGAAGTGAAGGAGAAGGGAAAGGAGGAGGAAAAGCGGGTGGAC
GGCGGGAGAGGAAAGCGTCTTCGTCATGGGCGAAGAATTTCGATGTTGTG
TTATAGAGTCGGGAGGGAGAGGGAGGGAAGGAGAGAGGCGCCTGGGTGGG
ATGGGCCGCACTGTAGTGCAGGAAATTATGTTCAGGAATGTAAAGAATCT
AGCTGCCCCTAAAAAAAATACAGAAT
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Coding sequence (CDS) from alignment at chr4:378800..380925+

>NO04G01210.1 ID=NO04G01210.1|Name=NO04G01210.1|organism=Nannochloropsis oceanica|type=CDS|length=879bp|location=Sequence derived from alignment at chr4:378800..380925+ (Nannochloropsis oceanica)
ATGGGGAAGAAACGCAAATCCCAACCCGTAGTGGAGGTCGTTAAAAGCCG
GAAACGCGCCCGCAAAATCGTGACTCAATTCCACAAAGTGAACGATGCTA
TTGCGGTGCTCGAGAAGAACGCCAGCTTGGCCCCAGCCGAAAAAGAGGCG
ACCCGCAAGGAGCTGGAAGGTAACCTAGAAGCTCTCGGTGGCCGCGCCGC
CTACCAGTCCGCCTCTCAACTCTCCGTCTCCTTCCACAACACCAGCAAGT
GGGTCCTCGCCCGCTTGCAAGCCATGGGTGTTCTCGCGCCCAAGCCTTCT
TCCACCTCCTCGTCGTCGTCCTCTTCCTCCGTCCCTCCCGTCCGTCAAAG
AAAGCTCCGCCTCTTGGAGGTTGGCGCCATCACCACCACCCTCCTCGATT
GCCCCGCTCTCGAGACCACCGCCATCGACCTCCTCTCCCGCCACGCCCGG
ATTCGACAACAAGATTTTTTCACCCTCCCCCTTCCTCCCTCACTTACCTT
CCACGTTATCGTCTCCTCTATGGTGATCAATTCTCTCCCCACTCCTGTTT
CCCGTGGCCTCTTTCTCCGACGCTGCCACTCCTATCTCCAGCCACACACC
GGCCACCTGTTCCTCATGCTTCCTTCATCGTGCCTGACGCACTCTAAAAA
CATCACGACGGCCAAGTTTCGTTTAATGTTGACAGAAAACATAGGGTTTA
GAATCATGGAAGAGCGGTGGACTCCCAAGGTGGCTTATTTTGTGTTGCGG
GCAGAAGACGGAAAGGTGGAGAGAATAAGGGGAAGTGAAGGAGAAGGGAA
AGGAGGAGGAAAAGCGGGTGGACGGCGGGAGAGGAAAGCGTCTTCGTCAT
GGGCGAAGAATTTCGATGTTGTGTTATAG
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Synonyms
Publications