NO04G00780.1, NO04G00780.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G00780.1
Unique NameNO04G00780.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length617
Alignment locationchr4:267198..268224 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:267198..268224 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO04G00780.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G00780NO04G00780Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G00780.1NO04G00780.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G00780.1.cds1NO04G00780.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00780.1.cds2NO04G00780.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00780.1.cds3NO04G00780.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G00780.1 ID=NO04G00780.1|Name=NO04G00780.1|organism=Nannochloropsis oceanica|type=mRNA|length=617bp
AACACACAGGCACCCTTCCTCTACGCGGGGTTTGACCCAACGTTCGCCCG
ACCTACAGTCGGCAGGCGGCAAAACACATGTCCACGCCTCGAACAAACAA
CGCAGAGGATACCGGCGCTCCTCCATTCATCGTCCCCATGGCGGAGATCC
GCTCGAGTAGCGCCAGGAGCCTGACGTCCGAGGCCCCAAGCAGATCGAGC
ATGGCTAGCCCCGCGCTGGACGATTCCAATTTCCCCCTCTCCGGCAGCAG
TGGGGTCGGAGGAGGTGGCACTGGTTCCAGTTCCCATTCCGCGGCGGGGG
TGAGCCACTTGGCCTACAAGCACAGCAGGGAAGCGAGGAGACTAATCAAG
AAAGAAGCGTCCGCCGCCCTCCGTCGCAGCAGTGGCGCCAGCAGCAGTGG
AGGATCGAGTGCGAGGGAGGGGGCGTTTGAGCTGGTGATGCGTGAAAAGG
AGAGGGAGAAGGAGGGAGGGCTGGCGTACTCGGACTCGGACCGGGAGGAC
TTTTCGAGGCAATCGAGTTTCAAGAGCGATGGGGCGGGGGGGGCAAGTTG
GGGGGGATGGGGGGGAGCACAGGAAGGATCGGAAGGACAGAGAGCCCGGC
GATTGGTGGGATCGTGA
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protein sequence of NO04G00780.1

>NO04G00780.1-protein ID=NO04G00780.1-protein|Name=NO04G00780.1|organism=Nannochloropsis oceanica|type=polypeptide|length=180bp
MSTPRTNNAEDTGAPPFIVPMAEIRSSSARSLTSEAPSRSSMASPALDDS
NFPLSGSSGVGGGGTGSSSHSAAGVSHLAYKHSREARRLIKKEASAALRR
SSGASSSGGSSAREGAFELVMREKEREKEGGLAYSDSDREDFSRQSSFKS
DGAGGASWGGWGGAQEGSEGQRARRLVGS*
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mRNA from alignment at chr4:267198..268224+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G00780.1 ID=NO04G00780.1|Name=NO04G00780.1|organism=Nannochloropsis oceanica|type=mRNA|length=1027bp|location=Sequence derived from alignment at chr4:267198..268224+ (Nannochloropsis oceanica)
AACACACAGGCACCCTTCCTCTACGCGGGGTTTGACCCAACGTTCGCCCG
ACCTACAGTCGGCAGGCGGCAAAACACATGTCCACGCCTCGAACAAACAA
CGCAGAGGATACCGGCGCTCCTCCATTCATCGTCCCCATGGCGGAGATCC
GCTCGAGTAGCGCCAGGGTAAGCATGCCGTGTGCCAACGTGCTCGTGTCG
CAATGTCACCAACTGCCCCACCACGCCACAAAGCCCAACCCTCATAGGGC
CGGCAGCACGCCCACTATCTAATAAATGCTTGTATGCCGTTCGCAGCAAC
CCTTGTCGATTTGATTGTATCTGTGCCTCCTGTTCTCTTACTCGACATCA
TACCCTAAAAGACACGCGGACCCGCCCACACTCCCCCCCACACCACGCTC
CCCAATGTACTGCAGAGCCTGACGTCCGAGGCCCCAAGCAGATCGAGCAT
GGCTAGCCCCGCGCTGGACGATTCCAATTTCCCCCTCTCCGGCAGCAGTG
GGGTCGGAGGAGGTGGCACTGGTTCCAGTTCCCATTCCGCGGCGGGGGTG
AGCCACTTGGTACGATCTGGGGTTTTCAAATTCGAACGATCAGAAGGGAT
GATGAAAGAAATGAAGGGGGGGCGGGGAGGGAGGGAAAGACGTCTATCTT
TATTGATTAGTCCTCACGCACTACTCATTCACCTTACCCTCCTTTCCCCC
CTTCCCTCCACTCATATCTAGGCCTACAAGCACAGCAGGGAAGCGAGGAG
ACTAATCAAGAAAGAAGCGTCCGCCGCCCTCCGTCGCAGCAGTGGCGCCA
GCAGCAGTGGAGGATCGAGTGCGAGGGAGGGGGCGTTTGAGCTGGTGATG
CGTGAAAAGGAGAGGGAGAAGGAGGGAGGGCTGGCGTACTCGGACTCGGA
CCGGGAGGACTTTTCGAGGCAATCGAGTTTCAAGAGCGATGGGGCGGGGG
GGGCAAGTTGGGGGGGATGGGGGGGAGCACAGGAAGGATCGGAAGGACAG
AGAGCCCGGCGATTGGTGGGATCGTGA
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Coding sequence (CDS) from alignment at chr4:267198..268224+

>NO04G00780.1 ID=NO04G00780.1|Name=NO04G00780.1|organism=Nannochloropsis oceanica|type=CDS|length=540bp|location=Sequence derived from alignment at chr4:267198..268224+ (Nannochloropsis oceanica)
ATGTCCACGCCTCGAACAAACAACGCAGAGGATACCGGCGCTCCTCCATT
CATCGTCCCCATGGCGGAGATCCGCTCGAGTAGCGCCAGGAGCCTGACGT
CCGAGGCCCCAAGCAGATCGAGCATGGCTAGCCCCGCGCTGGACGATTCC
AATTTCCCCCTCTCCGGCAGCAGTGGGGTCGGAGGAGGTGGCACTGGTTC
CAGTTCCCATTCCGCGGCGGGGGTGAGCCACTTGGCCTACAAGCACAGCA
GGGAAGCGAGGAGACTAATCAAGAAAGAAGCGTCCGCCGCCCTCCGTCGC
AGCAGTGGCGCCAGCAGCAGTGGAGGATCGAGTGCGAGGGAGGGGGCGTT
TGAGCTGGTGATGCGTGAAAAGGAGAGGGAGAAGGAGGGAGGGCTGGCGT
ACTCGGACTCGGACCGGGAGGACTTTTCGAGGCAATCGAGTTTCAAGAGC
GATGGGGCGGGGGGGGCAAGTTGGGGGGGATGGGGGGGAGCACAGGAAGG
ATCGGAAGGACAGAGAGCCCGGCGATTGGTGGGATCGTGA
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Synonyms
Publications