Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr4 genome chr4:243915..248485 -
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G00710.1 vs.
Match: EWM28488.1 (snf2 domanin containing helicase [Nannochloropsis gaditana])
HSP 1 Score: 1139.0 bits (2945), Expect = 0.000e+0
Identity = 640/843 (75.92%), Postives = 691/843 (81.97%), Query Frame = 0
Query: 17 SPQPKRGTPQKRDPSKYDSATS---NNNISPATIASSSPP---SSSAKRRKT----------VDSSSSSRSNGGKGTDHPS-PFVLTHTKSEREMAIANDDSAYVEDPMITASMKAAQEEAEQAVAAARAQEDEASLQGGLVVPVLLRSAGVTAQEAPATDAEEGDNEDSATPADTTGTADASSSNISSAPSTLEMTNDATTRSGLRRTAQLETLLQKASHFNNFILGKLEHGGKAAASATSAADEKQKKKTAAAAASAKKGKRGKG-STKEEADATAQVAQNREEALEDAARKMAEGKGEEGVMEQPASLQNGVLKGYQLEGLYWLSSLWMNGLNGILADEMGLGKTIQVIALFALLREKGVNGPFLVVAPLATLPNWVLEVRKWLPSASVCLYHGTAAEREVLREEQMPVGRERETSKLFPIVVTSYEMASIDRKHLMRYQWRWLVVDEGQRIKNRNGRLFHELKEIPSESRLLLSGTPIQNSLEELWTLLNFCQPDIFDNLGVFRSWFGFQNIGKDTTVDDIIDEEHRERVVSKLHEVLRPFLLRRMKRDVKIDLPEKKELVVYAHMSEIQHDYYRLGQAGQLREALMQQGVPDADKIRQTNPQMLQRKICNHPFLVAEPITRDGTPIGEANPKILIEACGKLKLLDRMMRKLYAQGHRVLLFSQMTEMLTLLEDYLHYRRWKYCRIDGSVKIDERQEQIEAFNKDRSIFCFLLSTRAGGLGINLAGADTVIIYDSDWNPHRDAQAQDRAHRIGQTRDVAVYRLLTVGSVEIEMMEAQISKKKLERLSITGGDFRKAGRRSRGEMTTENLRRLLADDVKDIQRRH--GGEEGAGEGGGRG 840
+P +R QK P K D+ + + N T +SS+ P S S KRRKT V S S +R + G HPS P L TKSERE DD + DP++TAS+KAAQEEAE+AVA ARA+EDEA + G VVP LL+ GVT +AP AEE ++T A AS ++ S P L M AT+RSG+RRTAQL+TLLQKASHFNNFILGKLEHGGKAAASA K KKK RG G S+ E+ A AQ A +REEAL DAARKM KG EG MEQPASL+NGVLK YQLEGL WLSSLWMNGLNGILADEMGLGKTIQVI+LFALLREKGVNGPFLVVAPLATLPNWVLEVRKWLPSASVCLYHGT ER+ LREEQMPVGRERETSKLFPIVVTSYEMASIDRKHLM Y WRWLVVDEGQRIKNRNGRLF+ELKEIPSESRLLLSGTPIQNSLEELWTLLNFCQPDIFD+LGVFRSWFGFQ+IGKDTTVDDIIDEEHRERVV+KLHEVLRPFLLRRMK DV IDLP KKELVVYAHMSEIQHDYYRL QAGQLREAL+QQGVPDADKIRQTNPQM+ RKICNHPFLVAEP+T+ GTPIGEANPKILIEACGKLKLLDRMM +L+AQGHRVLLFSQMTEMLT+LEDYLHYR+WKYCRIDGSVK+D RQEQIEAFNKD SIFCFLLSTRAGGLGINLAGADTVIIYDSDWNPHRDAQAQDRAHRIGQT+ VAVYR+LT+GSVEIEMMEAQISKKKLERLSITGGDFR+AGRRSRG++TTE LRRLLADDVKDIQRRH GG+EG EGG G
Sbjct: 17 TPSSQRQPLQKHTPRKTDTTRTVVGSGNGKKQTRSSSASPTKCSPSFKRRKTESEGESAVPTVLSQSINRLSPGP---HPSSPHDLVCTKSERETGDL-DDLRALNDPILTASIKAAQEEAERAVAVARAKEDEARKKSGPVVPRLLQGVGVTVNDAPT--AEEA--------LESTSNAPASHASSSLDPG-LPMNGAATSRSGMRRTAQLDTLLQKASHFNNFILGKLEHGGKAAASAAPVGAVKSKKK------------RGPGRSSNEDEAAAAQAAHDREEALGDAARKMEGRKGGEGSMEQPASLKNGVLKTYQLEGLNWLSSLWMNGLNGILADEMGLGKTIQVISLFALLREKGVNGPFLVVAPLATLPNWVLEVRKWLPSASVCLYHGTVPERQALREEQMPVGRERETSKLFPIVVTSYEMASIDRKHLMSYHWRWLVVDEGQRIKNRNGRLFNELKEIPSESRLLLSGTPIQNSLEELWTLLNFCQPDIFDDLGVFRSWFGFQSIGKDTTVDDIIDEEHRERVVTKLHEVLRPFLLRRMKADVNIDLPAKKELVVYAHMSEIQHDYYRLAQAGQLREALVQQGVPDADKIRQTNPQMVLRKICNHPFLVAEPVTKAGTPIGEANPKILIEACGKLKLLDRMMCRLHAQGHRVLLFSQMTEMLTVLEDYLHYRQWKYCRIDGSVKVDARQEQIEAFNKDPSIFCFLLSTRAGGLGINLAGADTVIIYDSDWNPHRDAQAQDRAHRIGQTKAVAVYRMLTIGSVEIEMMEAQISKKKLERLSITGGDFRQAGRRSRGDITTEGLRRLLADDVKDIQRRHGDGGQEGGKEGGKGG 832
The following BLAST results are available for this feature:
BLAST of NO04G00710.1 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
500 1000 1500 2000 2500 3000 Expect = 0.00e+0 / Id = 75.92 Sequence EWM28488.1
Match Name E-value Identity Description
EWM28488.1 0.000e+0 75.92 snf2 domanin containing helicase [Nannochloropsis ... [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO04G00710.1 ID=NO04G00710.1|Name=NO04G00710.1|organism=Nannochloropsis oceanica|type=mRNA|length=3312bp back to top protein sequence of NO04G00710.1
>NO04G00710.1-protein ID=NO04G00710.1-protein|Name=NO04G00710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=841bp back to top mRNA from alignment at chr4:243915..248485-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G00710.1 ID=NO04G00710.1|Name=NO04G00710.1|organism=Nannochloropsis oceanica|type=mRNA|length=4571bp|location=Sequence derived from alignment at chr4:243915..248485- (Nannochloropsis oceanica)A
TGGCCAACGAAATCAGAGTTCCTGCGGAAGGCAGCCACAAGGCTTCTTCG
CCACAACCAAAGCGTGGCACACCACAGAAGCGAGATCCTAGTAAATATGA
TAGCGCCACCAGCAACAACAACATAAGCCCGGCCACAATAGCGTCGTCTT
CCCCTCCTTCTTCTTCTGCTAAGCGCCGCAAGACGGTTGATAGCTCCAGC
AGCAGCAGAAGCAATGGCGGCAAAGGTACCGACCATCCTTCTCCCTTCGT
CCTCACGCACACCAAGAGCGAGCGCGAAATGGCCATAGCCAACGATGACA
GCGCTTACGTGGAAGACCCTATGATTACCGCATCAATGAAGGCTGCACAA
GAGGAAGCCGAACAAGCCGTGGCCGCGGCCCGAGCACAGGAAGACGAGGC
GTCCCTGCAAGGCGGTCTCGTGGTGCCTGTCCTGCTCCGATCCGCAGGGG
TAACGGCCCAAGAGGCTCCGGCTACCGATGCCGAGGAGGGAGACAATGAG
GATTCAGCCACTCCGGCAGATACCACTGGTACGGCTGACGCTTCTTCGTC
CAATATCTCCTCTGCACCCTCAACCTTAGAAATGACGAACGACGCCACGA
CCCGAAGCGGGCTCCGTCGCACGGCCCAGCTGGAAACCTTGCTGCAAAAG
GCCTCGCATTTCAACAACTTCATTTTGGGCAAACTGGAGCATGGGGGCAA
GGCGGCAGCCAGCGCCACTTCTGCCGCGGACGAAAAGCAGAAGAAAAAGA
CAGCAGCAGCAGCAGCGAGCGCAAAGAAAGGCAAAAGGGGGAAAGGTTCG
ACGAAAGAAGAAGCTGATGCGACAGCACAAGTAGCGCAGAACCGAGAGGA
GGCCCTGGAGGATGCAGCTCGGAAGATGGCGGAGGGCAAGGGGGAGGAGG
GGGTGATGGAGCAGCCGGCGTCGTTGCAGAATGGGGTGCTGAAAGGGTAT
CAGTTGGAGGGCCTCTACTGGCTCAGCTCGTTGTGGATGAATGGGTTGAA
CGGCATCCTGGCGGACGAGATG GTGAGTGATGTGTGGCGCGTTTAGAATG
AGGGGCGGGGCGGATAAGGGGGAGGAAGGGTGGGAGGGTGGGAGGAAAGG
CAGGAGGAAAGGAGGGGATGGTGCATGTGTGTACAGACAGCTTTCTGGTC
CTTGTAGGGTGCTTGTCGATTTCCTCTCTATGATCCACAGCTCCTGCGTT
CCCTCCCTCCCTTCCTCACTCCTTTCTCCCTTCCCTATCCCCCTAAGGGC
CTGGGCAAGACCATCCAAGTAATCGCGCTCTTCGCCCTCCTCCGCGAGAA
GGGCGTCAATGGTCCCTTCCTCGTCGTGGCGCCTCTTGCCACCCTGCCCA
ACTGGGTCCTGGAGGTCCGAAAATGGCTGCCCTCGGCGAGTGTGTGCCTG
TACCACGGCACGGCCGCGGAGAGAGAGGTGTTGAGGGAGGAGCAGATGCC
GGTGGGAAGGGAGAGGGAGACGAGCAAGCTGTTTCCGATCGTGGTGACTT
CGTACGAGATGGCCTCGATCGATAGGAAGCATCTCATGAG GTCGGTGGGT
GGGGTCTGGGAAATGTTTCGCGCCTTTTTCATATCCCCTTGCCCTCGGCC
TCACTCTTTGTCTCGCACTCCGTCTTTCTCTTCCCCTTTCTCTTTCTCTC
TCTCTTTTCCTCTCGCATCCATGGCCCTCGGATTGCTGTGTGTGATGGAC
GCAGGAGCTCACCGCCCTCCCCCTCCCTCCCTCTCCCCCTCCCTCACTCC
CTCCCTCCTTACGCAGGTACCAGTGGCGGTGGCTGGTGGTCGACGAAGGG
CAACGGATCAAGAACCGTAACGGTCGCCTGTTCCACGAACTGAAGGAGAT
TCCCTCCGAATCTCGCCTCCTCCTCTCGGGGACCCCCATCCAGAACTCCC
TCG GTACGCCCCTCCCTCCTCGTCCCTTCCTTCCGTCCCCATCACCTGGC
CTCCCTTTTACTACCGGCACTCACGTCTTGCTCCACATTCCTGATGTAAC
TCCCTCCCTTCCTCCCCTCTCCCTCTAGAGGAGCTATGGACGCTCCTCAA
TTTCTGCCAGCCGGACATCTTCGACAATCTGGGCGTGTTTCGCTCCTGGT
TCGGCTTCCAGAACATTGGCAAGGACACGACCGTGGACGACATCATCGAC
GAGGAGCACCGAGAAAGGGTGGTGAGCAAGCTCCACGAGGTCCTCCGTCC
CTTCCTCCTCCGCCGGATGAAGCGGGATGTCAAGATCGACCTTCCGGAGA
AGAAGGAGCTGGTGGTGTATGCACACATGTCGGAGATCCAGCACGACTAT
TACCGGCTGGGCCAGGCGGGGCAACTGCGCGAAGCCTTAATGCAGCAGGG
GGTCCCGGACGCAGACAAG GTAGGTAGACACCTGTCGTTCTTCCCTCCCT
CCCTGCCCCCCTCCCTTCCTCCCTTGGGCCTCTGACCGCATGTGGGGGGG
GATCTTGAGAGTCAGCACATCAGACAGCCTACCTTTCACCCCCCTCTCTT
TCTCCCTCCCTCCCTCAGATCCGGCAAACAAATCCACAGATGTTGCAGCG
TAAGATATGTAATCACCCTTTCCTCGTCGCCGAGCCAATCACCAGAGACG
GTACGCCGATAGGGGAGGCAAATCCCAAGATCCTGATCGAGGCATGCGGG
AAGCTTAAGCTGCTGGATAGGATGATGAGGAAGCTGTATGCCCAG GTGAG
GAGGAAGGAGGGAGTGAGGGAGGAAGGAGGGAGGGTGGGAGGGAGGCGAA
CTCCACGATTCTAGTTCAGGCGTGAGGAGTGCTGATATTGATGGCTGCAT
TCCTGGAGTCTAATTTTCACGTTCGTTCCCTCCCTCCCTCCCTCCCTATC
CCCCTACCTTCCCAGGGCCACCGCGTCCTCCTGTTCTCCCAGATGACGGA
GATGCTGACCCTTTTGGAAGACTACCTGCACTACCGTCGATGGAAGTACT
GCCGCATTGACGGCTCGGTCAAAATCGACGAACGGCAAGAGCAGATAGAG
GCTTTCAACAAGGACCGGTCCATCTTCTGCTTCCTCCTCTCCACGCGTGC
CGGTGGACTGGGGATCAACTTGGCTGGGGCGGACACG GTGAGTGTCTTCC
CTCCCTCATTCCCCCCTTCCCTCCTCCCCTCTCCTTTTTTTTCAAACAAG
AACGAGAAATGTAGATGATTCGTTTATCTTTCCTTGCTCCCTTCCTCTCT
CCCTTTCTCCCTCCCCCCCTCTCCCCCTTCTTACCTACAGGTCATCATCT
ACGACTCGGACTGGAACCCGCATCG GTACGTAAAACACCTCAGGAGGGAA
GAAGGAAGAAGAAGAAAAAGGACCAAAAAGACCGGGAGGGCATAACATGG
GTGGGCACTCTCGCGCCCTTTTCTCCTCCCCTCCTCCTTTTTCTTCCCCT
TCCCAATCCATCACTACTTACCCACCCACCTCGCCTCCCCTCCCCTTCCA
ACACCATCGCGACCTATCCACCTACCAACCGAACAGCGATGCCCAAGCCC
AAGACCGCGCCCACCGAATCGGCCAAACGCGTGACGTGGCGGTGTACCGT
TTATTGACCGTGGGGAGTGTGGAGATTGAGATGATGGAGGCGCAGATCAG
TAAGAAGAAGCTCGAGCGACTGTCCATCACGGGCGGAGATTTTAGGAAGG
CGGGGAGGAGGAGCAGGGGTGAGATGACGACGGAGAACCTCCGAAGATTG
CTCGCAGATGATGTGAAGGATATTCAGAGGAGGCATGGAGGGGAGGAGGG
GGCGGGGGAGGGGGGGGGGAGGGGGATATGA back to top Coding sequence (CDS) from alignment at chr4:243915..248485-
>NO04G00710.1 ID=NO04G00710.1|Name=NO04G00710.1|organism=Nannochloropsis oceanica|type=CDS|length=2523bp|location=Sequence derived from alignment at chr4:243915..248485- (Nannochloropsis oceanica) back to top