NO04G00840.1, NO04G00840.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G00840.1
Unique NameNO04G00840.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1131
Alignment locationchr4:279297..280555 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:279297..280555 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G00840.1 vs.
Match: EWM28471.1 (protein of unknown function DUF1995 [Nannochloropsis gaditana])

HSP 1 Score: 603.2 bits (1554), Expect = 5.500e-169
Identity = 307/377 (81.43%), Postives = 339/377 (89.92%), Query Frame = 0 
Query:    1 MRSTRSTTAFL-ALLVASSTNAFVPPSHPAATLAARSANLPATAATIMHATTVPRRVGLEAIPDADLKEADKTPPPSTFFECTLQAYNSAAAAIKDGYKLLEVEFPPLPAAEMASQASSANSIGSANINLATDVAKYFVREGKQVVILVPDKDELDLIEEGMGTLSPAPNVTIRAVRARNSESAETMGELLLGIFSRAAKGRVLPWYNADIYISVITSGQELPDLEALHAADPDKPMIFFNLNLETHRGDLGLPAFPSKDLHYRFLSQIKPAYLLRTRQYAQTLSRPPFILNYQGALFRTYPGGYQCMLDTGNGRYRRVETSKNRPALNGFKEIITEALDVDDNETLAALRKGAFSKGTWWEKEENQVKEVSDNWRT 377
            MR T S+ A L +LL++ ST  F+ P +P+ +      +   ++   + ATTVPR VGLEAIP+ADLK ADKT PPSTFFECTLQAYN+AAAAIKDGYKLLEVEFPPLPAAEMASQASSANSIGSANINLA ++A+YFVREGKQVVILVPDKDELDLIEEG+GTLSP+PNVTIRAVRARNSESA+TMGEL+LGIFSRAAKG+VLPWYNADIYISVI+SGQELPDLEALH ADP KP+IFFNLNLETHRGDLGLPAFPSKDLHYRFLS IKP YLLRTRQYAQTLSRPPFILNYQGALFRTYPGGYQCMLDTGNGRYRRVETS+ RPAL+GFK+IIT+ALDV+DN+TLA+LR+GAFSK TWWEKEE   KE SDNWRT
Sbjct:    1 MRHTWSSIACLFSLLISQSTIGFLLP-YPSGSFPMARPHSTLSSQVALFATTVPRAVGLEAIPEADLKAADKTAPPSTFFECTLQAYNAAAAAIKDGYKLLEVEFPPLPAAEMASQASSANSIGSANINLANEMAQYFVREGKQVVILVPDKDELDLIEEGLGTLSPSPNVTIRAVRARNSESADTMGELILGIFSRAAKGKVLPWYNADIYISVISSGQELPDLEALHQADPTKPLIFFNLNLETHRGDLGLPAFPSKDLHYRFLSNIKPVYLLRTRQYAQTLSRPPFILNYQGALFRTYPGGYQCMLDTGNGRYRRVETSRERPALSGFKDIITQALDVEDNDTLASLRRGAFSK-TWWEKEEGWAKESSDNWRT 375
The following BLAST results are available for this feature:
BLAST of NO04G00840.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
10020030040050060070080090010001100Expect = 5.50e-169 / Id = 81.43SequenceEWM28471.1
Match NameE-valueIdentityDescription
EWM28471.15.500e-16981.43protein of unknown function DUF1995 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G00840NO04G00840Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G00840.1NO04G00840.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G00840.1.cds1NO04G00840.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00840.1.cds2NO04G00840.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G00840.1 ID=NO04G00840.1|Name=NO04G00840.1|organism=Nannochloropsis oceanica|type=mRNA|length=1131bp
ATGAGGAGCACACGCAGCACCACAGCCTTCTTGGCACTCTTGGTGGCCAG
CAGCACTAACGCCTTCGTCCCCCCCTCGCATCCTGCCGCCACCTTGGCTG
CCCGCTCCGCGAACTTACCAGCCACGGCTGCTACCATCATGCACGCCACA
ACTGTGCCCCGTCGCGTGGGCCTTGAGGCTATACCCGATGCTGATTTGAA
GGAGGCCGACAAGACCCCTCCCCCCTCAACTTTCTTTGAGTGCACCCTCC
AGGCATATAACTCGGCCGCAGCGGCCATCAAAGACGGATATAAGCTGCTC
GAGGTGGAGTTTCCTCCCCTACCCGCCGCGGAGATGGCGTCGCAGGCCTC
AAGTGCTAACAGCATTGGCTCCGCGAATATTAATCTCGCCACAGACGTCG
CCAAATACTTCGTCCGTGAAGGCAAGCAAGTTGTCATCCTCGTCCCGGAT
AAGGACGAACTCGACCTAATCGAAGAAGGCATGGGCACCCTCTCCCCCGC
CCCAAATGTCACCATCCGTGCCGTCCGCGCCCGCAATTCAGAGTCCGCGG
AGACGATGGGCGAGCTATTGCTCGGAATTTTCTCCCGTGCCGCCAAAGGA
CGTGTGTTGCCGTGGTACAATGCCGATATCTACATCAGCGTCATCACCTC
CGGCCAAGAACTCCCTGACCTGGAAGCCCTCCACGCTGCAGACCCCGACA
AGCCCATGATTTTTTTCAACCTTAACTTGGAGACGCACCGAGGCGACCTA
GGGCTCCCCGCATTTCCTTCTAAAGACCTCCACTACCGCTTTCTCTCTCA
GATCAAGCCCGCCTACCTGTTGCGCACGCGGCAGTACGCCCAGACCCTCT
CCCGGCCCCCTTTTATCCTCAACTACCAAGGCGCCCTCTTCCGCACCTAC
CCCGGTGGATATCAATGCATGCTTGACACGGGCAATGGACGATATCGACG
GGTGGAGACCTCTAAGAACCGCCCAGCGTTGAACGGGTTTAAGGAAATCA
TCACGGAGGCATTGGATGTGGATGATAACGAGACGCTGGCTGCTTTGAGG
AAGGGGGCTTTTAGCAAGGGAACGTGGTGGGAGAAGGAGGAGAATCAGGT
GAAGGAGGTATCGGATAACTGGAGGACGTAG
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protein sequence of NO04G00840.1

>NO04G00840.1-protein ID=NO04G00840.1-protein|Name=NO04G00840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=377bp
MRSTRSTTAFLALLVASSTNAFVPPSHPAATLAARSANLPATAATIMHAT
TVPRRVGLEAIPDADLKEADKTPPPSTFFECTLQAYNSAAAAIKDGYKLL
EVEFPPLPAAEMASQASSANSIGSANINLATDVAKYFVREGKQVVILVPD
KDELDLIEEGMGTLSPAPNVTIRAVRARNSESAETMGELLLGIFSRAAKG
RVLPWYNADIYISVITSGQELPDLEALHAADPDKPMIFFNLNLETHRGDL
GLPAFPSKDLHYRFLSQIKPAYLLRTRQYAQTLSRPPFILNYQGALFRTY
PGGYQCMLDTGNGRYRRVETSKNRPALNGFKEIITEALDVDDNETLAALR
KGAFSKGTWWEKEENQVKEVSDNWRT*
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mRNA from alignment at chr4:279297..280555-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G00840.1 ID=NO04G00840.1|Name=NO04G00840.1|organism=Nannochloropsis oceanica|type=mRNA|length=1259bp|location=Sequence derived from alignment at chr4:279297..280555- (Nannochloropsis oceanica)
ATGAGGAGCACACGCAGCACCACAGCCTTCTTGGCACTCTTGGTGGCCAG
CAGCACTAACGCCTTCGTCCCCCCCTCGCATCCTGCCGCCACCTTGGCTG
CCCGCTCCGCGAACTTACCAGCCACGGCTGCTACCATCATGCACGCCACA
ACTGTGCCCCGTCGCGTGGGCCTTGAGGCTATACCCGATGCTGATTTGAA
GGAGGCCGACAAGACCCCTCCCCCCTCAACTTTCTTTGAGTGCACCCTCC
AGGCATATAACTCGGCCGCAGCGGCCATCAAAGACGGATATAAGCTGCTC
GAGGTGGAGTTTCCTCCCCTACCCGCCGCGGAGATGGCGTCGCAGGTATG
CTGACTCTGGTAAAAAGTTGCCGTTCTTTCGCTCTATGTCTTTTCTTCAA
GAAAAAAAGACAGAAAGCATCAGGTCATCCTCATCCTCATCCCTCCTCAT
CTTCCTCCCTCCCTCCCTCACAGGCCTCAAGTGCTAACAGCATTGGCTCC
GCGAATATTAATCTCGCCACAGACGTCGCCAAATACTTCGTCCGTGAAGG
CAAGCAAGTTGTCATCCTCGTCCCGGATAAGGACGAACTCGACCTAATCG
AAGAAGGCATGGGCACCCTCTCCCCCGCCCCAAATGTCACCATCCGTGCC
GTCCGCGCCCGCAATTCAGAGTCCGCGGAGACGATGGGCGAGCTATTGCT
CGGAATTTTCTCCCGTGCCGCCAAAGGACGTGTGTTGCCGTGGTACAATG
CCGATATCTACATCAGCGTCATCACCTCCGGCCAAGAACTCCCTGACCTG
GAAGCCCTCCACGCTGCAGACCCCGACAAGCCCATGATTTTTTTCAACCT
TAACTTGGAGACGCACCGAGGCGACCTAGGGCTCCCCGCATTTCCTTCTA
AAGACCTCCACTACCGCTTTCTCTCTCAGATCAAGCCCGCCTACCTGTTG
CGCACGCGGCAGTACGCCCAGACCCTCTCCCGGCCCCCTTTTATCCTCAA
CTACCAAGGCGCCCTCTTCCGCACCTACCCCGGTGGATATCAATGCATGC
TTGACACGGGCAATGGACGATATCGACGGGTGGAGACCTCTAAGAACCGC
CCAGCGTTGAACGGGTTTAAGGAAATCATCACGGAGGCATTGGATGTGGA
TGATAACGAGACGCTGGCTGCTTTGAGGAAGGGGGCTTTTAGCAAGGGAA
CGTGGTGGGAGAAGGAGGAGAATCAGGTGAAGGAGGTATCGGATAACTGG
AGGACGTAG
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Coding sequence (CDS) from alignment at chr4:279297..280555-

>NO04G00840.1 ID=NO04G00840.1|Name=NO04G00840.1|organism=Nannochloropsis oceanica|type=CDS|length=1131bp|location=Sequence derived from alignment at chr4:279297..280555- (Nannochloropsis oceanica)
ATGAGGAGCACACGCAGCACCACAGCCTTCTTGGCACTCTTGGTGGCCAG
CAGCACTAACGCCTTCGTCCCCCCCTCGCATCCTGCCGCCACCTTGGCTG
CCCGCTCCGCGAACTTACCAGCCACGGCTGCTACCATCATGCACGCCACA
ACTGTGCCCCGTCGCGTGGGCCTTGAGGCTATACCCGATGCTGATTTGAA
GGAGGCCGACAAGACCCCTCCCCCCTCAACTTTCTTTGAGTGCACCCTCC
AGGCATATAACTCGGCCGCAGCGGCCATCAAAGACGGATATAAGCTGCTC
GAGGTGGAGTTTCCTCCCCTACCCGCCGCGGAGATGGCGTCGCAGGCCTC
AAGTGCTAACAGCATTGGCTCCGCGAATATTAATCTCGCCACAGACGTCG
CCAAATACTTCGTCCGTGAAGGCAAGCAAGTTGTCATCCTCGTCCCGGAT
AAGGACGAACTCGACCTAATCGAAGAAGGCATGGGCACCCTCTCCCCCGC
CCCAAATGTCACCATCCGTGCCGTCCGCGCCCGCAATTCAGAGTCCGCGG
AGACGATGGGCGAGCTATTGCTCGGAATTTTCTCCCGTGCCGCCAAAGGA
CGTGTGTTGCCGTGGTACAATGCCGATATCTACATCAGCGTCATCACCTC
CGGCCAAGAACTCCCTGACCTGGAAGCCCTCCACGCTGCAGACCCCGACA
AGCCCATGATTTTTTTCAACCTTAACTTGGAGACGCACCGAGGCGACCTA
GGGCTCCCCGCATTTCCTTCTAAAGACCTCCACTACCGCTTTCTCTCTCA
GATCAAGCCCGCCTACCTGTTGCGCACGCGGCAGTACGCCCAGACCCTCT
CCCGGCCCCCTTTTATCCTCAACTACCAAGGCGCCCTCTTCCGCACCTAC
CCCGGTGGATATCAATGCATGCTTGACACGGGCAATGGACGATATCGACG
GGTGGAGACCTCTAAGAACCGCCCAGCGTTGAACGGGTTTAAGGAAATCA
TCACGGAGGCATTGGATGTGGATGATAACGAGACGCTGGCTGCTTTGAGG
AAGGGGGCTTTTAGCAAGGGAACGTGGTGGGAGAAGGAGGAGAATCAGGT
GAAGGAGGTATCGGATAACTGGAGGACGTAG
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Synonyms
Publications