NO04G00740.1, NO04G00740.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO04G00740.1
Unique Name	NO04G00740.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	969
Alignment location	chr4:254110..255078 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr4	genome	chr4:254110..255078 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO04G00740.1 vs.

BLAST of NO04G00740.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO04G00740	NO04G00740	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO04G00740.1	NO04G00740.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO04G00740.1.cds1	NO04G00740.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr4:254110..255078-
coding sequence from alignment at chr4:254110..255078-

mRNA sequence

>NO04G00740.1 ID=NO04G00740.1|Name=NO04G00740.1|organism=Nannochloropsis oceanica|type=mRNA|length=969bp
ATGGATTATGAAAGCAGTCGAACCAGTCGACAACCGAGTCAGCACCAGCG
GCATCATCTGCACCCACAAGAGGACTCCTTGGAACTAGGAGGCCGTTTAC
CCACCATCAATCCAGGCGTGACCAAGCCGTTTACGACCCGTTCTTCCTCT
GCCACAGCACCACATTCATCTTCTACAACAGTTTCGCCGGCGACAGCGCC
AGCACCTGCAGCAACGAGAGACACGTGCATTCGGCGCTTCGTCAACATGC
TTCTCGAAGGCACTACAATGCAATTTAGTCTCCTTTGTCTCGATGCCCTC
GTCATTGCTGCCCTCTTGCCCGAGCTCCCTGCGCTTGCTGCCTCGATGAC
TGATGCCCCTAAAAACGTCCCGTTGGTCGTGGCGTTAATAGTCGGCGGCC
TCTTTCTAGGGCGGGCTGGAGGGGGGCTTTGGTGCCATTACCGTTCCCAA
CCCTCCAGCAACAACACTCATCACGACGGTCATTACCATCAGAAGCCTTT
TTCTCTTAAGACTGTCCTTGTTGCTGCTTTGGTCTATAGCGTGGTCTGGT
TCGTCCAAGGCTTTGTGAATCGCCTCTCCGTCTTTATCATCGGACAATTC
GTCATCGGCTTCCTGATAGGCAAACACTCCATCTTTAAAAATAGGGCGCA
CCCCGGTACCACCCTCTCCTCCCCCTCCTCATCCTTCCCCGTCCTCCTCG
GGGCCATGATCGGTGTCCTGATCGGCGGGTTTTTCGACGCCCAGCACACC
CTCAACCCGTGTCCGGCAGACGAGGGGATAGCTTGCACCCGATGGGCCGA
TGGGGCGCCCATGGCCCCGGTAGGTGTAGCAGTTTTCGCTCTTGCAGTAG
GGATAGGAATTTTGTCGTCAGTGGCAGCCCAGTGGCAGCGCGCGGCCGCC
GCGGCGGCGGTGGCGCAGAGGGAGAGGAGGGAGGAAGGGAGGGAGGGGGG
GGGGAGTATCGACTTTTGA

protein sequence of NO04G00740.1

>NO04G00740.1-protein ID=NO04G00740.1-protein|Name=NO04G00740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=323bp
MDYESSRTSRQPSQHQRHHLHPQEDSLELGGRLPTINPGVTKPFTTRSSS
ATAPHSSSTTVSPATAPAPAATRDTCIRRFVNMLLEGTTMQFSLLCLDAL
VIAALLPELPALAASMTDAPKNVPLVVALIVGGLFLGRAGGGLWCHYRSQ
PSSNNTHHDGHYHQKPFSLKTVLVAALVYSVVWFVQGFVNRLSVFIIGQF
VIGFLIGKHSIFKNRAHPGTTLSSPSSSFPVLLGAMIGVLIGGFFDAQHT
LNPCPADEGIACTRWADGAPMAPVGVAVFALAVGIGILSSVAAQWQRAAA
AAAVAQRERREEGREGGGSIDF*

mRNA from alignment at chr4:254110..255078-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO04G00740.1 ID=NO04G00740.1|Name=NO04G00740.1|organism=Nannochloropsis oceanica|type=mRNA|length=969bp|location=Sequence derived from alignment at chr4:254110..255078- (Nannochloropsis oceanica)
ATGGATTATGAAAGCAGTCGAACCAGTCGACAACCGAGTCAGCACCAGCG
GCATCATCTGCACCCACAAGAGGACTCCTTGGAACTAGGAGGCCGTTTAC
CCACCATCAATCCAGGCGTGACCAAGCCGTTTACGACCCGTTCTTCCTCT
GCCACAGCACCACATTCATCTTCTACAACAGTTTCGCCGGCGACAGCGCC
AGCACCTGCAGCAACGAGAGACACGTGCATTCGGCGCTTCGTCAACATGC
TTCTCGAAGGCACTACAATGCAATTTAGTCTCCTTTGTCTCGATGCCCTC
GTCATTGCTGCCCTCTTGCCCGAGCTCCCTGCGCTTGCTGCCTCGATGAC
TGATGCCCCTAAAAACGTCCCGTTGGTCGTGGCGTTAATAGTCGGCGGCC
TCTTTCTAGGGCGGGCTGGAGGGGGGCTTTGGTGCCATTACCGTTCCCAA
CCCTCCAGCAACAACACTCATCACGACGGTCATTACCATCAGAAGCCTTT
TTCTCTTAAGACTGTCCTTGTTGCTGCTTTGGTCTATAGCGTGGTCTGGT
TCGTCCAAGGCTTTGTGAATCGCCTCTCCGTCTTTATCATCGGACAATTC
GTCATCGGCTTCCTGATAGGCAAACACTCCATCTTTAAAAATAGGGCGCA
CCCCGGTACCACCCTCTCCTCCCCCTCCTCATCCTTCCCCGTCCTCCTCG
GGGCCATGATCGGTGTCCTGATCGGCGGGTTTTTCGACGCCCAGCACACC
CTCAACCCGTGTCCGGCAGACGAGGGGATAGCTTGCACCCGATGGGCCGA
TGGGGCGCCCATGGCCCCGGTAGGTGTAGCAGTTTTCGCTCTTGCAGTAG
GGATAGGAATTTTGTCGTCAGTGGCAGCCCAGTGGCAGCGCGCGGCCGCC
GCGGCGGCGGTGGCGCAGAGGGAGAGGAGGGAGGAAGGGAGGGAGGGGGG
GGGGAGTATCGACTTTTGA

Coding sequence (CDS) from alignment at chr4:254110..255078-

>NO04G00740.1 ID=NO04G00740.1|Name=NO04G00740.1|organism=Nannochloropsis oceanica|type=CDS|length=969bp|location=Sequence derived from alignment at chr4:254110..255078- (Nannochloropsis oceanica)
ATGGATTATGAAAGCAGTCGAACCAGTCGACAACCGAGTCAGCACCAGCG
GCATCATCTGCACCCACAAGAGGACTCCTTGGAACTAGGAGGCCGTTTAC
CCACCATCAATCCAGGCGTGACCAAGCCGTTTACGACCCGTTCTTCCTCT
GCCACAGCACCACATTCATCTTCTACAACAGTTTCGCCGGCGACAGCGCC
AGCACCTGCAGCAACGAGAGACACGTGCATTCGGCGCTTCGTCAACATGC
TTCTCGAAGGCACTACAATGCAATTTAGTCTCCTTTGTCTCGATGCCCTC
GTCATTGCTGCCCTCTTGCCCGAGCTCCCTGCGCTTGCTGCCTCGATGAC
TGATGCCCCTAAAAACGTCCCGTTGGTCGTGGCGTTAATAGTCGGCGGCC
TCTTTCTAGGGCGGGCTGGAGGGGGGCTTTGGTGCCATTACCGTTCCCAA
CCCTCCAGCAACAACACTCATCACGACGGTCATTACCATCAGAAGCCTTT
TTCTCTTAAGACTGTCCTTGTTGCTGCTTTGGTCTATAGCGTGGTCTGGT
TCGTCCAAGGCTTTGTGAATCGCCTCTCCGTCTTTATCATCGGACAATTC
GTCATCGGCTTCCTGATAGGCAAACACTCCATCTTTAAAAATAGGGCGCA
CCCCGGTACCACCCTCTCCTCCCCCTCCTCATCCTTCCCCGTCCTCCTCG
GGGCCATGATCGGTGTCCTGATCGGCGGGTTTTTCGACGCCCAGCACACC
CTCAACCCGTGTCCGGCAGACGAGGGGATAGCTTGCACCCGATGGGCCGA
TGGGGCGCCCATGGCCCCGGTAGGTGTAGCAGTTTTCGCTCTTGCAGTAG
GGATAGGAATTTTGTCGTCAGTGGCAGCCCAGTGGCAGCGCGCGGCCGCC
GCGGCGGCGGTGGCGCAGAGGGAGAGGAGGGAGGAAGGGAGGGAGGGGGG
GGGGAGTATCGACTTTTGA

Synonyms

Publications